Heatmap: Cluster_396 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - -4.1 - - - 2.21 - -2.87 -4.05 2.18 0.82 -1.57 2.36 2.09 2.3 2.29 -6.3 -2.68 -3.62 -4.01 0.03 -0.07 - - - - - -
-3.04 -2.42 -2.13 -1.94 -2.39 -2.13 -0.68 -2.09 -2.37 0.51 1.35 1.19 -0.82 0.99 1.25 0.24 0.01 1.61 0.92 0.7 1.26 -0.18 -0.27 0.45 0.43 0.14 0.28 -1.65 -2.15 -2.29 -1.64 -1.88 -1.63
-4.84 - -3.64 - -2.83 - -0.1 -2.96 -1.77 -3.54 0.36 -0.65 1.66 1.48 -0.64 1.96 0.29 -0.57 1.54 1.89 1.5 -0.09 -0.53 0.77 -1.48 -0.61 0.0 -1.05 -2.18 -1.6 -1.57 -1.77 -0.88
- -9.6 -7.34 - - - -3.46 - - - 2.53 -5.81 -4.03 - 1.88 1.89 -0.7 2.14 1.75 2.3 2.13 -6.9 -5.12 -1.79 - -0.14 -0.43 - - - - - -
-3.16 -3.85 -2.47 -2.58 -2.38 -2.79 -0.04 -3.18 -3.49 -2.65 1.08 0.04 -1.48 1.06 0.69 1.38 -0.49 1.73 1.5 1.65 1.64 -0.45 -1.43 -0.09 -1.08 0.13 0.11 -0.61 -1.0 -1.09 -1.23 -1.08 -0.56
-5.1 -4.71 -5.04 -5.72 -4.86 -4.14 -2.13 -5.55 -5.07 -5.12 2.17 -0.83 -0.94 -0.31 1.42 1.83 -0.22 2.12 1.89 1.34 1.95 -1.34 -2.4 -2.21 -1.14 -1.2 -1.09 -0.66 -2.26 -2.17 -1.41 -0.53 -1.99
-1.9 -1.93 -1.9 -2.38 -1.75 -1.13 -1.01 -2.02 -2.59 -1.32 1.25 0.76 -0.47 0.66 1.01 1.56 0.26 1.25 1.05 1.15 1.09 0.47 -0.96 -0.96 0.33 0.38 0.56 -1.57 -1.78 -1.56 -1.78 -1.62 -0.77
-3.32 -3.76 -3.53 -2.9 -2.41 -2.25 -0.96 -2.65 -3.26 -3.95 0.14 -0.14 -1.44 -0.22 2.41 1.58 -0.2 1.27 1.49 1.89 1.4 -0.12 -0.53 -0.07 -0.21 -0.34 -0.06 -1.23 -2.28 -1.37 -1.06 -1.01 -2.24
- -11.03 - - - - -7.13 - - - 0.63 -0.63 0.78 -1.39 2.56 2.51 -0.84 0.92 1.54 0.95 1.42 -1.18 -1.54 -1.59 1.01 0.27 0.38 -1.69 -4.49 -3.55 -1.68 -1.28 -1.74
- -7.97 - - - - -6.45 - - - 0.95 -2.63 -4.93 -1.92 1.9 1.96 -1.18 2.0 2.53 2.06 2.52 -4.22 - -4.83 -3.54 -0.31 -0.87 -1.98 -1.32 -2.98 -1.88 -2.5 -3.25
- - - - - - - - - - 1.46 -2.18 1.21 -3.99 1.53 2.88 0.41 1.66 1.85 0.24 1.31 -6.63 -2.81 -6.32 1.36 -0.4 -0.08 -2.33 -4.24 -3.6 -1.14 -1.59 -3.05
- - -4.38 -6.18 -4.95 -1.62 -2.54 -4.78 -6.14 -2.51 1.5 -1.32 -1.99 -0.83 1.35 1.61 -0.82 2.17 1.28 1.57 1.6 -2.87 -4.86 -2.23 -4.11 -0.46 -0.41 0.68 0.42 0.2 0.03 0.05 -0.05
- - -6.36 -4.2 -2.76 -1.29 -1.64 -4.41 -3.73 -2.02 1.57 -0.32 -1.81 -1.09 1.52 1.88 -0.8 2.34 1.4 1.27 1.69 -1.57 -6.26 -2.14 -2.69 -0.88 -1.05 -0.04 0.01 -0.7 -0.04 -0.23 -0.9
-4.41 -3.98 -4.76 - -3.69 -4.19 -7.08 -2.36 -3.92 -4.87 1.81 -0.22 -1.61 0.52 2.83 1.59 -0.94 1.72 1.77 1.39 1.58 -1.19 -1.19 -2.69 -1.66 -0.51 -0.08 -3.29 -5.56 - -4.11 -2.46 -
-2.48 -2.8 -4.05 -1.61 -2.32 -3.32 -4.67 -3.09 -2.62 -2.74 1.48 0.12 -1.13 -1.03 2.62 1.72 -0.83 2.09 1.57 1.23 1.36 -0.4 -0.2 -3.7 -0.79 -0.17 0.12 -3.1 -7.73 -6.59 -5.02 -3.35 -5.93
-5.0 -6.57 -4.09 -2.83 -2.47 -1.43 -3.31 -1.67 -2.3 0.18 1.56 -1.34 -1.23 -2.34 0.76 1.3 -0.57 1.94 1.9 1.88 1.96 -2.6 -2.28 -3.51 -0.88 -1.4 -1.14 0.05 -1.77 -1.66 0.56 0.24 -1.31
- - - -8.79 -8.25 -7.14 - - - -7.44 1.4 -2.76 -1.75 -2.14 0.72 2.32 -0.26 1.88 2.24 2.24 2.26 -3.38 -4.32 -5.67 -0.92 -3.23 -2.13 -0.98 -1.48 -1.29 -0.23 -0.2 -1.99
-3.3 -4.87 -4.87 -3.51 -5.67 - -0.07 - - - 1.12 -1.16 -0.41 -0.04 1.78 1.72 -0.51 1.53 1.83 1.8 1.61 -0.67 -1.28 1.27 -0.29 -0.39 -0.28 -1.71 -2.64 -2.56 -2.74 -2.06 -2.81
-3.45 -3.54 -5.61 -5.96 -6.01 - -0.06 -7.02 -5.59 - 1.03 -1.09 -0.46 -0.81 2.03 1.26 -0.43 1.49 1.62 1.92 1.75 -0.94 -0.74 0.96 -0.53 -0.03 0.05 -1.35 -1.52 -2.37 -1.51 -1.57 -1.67
-6.17 -5.35 -5.57 -4.1 -3.94 -2.61 -3.94 -2.41 -2.27 -1.12 1.47 -0.49 -1.57 0.03 1.86 1.73 -0.62 1.63 1.47 1.31 1.45 -2.66 -1.93 -2.26 -1.18 -0.57 -0.47 0.43 -0.62 -0.41 0.37 0.41 -1.45
- - - - - - - -9.2 - -6.13 1.24 -8.36 - -6.03 2.29 1.63 -1.25 1.8 2.59 2.58 2.73 -9.45 - - - -4.82 -5.39 - - - - - -
-7.29 -6.69 - - - - -6.97 -9.84 -8.86 -4.25 1.33 -1.32 -0.71 -2.47 2.53 1.92 -0.64 1.83 1.66 1.34 1.68 -1.89 -2.24 -1.34 0.1 0.15 0.35 -0.96 -3.96 -3.21 -0.91 -0.74 -1.26
-3.69 -3.9 -3.64 -0.83 -0.8 -1.08 0.93 -3.74 -3.8 -7.13 0.15 0.61 -0.52 0.21 0.24 0.86 -0.25 1.75 1.56 1.19 1.24 -0.78 -0.07 -3.14 -0.28 1.11 0.56 -0.5 -1.72 -1.8 -0.27 -0.26 -0.42
-5.83 -6.74 -5.35 -5.11 -5.67 -5.25 -3.19 -3.61 -5.07 -0.29 1.49 -0.55 -1.57 0.43 2.35 1.72 0.02 1.45 1.8 1.55 1.75 -1.14 -1.61 -1.33 -1.47 0.0 0.25 -4.74 -2.59 -1.16 -3.66 -4.11 -2.31
- - - - - - -9.32 - - -9.99 1.74 -2.94 -3.31 -2.84 0.6 -0.85 -0.57 2.73 2.31 1.42 2.52 -5.29 -5.05 -10.14 -3.92 -0.35 -0.21 -0.88 -0.38 0.07 0.01 -0.26 -0.87
-5.96 -5.37 -7.99 -8.05 -6.75 -6.44 -2.44 -7.86 -6.79 -3.72 1.08 -0.58 -4.4 0.76 1.16 1.06 -2.03 2.12 2.23 2.15 2.18 -0.4 -3.97 -0.16 -4.89 0.07 -0.21 -1.51 -2.42 -2.38 -1.74 -1.37 -1.05
-3.07 -3.3 -4.0 -3.37 -3.69 -7.89 -2.46 -3.59 -3.54 -6.25 1.61 -0.07 -2.3 0.09 1.27 1.43 -2.72 2.17 2.03 1.28 2.07 -0.29 -4.35 0.39 -1.44 0.02 -0.3 -0.54 -2.95 -2.84 -1.54 -0.86 -2.38
-1.56 -3.2 -1.32 -2.08 -1.14 -3.59 -1.7 -1.75 -1.02 -1.62 2.06 -0.97 -2.39 -0.78 0.04 1.16 0.24 1.48 1.92 1.9 1.69 -0.98 -2.45 -0.71 -0.69 0.45 0.46 -1.52 -1.72 -1.75 -2.98 -1.96 -0.86
-3.3 -3.44 -3.19 -2.68 -2.78 -2.44 -0.05 -3.46 -3.88 -2.33 1.14 0.17 -0.38 0.63 1.41 0.94 0.26 1.44 0.84 1.03 1.13 -0.35 -0.03 0.64 -0.93 0.22 -0.04 -0.2 -0.62 -0.9 -0.32 -0.18 -0.01
-2.83 -3.36 -2.24 -1.53 -1.48 -1.14 -1.88 -1.7 -1.54 -1.34 1.88 -1.11 -1.21 -1.03 1.63 1.73 -0.38 1.79 1.74 1.42 1.6 -1.48 -3.28 -2.94 -0.45 -0.28 -0.1 -1.07 -1.88 -2.09 -1.43 -0.72 -1.79
-10.09 -7.87 -5.98 -5.04 -4.5 -3.26 -6.42 -2.61 -3.25 -0.23 1.3 -1.69 -0.06 -0.28 1.68 0.93 -0.5 2.2 1.45 1.61 1.62 -1.42 -1.85 -3.33 0.2 -0.91 -0.62 -0.91 -0.58 0.16 -0.45 -0.75 0.14
-4.83 -2.76 -3.25 - -6.41 - 1.37 - - - 1.58 1.4 -0.93 -0.05 0.27 1.62 0.36 1.55 2.16 0.99 1.56 0.23 -4.36 -2.56 -0.37 0.72 0.38 - - - - - -
-7.88 -8.21 -9.03 -8.69 -8.15 -8.2 -0.92 -7.62 -9.93 - 1.22 1.04 -0.04 0.7 1.11 1.7 0.4 1.16 1.31 1.56 1.43 0.92 -0.38 -0.65 0.5 -0.59 -0.51 -1.51 -1.75 -1.53 -1.76 -1.44 -0.69
-7.73 -6.18 - -9.37 -10.92 - -5.98 -4.87 -5.65 -3.52 0.94 -4.55 -2.37 -0.83 2.7 1.87 -1.8 2.14 2.13 1.96 2.39 -5.3 -9.71 -1.92 -4.16 -0.61 -0.83 -4.71 -6.01 -8.01 -9.02 -5.24 -3.83
- - - - - - - - - - 0.93 - - - 2.32 1.65 -2.0 2.33 2.52 2.26 2.81 - - -5.28 - -3.79 -4.26 - - - - - -
- - - - - - -1.49 - - - 1.23 -1.1 0.94 0.4 0.93 1.42 0.49 1.64 1.59 1.99 1.8 0.25 - 0.25 -0.92 0.21 0.33 -1.53 -1.11 -2.36 -2.31 -3.61 -1.3
- - - - - - -4.65 - - -8.28 1.35 -2.42 -0.59 -4.03 1.77 2.51 -0.06 2.23 1.95 2.3 2.03 -4.43 -5.64 -6.51 0.33 -2.19 -1.69 - - - - - -
-1.59 -2.05 -1.82 -1.75 -1.32 -0.65 -0.39 -1.48 -2.23 -0.68 0.91 -0.08 -0.57 -0.15 0.84 0.25 -0.22 1.82 1.03 1.7 1.47 -0.15 -0.95 -0.51 0.57 -0.41 0.06 -0.59 -0.76 -1.01 -0.48 -0.57 -1.04
- - - - - -3.88 - - - - 2.3 -1.75 0.22 -0.75 1.21 1.62 -0.27 1.57 2.15 1.25 1.74 -2.76 -0.55 -2.42 1.54 -2.55 -1.15 -2.22 -1.65 -2.16 -2.47 -1.44 -0.43
-7.34 -6.76 - - -7.97 -4.55 -2.15 - -9.62 -4.55 1.77 1.69 -2.12 -0.35 2.03 1.12 -0.06 1.39 1.67 1.76 1.91 0.12 -2.19 -2.13 -0.95 0.32 0.32 -5.29 -4.97 -3.53 -3.93 -3.94 -4.12
- - - - -4.34 - - - - - 2.66 0.38 -0.79 - -0.29 2.21 0.09 1.37 1.95 1.34 2.19 -0.6 -3.73 0.04 -0.11 -0.28 0.28 - - - - - -
-3.92 -6.23 - - -4.04 - - -3.29 - - 2.16 - 1.07 - 0.7 2.26 0.2 1.42 2.01 1.11 0.86 0.29 -1.39 1.63 0.19 0.18 -0.04 - - - - - -
- - -6.46 - -8.41 - -4.93 -5.79 -5.07 -3.39 1.95 -2.08 -0.87 -4.88 1.85 2.05 0.27 2.0 1.93 1.21 1.83 -3.55 -0.76 -2.54 -0.81 -1.65 -0.91 0.22 -6.94 -4.92 -0.86 0.51 -5.32
- - - - -7.15 -5.14 - -5.71 - - 1.6 - -3.43 - 1.38 2.16 -0.74 1.97 1.88 2.45 2.32 - -3.47 -5.19 -2.09 -1.19 -1.67 -0.78 -1.77 -2.55 -1.51 0.59 -3.32
-1.91 -1.64 -1.81 -1.73 -1.23 -1.68 -1.03 -1.38 -2.14 -2.02 0.96 -0.36 -0.18 -0.29 1.88 1.13 -0.04 1.28 1.35 1.2 1.37 -0.23 -0.62 0.51 0.34 0.0 -0.12 -1.0 -1.23 -1.98 -1.04 -1.12 -1.47
- -8.97 - -6.97 -5.7 -6.12 -4.21 -4.94 -6.05 -4.8 1.11 -1.14 -2.82 -0.26 1.89 1.62 -0.87 2.37 2.28 1.77 2.49 -2.65 -3.35 -3.8 -2.64 -0.65 -0.96 -2.49 -1.17 -3.03 -2.68 -2.76 -2.82
- - - - -9.12 - -5.38 - - - 1.52 -1.33 -0.21 -3.21 1.67 2.57 -0.24 2.06 1.65 2.24 1.82 -1.1 -3.57 -5.58 0.94 -1.83 -1.46 -5.39 -6.16 -6.29 -5.44 -8.07 -5.56
-2.64 -3.23 -2.89 -4.62 -3.59 -2.81 -0.25 -4.42 -4.12 -3.98 1.49 0.21 -0.16 -0.15 1.39 2.0 -0.45 1.7 1.45 1.32 1.38 -0.53 -1.12 -0.52 0.62 -0.56 -0.56 -1.28 -1.4 -1.45 -1.48 -1.75 -0.81
-7.82 -7.64 - - -6.77 - -6.13 - -8.49 - 1.15 -2.22 -0.51 -1.89 2.38 2.23 -0.94 2.53 1.47 1.79 1.58 -0.96 -4.15 -0.77 -0.12 -1.25 -1.3 -1.31 -3.04 -3.11 -2.45 -1.62 -3.0
-5.56 -4.82 -6.3 -5.07 -4.48 -3.12 -3.44 -5.44 -5.11 -4.45 0.88 -0.5 -0.37 -0.12 1.89 0.82 -0.68 2.36 1.09 1.07 1.93 0.37 -2.59 -0.3 -0.0 -0.28 -0.21 -0.08 -0.8 -0.81 -0.13 -0.46 -1.48
- - - - - - - - - - 1.57 - -3.96 - 1.98 -0.16 0.16 2.85 1.57 2.11 2.33 - -3.0 -1.26 -2.84 1.22 0.49 - -5.3 - -5.56 - -5.45
-5.78 -6.25 -6.23 -2.59 -6.04 -4.84 -3.33 -4.39 -5.11 - 0.92 -0.51 -2.46 -1.08 2.4 1.48 -0.89 1.64 1.44 1.86 1.95 -0.68 0.07 -2.22 -0.44 -0.65 -0.4 -1.35 -1.24 -0.57 -0.88 -1.71 0.06
-3.66 -3.9 -4.43 -2.06 -5.09 -3.25 -4.61 -7.3 -4.99 -2.9 0.97 0.03 -1.58 0.33 2.15 1.0 -0.69 1.37 1.61 1.61 1.86 -1.78 -0.17 -2.55 -0.16 -0.62 -0.53 -0.73 -1.31 -0.19 -0.4 -0.71 0.49
- -8.9 - -4.65 -3.09 -3.27 -3.96 -1.8 -2.24 -1.76 0.75 0.2 0.06 -0.71 2.24 2.41 -0.15 1.33 1.48 0.81 1.39 0.54 -2.13 -3.54 1.14 -0.47 -0.26 -2.44 -2.27 -2.42 -2.22 -1.85 -2.68
-4.92 -4.01 -4.33 -2.72 -3.28 -2.47 -1.29 -2.92 -2.79 -1.82 1.5 -0.6 -1.15 -1.7 0.97 1.27 -0.6 2.18 1.69 1.59 2.02 -2.48 -3.15 -1.59 -0.57 -0.98 -0.54 -0.05 -0.03 -0.59 0.21 -0.74 -1.02
-5.0 -4.03 -4.93 -5.43 -5.92 -6.65 -1.03 -9.94 -8.3 -7.56 1.56 -1.63 -2.26 -4.7 2.82 0.02 -0.9 1.19 1.96 1.38 2.33 -2.41 -4.1 0.23 -1.93 -1.29 -1.39 -0.88 -0.74 -0.52 -0.83 -0.49 -0.31
- - -4.0 - - -5.14 0.06 - - -5.36 0.64 -0.55 0.63 0.35 1.26 1.77 0.44 1.61 1.39 1.21 1.47 -0.27 0.53 0.72 0.15 0.08 0.12 -1.55 -2.05 -2.8 -1.63 -1.85 -1.45
- - - - - - -3.59 - - - 0.06 -1.1 -2.47 -1.38 3.02 1.77 -0.7 1.63 2.1 1.84 1.91 0.08 -3.68 - -0.82 -0.58 -0.81 -4.87 -4.68 -1.67 - - -0.61
-5.52 - - - - - - - - - 1.49 -6.4 -3.02 -4.07 1.77 1.83 -1.16 2.47 2.59 1.42 2.33 -3.82 -6.52 - -3.77 0.41 0.22 -2.84 -1.99 -4.79 -2.55 -4.3 -5.06

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.