Heatmap: Cluster_436 (HCCA cluster)

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(Showing raw values)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
0.41 0.25 0.16 0.19 0.1 0.02 14.38 0.01 0.01 0.23 22.25 20.51 16.02 34.46 8.29 26.47 10.93 20.48 20.2 17.46 17.43 21.0 21.84 16.13 27.09 5.79 6.52 6.88 10.68 11.45 4.08 3.99 28.84
0.01 0.13 0.01 0.12 0.04 0.0 28.02 0.03 0.01 0.0 35.91 35.55 37.35 36.31 43.23 71.61 49.72 48.62 71.72 71.49 72.26 38.71 36.78 28.31 25.32 24.7 24.26 22.8 22.56 27.53 23.17 24.77 24.55
16.84 13.94 15.95 15.81 21.35 24.71 36.23 9.98 12.11 13.56 40.5 42.02 30.79 26.47 30.8 42.28 33.21 37.63 45.29 38.08 36.35 34.26 28.49 34.16 40.16 23.21 24.85 31.35 35.68 49.77 32.62 38.2 48.43
0.03 0.06 0.1 0.04 0.13 0.13 4.56 0.0 0.05 0.0 6.27 5.92 6.54 6.41 3.05 3.27 4.28 5.25 4.44 5.14 5.42 7.57 8.13 6.36 5.71 1.73 1.85 1.96 2.61 2.41 1.97 1.92 4.5
2.99 2.31 1.3 0.89 1.41 1.14 11.0 1.24 1.13 1.13 27.74 16.33 31.38 16.7 20.83 38.11 18.31 35.51 33.67 33.48 28.61 19.24 29.11 18.0 17.0 5.12 6.15 12.73 16.23 19.7 11.76 11.22 18.57
0.15 0.06 0.03 0.19 0.0 0.09 2.89 0.0 0.0 0.0 5.11 3.22 4.02 5.52 1.83 4.38 5.66 6.04 4.02 6.2 6.11 9.57 3.88 6.72 1.87 0.3 0.43 0.59 1.26 1.2 0.5 0.67 2.09
3.03 2.24 1.86 2.0 2.45 4.33 4.46 2.11 1.39 2.7 4.36 4.32 2.62 5.06 4.35 6.5 1.91 4.19 5.38 4.13 5.95 5.99 9.72 0.79 8.54 2.43 2.5 3.03 3.28 4.41 2.59 3.52 5.43
0.71 0.39 0.43 0.5 0.18 0.38 4.05 0.27 0.06 0.02 33.85 16.14 13.75 19.03 26.34 42.33 17.57 45.21 61.08 55.04 53.59 14.26 19.86 28.95 16.37 5.11 5.68 3.14 3.19 7.01 2.9 4.56 10.69
31.98 30.61 24.54 19.27 17.0 16.87 46.37 14.49 14.12 18.39 58.17 51.76 77.6 36.02 36.69 52.19 66.37 56.8 72.1 62.44 58.69 53.67 53.46 44.92 53.06 25.68 23.17 39.21 55.29 64.6 47.22 44.33 57.19
16.08 10.34 12.51 8.19 7.0 5.4 23.97 5.78 3.68 6.61 185.35 73.29 93.54 122.07 130.38 233.57 82.9 266.86 240.64 210.87 221.77 68.66 73.39 230.39 72.67 27.59 30.23 13.8 15.48 33.18 14.29 20.01 45.63
0.02 0.0 0.01 0.0 0.01 0.0 0.85 0.04 0.0 0.0 6.23 3.18 2.0 3.0 4.25 4.65 1.21 8.36 11.35 8.76 9.85 3.07 0.88 4.69 1.23 0.23 0.29 0.39 0.18 0.46 0.37 0.48 1.59
0.21 0.11 0.17 0.07 0.1 0.26 20.93 0.16 0.0 0.2 23.05 28.31 24.18 21.62 6.06 27.96 17.59 16.54 25.33 32.17 32.56 32.36 36.1 15.26 33.03 6.87 7.73 9.22 13.67 16.75 5.75 6.14 38.91
0.83 0.5 0.3 0.24 0.25 0.33 21.53 0.26 0.05 0.61 25.23 29.75 21.59 35.75 9.85 28.09 14.34 19.6 25.21 29.39 26.38 29.39 34.22 19.47 34.75 8.48 9.6 10.98 15.93 17.6 6.78 6.2 44.33
1.24 1.73 1.42 1.94 1.74 1.41 4.53 2.21 2.14 2.45 7.51 8.09 10.3 8.49 4.71 10.45 7.38 7.93 8.11 6.49 8.63 7.53 6.3 4.03 11.86 3.11 3.3 6.26 8.87 8.53 4.95 6.49 9.57
0.28 0.34 0.46 0.29 0.31 0.13 6.96 0.38 0.27 0.66 18.31 11.84 9.88 7.39 18.05 16.47 11.54 14.02 22.58 17.37 17.4 8.76 7.93 6.66 9.06 7.78 8.03 6.14 8.14 7.75 7.87 8.02 6.29
0.05 0.02 0.03 0.01 0.02 0.02 0.76 0.0 0.0 0.0 0.73 0.57 1.63 0.86 1.27 1.22 0.93 0.73 1.08 1.24 0.73 0.39 1.28 1.19 0.98 0.19 0.14 0.53 0.59 0.59 0.59 0.56 0.53
11.56 10.16 6.25 9.16 15.14 15.68 13.37 12.26 13.68 11.07 178.96 75.46 58.67 105.87 62.4 157.94 74.82 210.21 177.8 197.06 190.45 57.38 21.62 49.53 88.74 15.13 19.79 4.83 4.93 4.67 2.84 7.77 6.63
0.18 0.19 0.07 0.19 0.06 0.11 0.69 0.04 0.07 0.04 0.84 0.79 1.05 0.84 1.01 1.85 0.76 0.96 0.99 1.62 1.33 0.93 0.99 1.05 1.11 0.27 0.25 0.61 0.84 0.81 1.1 0.66 0.88
118.89 112.77 104.7 95.1 117.35 166.6 207.03 73.74 81.05 113.11 331.04 291.17 243.82 192.98 330.54 229.69 228.45 295.15 279.43 254.1 266.38 230.38 194.73 205.17 268.48 159.58 171.31 216.16 291.4 322.14 218.63 238.3 277.25
1.67 1.35 2.14 1.91 2.35 1.05 14.11 2.48 2.51 5.88 75.59 87.97 55.34 99.85 33.76 106.77 56.08 70.36 99.47 101.26 90.12 56.04 31.87 19.55 89.45 10.43 15.39 21.03 45.65 48.08 26.76 23.28 44.01
0.09 0.07 0.05 0.23 0.02 0.06 4.42 0.28 0.17 0.11 9.11 4.39 7.88 5.11 5.07 15.7 7.41 7.58 13.09 17.57 12.26 5.96 3.61 8.7 5.83 2.7 3.46 3.25 4.3 3.39 2.96 3.27 4.27
0.0 0.02 0.01 0.02 0.03 0.0 2.97 0.0 0.22 0.0 2.74 3.89 6.4 1.42 4.11 10.15 3.54 2.8 3.74 5.98 3.83 7.28 5.36 4.33 6.08 0.09 0.12 3.36 4.05 5.03 4.23 3.5 6.42
0.14 0.21 0.1 0.03 0.2 0.53 5.55 0.1 0.14 0.08 6.45 5.32 4.59 10.8 3.82 6.29 2.71 8.21 5.0 3.33 4.2 6.24 6.72 3.7 3.52 0.79 1.09 2.26 1.88 2.19 2.09 2.53 2.51
0.02 0.02 0.08 0.04 0.12 0.02 1.21 0.19 0.24 0.07 0.79 1.19 0.5 1.75 0.55 0.77 1.07 0.48 0.8 0.72 0.62 1.91 0.88 2.15 0.69 0.0 0.0 0.31 0.28 0.37 0.24 0.17 0.27
1.08 1.77 1.56 1.55 0.75 0.85 23.79 0.97 0.15 1.15 33.93 35.24 32.94 25.82 37.56 51.67 44.28 41.93 55.51 56.46 56.48 33.73 30.04 26.98 25.91 26.88 28.04 23.25 22.95 27.19 23.67 24.19 26.59
0.27 0.15 0.0 0.19 0.29 0.0 2.54 0.07 0.35 0.37 1.9 2.46 2.22 1.73 2.47 2.57 2.14 3.46 1.79 2.04 2.98 3.73 1.5 2.7 2.44 0.0 0.0 0.7 0.7 0.77 0.78 0.55 0.31
0.0 0.01 0.04 0.0 0.0 0.0 0.82 0.0 0.0 0.0 1.15 1.89 1.94 0.12 1.49 3.84 0.64 1.72 1.39 1.39 2.09 1.43 0.48 1.53 1.26 0.11 0.13 0.37 0.3 0.75 0.23 0.27 0.38
0.54 1.33 0.24 0.45 0.12 0.51 16.03 0.0 0.05 0.44 13.31 22.2 13.07 13.05 8.65 25.79 10.61 19.32 22.98 23.66 21.15 6.26 13.77 1.95 12.03 11.05 10.48 5.51 18.43 18.34 7.48 4.8 26.97
11.52 9.62 5.62 6.42 4.51 5.12 15.52 1.86 4.55 3.23 46.2 19.1 43.83 25.8 24.68 44.97 48.54 57.94 64.21 52.93 62.96 29.59 28.96 79.78 37.33 9.87 14.13 19.23 16.94 22.74 14.66 14.69 30.03
1.38 1.21 0.93 1.38 1.27 1.1 8.97 0.45 0.41 0.42 19.37 12.1 17.04 9.12 8.12 18.79 17.24 17.28 22.32 24.13 27.41 11.24 15.12 10.71 12.72 11.09 12.45 9.43 12.29 12.31 9.61 7.45 12.87
0.06 0.0 0.0 0.0 0.0 0.0 0.55 0.0 0.05 0.0 0.55 1.65 0.98 0.62 2.31 1.33 0.77 0.66 0.87 0.83 1.47 1.26 0.22 0.74 0.91 0.12 0.02 0.72 0.37 0.7 0.95 0.42 0.51
5.27 3.72 6.92 5.19 6.42 8.35 8.92 4.78 6.15 6.1 45.8 19.38 28.82 12.77 68.03 59.27 24.68 50.79 60.85 55.07 64.2 19.53 29.02 17.7 30.24 5.3 7.72 13.78 14.72 16.52 16.36 18.55 15.63
0.22 0.12 0.1 0.01 0.12 0.0 9.88 0.05 0.07 0.0 19.8 14.2 23.41 19.27 25.95 46.68 20.17 29.42 37.85 30.82 31.71 17.97 18.78 16.75 13.12 12.11 12.39 11.07 14.29 11.14 12.15 13.78 13.9
0.44 0.11 0.6 0.37 1.08 0.41 13.62 0.72 0.6 0.38 17.08 17.28 18.43 14.18 18.77 24.59 8.19 9.6 12.71 13.17 11.5 21.03 18.78 7.41 18.8 4.02 4.92 1.97 3.51 3.83 2.55 2.25 4.4
44.47 41.42 44.08 40.76 28.12 41.79 35.04 58.62 34.58 60.4 229.85 100.77 86.13 176.25 41.86 224.07 94.29 219.18 259.84 217.93 228.47 82.29 16.92 15.36 102.2 50.29 48.4 9.07 8.53 8.28 11.06 10.68 8.42
0.59 0.24 0.8 1.09 0.22 0.06 54.97 0.16 1.34 0.14 59.43 71.52 90.27 79.07 78.93 109.16 52.4 43.44 56.6 51.7 51.22 76.35 81.56 93.55 62.56 2.67 2.91 14.11 12.03 12.02 14.36 18.33 12.48
0.06 0.06 0.02 0.21 0.21 0.06 20.7 0.31 0.74 0.0 37.7 37.48 51.0 36.57 21.99 76.49 24.87 39.83 42.17 33.52 43.49 32.52 26.45 41.59 29.11 8.51 8.31 12.81 13.72 14.37 12.57 12.82 13.05
0.3 0.12 0.05 0.06 0.19 0.04 6.35 0.24 0.06 0.05 84.29 49.27 33.95 54.66 35.13 103.09 56.62 73.19 116.46 142.17 128.39 40.46 19.35 24.98 51.36 9.55 11.34 3.07 3.47 3.12 2.43 6.38 4.57
3.89 1.78 3.49 3.61 6.61 9.34 26.77 2.64 6.75 2.27 13.12 16.42 13.79 13.01 5.02 19.47 14.49 13.49 22.37 25.81 18.74 17.22 17.04 6.52 13.56 12.48 17.03 11.1 19.33 21.02 11.56 9.07 30.96
0.19 0.15 0.09 0.2 0.11 0.06 4.31 0.07 0.04 0.18 3.59 4.82 3.22 6.05 3.68 6.36 2.07 3.56 3.38 4.04 3.9 4.66 2.62 1.95 3.17 1.35 2.03 0.81 1.19 2.02 1.27 1.19 1.45
0.05 0.26 0.08 0.14 0.04 0.0 7.53 0.0 0.0 0.0 19.66 8.67 20.11 19.77 16.15 32.94 26.23 29.02 36.34 38.8 39.12 21.19 25.19 44.67 19.71 4.1 4.5 8.53 7.91 11.69 7.28 8.32 14.12
28.08 19.89 21.11 16.63 24.39 27.6 26.78 30.44 27.4 27.33 62.45 38.53 63.01 41.56 41.14 62.07 37.65 46.12 67.17 60.19 64.75 36.98 40.75 39.92 32.88 26.03 28.25 29.89 45.13 47.81 32.15 29.46 50.93
1.38 1.75 0.72 1.65 1.35 3.02 4.68 5.26 3.01 8.38 78.74 35.12 61.36 75.32 39.53 67.73 41.57 84.86 92.87 57.36 87.39 49.78 40.46 112.0 74.25 13.72 15.34 13.32 26.31 35.52 22.54 16.02 39.9
0.19 0.19 0.07 0.24 0.06 0.15 4.32 0.29 0.13 0.0 4.58 6.16 5.05 3.96 5.09 8.1 4.72 7.17 7.17 6.54 8.33 4.85 8.15 4.77 4.41 0.75 0.8 3.52 3.62 3.3 3.0 2.64 4.9
0.16 0.02 0.06 0.1 0.08 0.0 2.65 0.0 0.0 0.02 1.43 3.08 4.61 2.18 2.07 2.98 1.88 2.88 1.06 2.38 1.68 2.95 2.34 3.06 2.19 0.65 0.57 1.65 1.77 1.93 1.47 1.52 1.65
30.39 22.76 18.85 17.63 16.9 20.71 47.36 13.74 11.74 14.24 58.37 54.31 32.0 74.15 19.75 50.92 29.23 68.77 52.58 40.82 47.94 51.59 50.33 30.78 75.87 14.53 16.4 19.95 30.81 35.89 11.17 12.36 80.28
87.13 94.56 88.79 75.2 75.86 86.88 337.65 165.48 159.67 184.65 554.86 941.39 503.32 621.84 229.45 407.87 474.74 590.75 488.14 351.4 541.53 790.26 638.12 248.86 807.94 275.0 294.01 228.91 201.09 367.34 377.72 260.51 366.21
2.91 3.27 1.94 1.96 2.94 3.96 5.45 2.49 2.65 2.83 5.79 5.18 2.82 7.73 4.61 6.02 2.37 5.28 6.27 4.4 4.98 4.22 7.32 3.42 4.65 3.71 3.39 5.9 5.51 4.08 4.85 4.25 4.55
104.64 117.24 101.43 98.91 173.14 54.95 737.8 372.43 523.85 195.76 986.6 1536.65 1348.54 1103.93 372.37 876.47 899.49 1001.54 812.3 572.19 796.34 1606.2 1186.38 729.86 1489.49 265.77 287.75 321.97 282.18 514.49 545.92 387.27 489.79
0.0 0.02 0.0 0.0 0.0 0.0 0.07 0.0 0.05 0.0 0.79 0.14 0.47 0.0 0.26 0.74 0.28 0.43 0.68 0.65 0.51 0.21 0.33 0.93 0.49 0.01 0.04 0.0 0.0 0.0 0.0 0.0 0.0
0.26 0.18 0.06 0.12 0.1 0.08 7.09 0.05 0.03 0.0 12.66 6.54 8.82 7.56 6.78 18.23 13.89 16.21 17.1 17.79 18.71 6.68 4.96 8.88 7.11 5.52 7.82 5.48 7.39 7.2 6.31 5.45 8.24
0.24 0.32 0.46 0.81 2.22 1.62 3.72 0.41 0.32 0.69 39.64 21.13 10.89 22.99 10.6 50.79 15.54 51.55 58.66 62.01 51.96 22.48 4.14 18.7 21.98 9.76 11.46 5.4 3.99 3.03 1.5 3.81 4.89
1.94 1.3 0.32 1.54 1.16 0.72 29.63 0.28 0.69 0.52 76.23 55.38 69.42 58.1 53.49 116.99 70.39 83.52 106.85 110.85 105.29 42.96 62.96 54.02 43.53 44.84 43.74 35.82 29.53 39.03 31.99 39.46 41.11
1.38 1.35 2.19 1.7 2.7 2.37 6.55 0.8 1.28 1.89 9.68 12.92 15.97 8.42 8.55 6.7 8.89 8.74 4.23 3.28 4.13 12.08 5.05 10.41 13.31 3.03 4.08 5.31 4.12 4.66 5.47 3.9 6.26
12.83 15.25 10.39 9.27 12.47 14.76 46.01 13.53 15.91 12.95 32.39 43.47 59.19 45.83 31.43 39.96 33.95 29.68 30.52 26.4 30.08 47.64 50.86 65.57 30.44 26.37 26.86 22.24 27.25 24.98 20.4 19.11 29.22

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)