Heatmap: Cluster_436 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-4.86 -5.55 -6.2 -5.97 -6.86 -9.12 0.27 -9.73 -9.97 -5.72 0.9 0.78 0.42 1.53 -0.53 1.15 -0.13 0.78 0.76 0.55 0.54 0.81 0.87 0.43 1.18 -1.05 -0.87 -0.8 -0.16 -0.06 -1.55 -1.58 1.27
-11.27 -7.74 -11.01 -7.92 -9.43 - -0.0 -9.96 -11.6 - 0.36 0.34 0.41 0.37 0.62 1.35 0.83 0.79 1.35 1.35 1.37 0.46 0.39 0.01 -0.15 -0.18 -0.21 -0.3 -0.31 -0.03 -0.28 -0.18 -0.19
-0.86 -1.13 -0.93 -0.95 -0.51 -0.3 0.25 -1.61 -1.33 -1.17 0.41 0.46 0.02 -0.2 0.02 0.47 0.12 0.31 0.57 0.32 0.25 0.17 -0.1 0.17 0.4 -0.39 -0.29 0.04 0.23 0.71 0.1 0.33 0.67
-6.58 -5.72 -5.05 -6.29 -4.69 -4.67 0.48 - -5.92 - 0.94 0.86 1.0 0.97 -0.1 0.0 0.39 0.69 0.44 0.66 0.73 1.21 1.32 0.96 0.81 -0.92 -0.82 -0.74 -0.33 -0.44 -0.73 -0.76 0.46
-2.37 -2.74 -3.57 -4.12 -3.46 -3.76 -0.49 -3.65 -3.78 -3.78 0.84 0.08 1.02 0.11 0.43 1.3 0.24 1.2 1.12 1.11 0.89 0.32 0.91 0.22 0.14 -1.59 -1.33 -0.28 0.07 0.35 -0.39 -0.46 0.27
-4.1 -5.54 -6.27 -3.74 - -4.87 0.17 - - - 0.99 0.33 0.65 1.11 -0.49 0.77 1.14 1.24 0.65 1.27 1.25 1.9 0.6 1.39 -0.45 -3.09 -2.57 -2.12 -1.02 -1.09 -2.36 -1.93 -0.29
-0.35 -0.79 -1.05 -0.95 -0.66 0.16 0.21 -0.87 -1.47 -0.52 0.17 0.16 -0.56 0.39 0.17 0.75 -1.02 0.12 0.48 0.1 0.62 0.63 1.33 -2.3 1.14 -0.67 -0.63 -0.35 -0.24 0.19 -0.58 -0.14 0.49
-4.45 -5.33 -5.18 -4.95 -6.42 -5.36 -1.94 -5.86 -8.0 -9.77 1.12 0.05 -0.18 0.29 0.76 1.45 0.18 1.54 1.98 1.83 1.79 -0.12 0.35 0.9 0.08 -1.6 -1.45 -2.31 -2.28 -1.15 -2.42 -1.77 -0.54
-0.43 -0.5 -0.81 -1.16 -1.34 -1.36 0.1 -1.57 -1.61 -1.23 0.43 0.26 0.85 -0.26 -0.23 0.27 0.62 0.4 0.74 0.53 0.44 0.31 0.31 0.06 0.3 -0.75 -0.9 -0.14 0.36 0.58 0.13 0.04 0.41
-2.3 -2.93 -2.66 -3.27 -3.5 -3.87 -1.72 -3.77 -4.43 -3.58 1.23 -0.11 0.24 0.63 0.72 1.56 0.07 1.76 1.61 1.42 1.49 -0.2 -0.11 1.54 -0.12 -1.52 -1.39 -2.52 -2.35 -1.25 -2.47 -1.98 -0.79
-6.98 - -7.43 - -8.86 - -1.46 -5.88 - - 1.4 0.43 -0.24 0.35 0.85 0.98 -0.96 1.83 2.27 1.9 2.07 0.38 -1.42 1.0 -0.94 -3.34 -3.0 -2.58 -3.72 -2.35 -2.65 -2.3 -0.56
-6.18 -7.09 -6.46 -7.7 -7.19 -5.86 0.47 -6.56 - -6.21 0.61 0.9 0.68 0.51 -1.32 0.89 0.22 0.13 0.74 1.09 1.11 1.1 1.25 0.01 1.13 -1.14 -0.97 -0.71 -0.15 0.15 -1.4 -1.3 1.36
-4.27 -5.0 -5.73 -6.05 -6.01 -5.61 0.43 -5.93 -8.39 -4.72 0.66 0.9 0.43 1.16 -0.7 0.81 -0.16 0.29 0.66 0.88 0.72 0.88 1.1 0.28 1.12 -0.92 -0.74 -0.54 -0.01 0.14 -1.24 -1.37 1.47
-2.21 -1.73 -2.02 -1.56 -1.72 -2.03 -0.34 -1.38 -1.43 -1.23 0.39 0.49 0.84 0.56 -0.29 0.86 0.36 0.46 0.5 0.18 0.59 0.39 0.13 -0.51 1.04 -0.89 -0.8 0.12 0.63 0.57 -0.22 0.17 0.74
-4.86 -4.57 -4.14 -4.81 -4.72 -6.0 -0.22 -4.42 -4.9 -3.61 1.18 0.55 0.29 -0.13 1.16 1.02 0.51 0.79 1.48 1.1 1.1 0.11 -0.03 -0.28 0.16 -0.06 -0.01 -0.4 0.01 -0.06 -0.04 -0.01 -0.37
-3.6 -5.11 -4.15 -6.32 -4.93 -4.76 0.36 - - - 0.31 -0.04 1.47 0.55 1.11 1.05 0.66 0.31 0.87 1.07 0.32 -0.6 1.11 1.01 0.74 -1.61 -2.06 -0.16 -0.0 -0.0 0.01 -0.09 -0.15
-2.31 -2.5 -3.2 -2.65 -1.92 -1.87 -2.1 -2.23 -2.07 -2.37 1.64 0.4 0.03 0.89 0.12 1.46 0.38 1.87 1.63 1.78 1.73 0.0 -1.41 -0.21 0.63 -1.92 -1.53 -3.57 -3.54 -3.62 -4.33 -2.88 -3.11
-1.94 -1.88 -3.38 -1.86 -3.48 -2.73 -0.02 -4.11 -3.41 -4.3 0.25 0.17 0.58 0.26 0.52 1.4 0.11 0.45 0.49 1.2 0.92 0.41 0.5 0.58 0.66 -1.39 -1.47 -0.2 0.25 0.21 0.65 -0.08 0.32
-0.82 -0.9 -1.0 -1.14 -0.84 -0.33 -0.02 -1.51 -1.37 -0.89 0.66 0.47 0.22 -0.12 0.66 0.13 0.12 0.49 0.41 0.28 0.34 0.13 -0.11 -0.03 0.36 -0.4 -0.29 0.04 0.47 0.62 0.06 0.18 0.4
-4.61 -4.92 -4.25 -4.41 -4.11 -5.27 -1.53 -4.04 -4.02 -2.79 0.89 1.11 0.44 1.29 -0.27 1.39 0.46 0.79 1.29 1.31 1.15 0.46 -0.35 -1.06 1.14 -1.96 -1.4 -0.95 0.17 0.24 -0.61 -0.81 0.11
-5.83 -6.13 -6.64 -4.43 -7.76 -6.31 -0.15 -4.15 -4.9 -5.53 0.89 -0.16 0.68 0.05 0.04 1.67 0.59 0.62 1.41 1.84 1.32 0.28 -0.45 0.82 0.25 -0.87 -0.51 -0.6 -0.19 -0.54 -0.73 -0.59 -0.2
- -7.22 -7.82 -7.21 -6.76 - -0.05 - -3.84 - -0.17 0.34 1.05 -1.12 0.42 1.72 0.2 -0.14 0.28 0.96 0.32 1.24 0.8 0.49 0.98 -5.13 -4.74 0.12 0.39 0.71 0.46 0.18 1.06
-4.43 -3.87 -4.93 -6.49 -3.98 -2.55 0.83 -5.02 -4.43 -5.29 1.04 0.77 0.55 1.79 0.29 1.01 -0.21 1.39 0.68 0.09 0.42 0.99 1.1 0.24 0.17 -1.98 -1.53 -0.47 -0.73 -0.52 -0.58 -0.31 -0.32
-4.62 -4.77 -2.76 -3.74 -2.28 -4.68 1.11 -1.58 -1.21 -2.95 0.49 1.09 -0.16 1.64 -0.02 0.45 0.92 -0.23 0.51 0.35 0.14 1.76 0.65 1.94 0.29 -7.85 -6.94 -0.84 -1.02 -0.59 -1.2 -1.69 -1.05
-4.54 -3.82 -4.0 -4.01 -5.05 -4.88 -0.07 -4.69 -7.35 -4.45 0.44 0.5 0.4 0.05 0.59 1.05 0.83 0.75 1.15 1.18 1.18 0.43 0.27 0.11 0.05 0.1 0.17 -0.1 -0.12 0.12 -0.08 -0.05 0.09
-2.31 -3.14 - -2.78 -2.19 - 0.92 -4.26 -1.93 -1.87 0.5 0.88 0.73 0.37 0.89 0.94 0.68 1.37 0.42 0.61 1.16 1.48 0.16 1.01 0.86 - - -0.94 -0.93 -0.8 -0.78 -1.28 -2.12
- -5.95 -4.27 - - - 0.07 - - - 0.56 1.27 1.32 -2.7 0.93 2.3 -0.29 1.14 0.83 0.84 1.42 0.87 -0.69 0.97 0.69 -2.83 -2.58 -1.09 -1.39 -0.06 -1.75 -1.55 -1.03
-4.31 -3.0 -5.46 -4.55 -6.48 -4.39 0.59 - -7.62 -4.59 0.33 1.06 0.3 0.3 -0.3 1.28 -0.0 0.86 1.11 1.16 0.99 -0.76 0.37 -2.44 0.18 0.06 -0.02 -0.95 0.79 0.79 -0.51 -1.15 1.34
-1.21 -1.47 -2.24 -2.05 -2.56 -2.38 -0.78 -3.84 -2.55 -3.04 0.8 -0.48 0.72 -0.04 -0.11 0.76 0.87 1.12 1.27 0.99 1.24 0.15 0.12 1.59 0.49 -1.43 -0.91 -0.47 -0.65 -0.23 -0.86 -0.86 0.18
-2.94 -3.12 -3.5 -2.93 -3.05 -3.26 -0.23 -4.55 -4.67 -4.64 0.88 0.2 0.69 -0.21 -0.38 0.83 0.71 0.71 1.08 1.2 1.38 0.09 0.52 0.02 0.27 0.07 0.24 -0.16 0.22 0.22 -0.13 -0.5 0.29
-3.38 - - - - - -0.12 - -3.72 - -0.1 1.47 0.72 0.07 1.95 1.16 0.36 0.14 0.55 0.48 1.3 1.08 -1.43 0.32 0.61 -2.34 -4.67 0.27 -0.68 0.24 0.67 -0.5 -0.21
-2.12 -2.62 -1.73 -2.14 -1.84 -1.46 -1.36 -2.26 -1.9 -1.91 1.0 -0.24 0.33 -0.84 1.57 1.37 0.11 1.15 1.41 1.26 1.49 -0.23 0.34 -0.37 0.4 -2.11 -1.57 -0.73 -0.64 -0.47 -0.49 -0.31 -0.55
-6.05 -6.95 -7.21 -10.03 -6.9 - -0.55 -8.09 -7.64 - 0.45 -0.03 0.69 0.41 0.84 1.69 0.48 1.02 1.39 1.09 1.13 0.31 0.38 0.21 -0.14 -0.26 -0.22 -0.39 -0.02 -0.38 -0.25 -0.07 -0.06
-4.27 -6.29 -3.81 -4.49 -2.96 -4.35 0.7 -3.54 -3.82 -4.45 1.02 1.04 1.13 0.76 1.16 1.55 -0.04 0.19 0.6 0.65 0.45 1.32 1.16 -0.18 1.16 -1.06 -0.77 -2.09 -1.26 -1.13 -1.72 -1.9 -0.93
-0.87 -0.97 -0.88 -0.99 -1.53 -0.96 -1.21 -0.47 -1.23 -0.43 1.5 0.31 0.09 1.12 -0.96 1.46 0.22 1.43 1.68 1.42 1.49 0.02 -2.26 -2.4 0.33 -0.69 -0.75 -3.16 -3.25 -3.29 -2.88 -2.93 -3.27
-5.95 -7.27 -5.52 -5.07 -7.36 -9.15 0.59 -7.84 -4.77 -7.99 0.7 0.97 1.3 1.11 1.11 1.58 0.52 0.25 0.63 0.5 0.49 1.06 1.16 1.36 0.78 -3.77 -3.65 -1.37 -1.6 -1.61 -1.35 -1.0 -1.55
-8.56 -8.46 -10.31 -6.62 -6.66 -8.35 -0.02 -6.08 -4.83 - 0.84 0.84 1.28 0.8 0.07 1.86 0.24 0.92 1.01 0.67 1.05 0.63 0.33 0.99 0.47 -1.3 -1.34 -0.71 -0.61 -0.55 -0.74 -0.71 -0.69
-6.74 -8.09 -9.36 -9.18 -7.4 -9.6 -2.35 -7.08 -8.99 -9.21 1.39 0.61 0.07 0.76 0.12 1.68 0.81 1.18 1.85 2.14 1.99 0.33 -0.74 -0.37 0.67 -1.76 -1.51 -3.39 -3.22 -3.37 -3.73 -2.34 -2.82
-1.74 -2.87 -1.9 -1.85 -0.98 -0.48 1.04 -2.3 -0.95 -2.52 0.01 0.33 0.08 -0.0 -1.37 0.58 0.15 0.05 0.78 0.99 0.52 0.4 0.39 -1.0 0.06 -0.06 0.39 -0.23 0.57 0.69 -0.17 -0.52 1.25
-3.54 -3.91 -4.62 -3.51 -4.37 -5.12 0.95 -5.07 -5.96 -3.65 0.69 1.11 0.53 1.44 0.72 1.51 -0.11 0.67 0.6 0.85 0.8 1.06 0.23 -0.2 0.51 -0.72 -0.14 -1.46 -0.91 -0.15 -0.82 -0.92 -0.63
-8.15 -5.78 -7.45 -6.66 -8.34 - -0.93 - - - 0.46 -0.72 0.49 0.47 0.17 1.2 0.87 1.02 1.34 1.44 1.45 0.57 0.82 1.64 0.46 -1.8 -1.67 -0.75 -0.85 -0.29 -0.97 -0.78 -0.02
-0.46 -0.96 -0.87 -1.22 -0.66 -0.48 -0.53 -0.34 -0.5 -0.5 0.69 -0.0 0.71 0.11 0.09 0.68 -0.04 0.26 0.8 0.64 0.75 -0.06 0.08 0.05 -0.23 -0.57 -0.45 -0.37 0.22 0.31 -0.26 -0.39 0.4
-4.74 -4.39 -5.68 -4.47 -4.77 -3.61 -2.97 -2.8 -3.61 -2.13 1.1 -0.06 0.74 1.04 0.11 0.88 0.18 1.21 1.34 0.64 1.25 0.44 0.14 1.61 1.02 -1.42 -1.26 -1.46 -0.48 -0.05 -0.7 -1.2 0.12
-4.26 -4.26 -5.75 -3.87 -5.85 -4.61 0.28 -3.64 -4.72 - 0.37 0.79 0.51 0.16 0.52 1.19 0.41 1.01 1.01 0.88 1.23 0.45 1.2 0.43 0.31 -2.25 -2.16 -0.01 0.03 -0.11 -0.24 -0.43 0.46
-3.28 -6.31 -4.61 -3.95 -4.36 - 0.78 - - -6.11 -0.12 0.99 1.57 0.5 0.42 0.94 0.28 0.9 -0.55 0.62 0.12 0.93 0.59 0.98 0.5 -1.26 -1.44 0.09 0.19 0.32 -0.07 -0.02 0.09
-0.23 -0.64 -0.92 -1.01 -1.07 -0.78 0.41 -1.37 -1.6 -1.32 0.72 0.61 -0.15 1.06 -0.85 0.52 -0.28 0.95 0.56 0.2 0.43 0.54 0.5 -0.21 1.09 -1.29 -1.12 -0.83 -0.21 0.01 -1.67 -1.52 1.18
-2.05 -1.93 -2.02 -2.26 -2.25 -2.06 -0.1 -1.13 -1.18 -0.97 0.62 1.38 0.48 0.78 -0.65 0.18 0.39 0.71 0.43 -0.04 0.58 1.13 0.82 -0.54 1.16 -0.39 -0.3 -0.66 -0.84 0.02 0.06 -0.47 0.02
-0.56 -0.39 -1.15 -1.13 -0.55 -0.12 0.35 -0.79 -0.7 -0.6 0.43 0.27 -0.6 0.85 0.1 0.49 -0.86 0.3 0.55 0.04 0.21 -0.03 0.77 -0.33 0.12 -0.21 -0.34 0.46 0.36 -0.07 0.18 -0.02 0.08
-2.6 -2.43 -2.64 -2.68 -1.87 -3.53 0.22 -0.77 -0.27 -1.69 0.64 1.28 1.09 0.8 -0.77 0.47 0.51 0.66 0.36 -0.15 0.33 1.34 0.91 0.21 1.23 -1.25 -1.14 -0.98 -1.17 -0.3 -0.21 -0.71 -0.37
- -3.65 - - - - -1.6 - -2.17 - 1.88 -0.59 1.13 - 0.3 1.79 0.36 1.0 1.66 1.6 1.23 -0.05 0.62 2.11 1.19 -3.88 -2.59 - - - - - -
-4.76 -5.28 -6.95 -5.87 -6.12 -6.39 0.0 -7.29 -7.88 - 0.84 -0.11 0.32 0.1 -0.06 1.37 0.97 1.2 1.27 1.33 1.4 -0.08 -0.51 0.33 0.01 -0.36 0.15 -0.37 0.06 0.03 -0.16 -0.38 0.22
-6.02 -5.62 -5.08 -4.28 -2.82 -3.28 -2.08 -5.26 -5.6 -4.5 1.34 0.43 -0.53 0.55 -0.57 1.69 -0.01 1.72 1.9 1.98 1.73 0.52 -1.92 0.25 0.49 -0.69 -0.45 -1.54 -1.98 -2.37 -3.38 -2.04 -1.68
-4.5 -5.08 -7.12 -4.84 -5.24 -5.93 -0.57 -7.3 -6.0 -6.41 0.79 0.33 0.66 0.4 0.28 1.41 0.68 0.92 1.28 1.33 1.26 -0.04 0.52 0.29 -0.02 0.03 -0.01 -0.3 -0.58 -0.17 -0.46 -0.16 -0.1
-2.07 -2.1 -1.41 -1.77 -1.1 -1.29 0.17 -2.86 -2.18 -1.62 0.74 1.15 1.46 0.54 0.56 0.21 0.62 0.59 -0.46 -0.82 -0.49 1.06 -0.2 0.84 1.2 -0.94 -0.51 -0.13 -0.49 -0.32 -0.08 -0.57 0.11
-1.18 -0.93 -1.48 -1.65 -1.22 -0.97 0.67 -1.1 -0.87 -1.16 0.16 0.58 1.03 0.66 0.12 0.46 0.23 0.03 0.07 -0.14 0.05 0.72 0.81 1.18 0.07 -0.14 -0.11 -0.38 -0.09 -0.22 -0.51 -0.6 0.01

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.