Heatmap: Cluster_58 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - -3.88 -2.17 - -6.34 - -1.72 3.25 -2.13 3.93 - -7.01 -2.44 -3.68 - - - 0.74 1.6 - -0.13 -1.89 -1.76 -7.11 -2.11 -1.15 -6.43 -4.53 -1.93
-2.69 -1.23 -4.46 -3.0 -4.11 -3.47 -0.31 -2.6 - - -0.65 3.5 -0.94 3.04 - -1.84 -0.55 -3.26 -3.37 -0.43 -1.81 2.39 0.24 - -0.3 -3.04 -2.02 -4.41 -1.71 - - - -1.93
- - - - - - - - - - - - - 5.02 - - -0.92 - - - - - - - - - - - - - - - -
- -4.93 - - - - -5.13 -6.51 -6.08 - -1.32 3.59 -4.35 3.85 -2.27 -0.51 -3.93 -2.54 -2.48 -1.61 -2.17 0.66 -3.03 -4.59 -4.3 -2.71 -2.49 - -0.61 -1.31 -5.77 -7.11 -0.12
-0.63 0.17 - - - - - -0.4 - - - - - 4.66 - - -2.03 - - - - 1.43 - 1.19 - - - - - - - - -
- - - - - - - -1.56 0.87 - - - - 4.85 - - - - - - - 1.0 - - - - - - - - - - -
- -2.28 - - - - - - - - - - - 4.36 - - -4.72 - - - - 3.39 - - - -4.0 - 0.41 - - - -1.51 -
-5.64 -4.65 -6.72 -7.61 -8.5 - -2.81 - -10.89 - 0.51 -0.09 -3.4 3.93 0.31 1.14 -3.59 0.47 0.64 1.03 0.61 -0.59 -5.23 -0.62 -3.52 -3.7 -3.13 -0.05 -1.61 -3.02 0.43 -0.86 -4.03
-3.93 -4.0 -4.58 -2.1 -2.06 -3.92 -1.03 -1.12 -0.1 -0.2 -0.83 1.86 -5.1 4.14 -6.23 -0.47 -4.36 -0.65 -0.98 -0.68 -0.92 1.13 0.22 -1.38 -4.88 -1.06 -1.43 - -9.48 -10.56 - - -5.99
- - - - - - - 1.04 - - - 2.02 - 4.45 - - -4.14 - - - - 2.09 - - - -1.54 -1.58 - - - - - -
-3.48 -2.65 -4.42 -4.98 -6.65 -7.77 -2.98 -9.46 - - 0.8 -0.42 -4.13 4.18 0.33 0.59 -3.48 0.77 0.43 1.14 0.59 -0.51 -6.73 -1.48 -3.64 -3.71 -2.75 -1.94 -3.24 -3.61 -1.82 -3.51 -6.25
-2.72 -1.95 -4.83 -5.78 - - -1.72 -4.88 -6.04 -4.73 -0.43 3.74 0.47 3.7 - - -4.21 - - -5.13 - 0.47 - - 1.17 - -5.44 - - - - - -
- - - - - - -1.66 - - - -0.04 3.91 -8.01 3.45 -5.19 -0.68 -6.03 -1.05 -1.35 -1.34 -1.27 1.54 - -7.18 -1.31 - -9.32 - - - - - -
-8.11 -9.0 -7.9 - -5.36 - -2.4 -2.7 -3.72 -0.64 0.85 2.86 0.56 3.11 -0.82 0.78 -2.04 -0.64 -0.74 -0.59 -1.1 1.77 -2.65 -0.26 1.76 -5.84 -5.92 - - - - - -
- -9.96 -10.79 - -12.0 - -0.55 - -11.24 - 1.22 2.2 -0.49 3.73 -2.52 2.33 -5.66 0.53 0.19 -0.55 -0.26 0.21 -3.5 -4.29 -0.69 -4.38 -4.66 -6.6 -8.59 -8.57 -6.98 -9.85 -8.28
- - - - - - -2.75 - - - -1.73 1.51 1.7 3.64 - -1.78 -2.21 - -1.73 0.3 - 2.99 - -0.25 1.7 - - - - - - - -
-7.97 -9.28 -9.1 -8.81 - - -2.28 -8.33 -7.47 - -1.44 2.46 1.5 3.29 -2.39 -0.89 -0.59 -0.72 -2.05 -2.99 -1.81 2.07 -0.04 1.67 1.54 -2.98 -3.34 -8.8 -7.91 -9.6 - - -2.52
- - - - - - - - - - 0.48 - - 4.61 - - - 2.84 - - - - - - - - - - - - - - -
-7.61 -5.13 -4.92 -11.2 -8.71 - 0.87 - - - -0.78 2.18 -2.47 3.11 -3.07 0.87 -3.57 2.22 1.85 1.46 1.04 -1.23 -1.49 -1.66 -1.72 -1.65 -1.47 - - - - - -
- -5.57 - -4.07 - - -2.03 - - - -1.29 3.48 -2.23 3.6 -5.83 -4.92 -2.71 - - - - 1.04 1.76 - 0.18 -1.25 -1.7 -5.32 -1.4 -0.93 - -4.52 -1.59
-11.78 -7.25 -9.23 - -10.11 - -4.31 - -8.79 - -0.21 -1.07 -6.39 4.32 -4.97 1.41 -0.53 0.91 0.41 0.45 0.38 0.88 -7.5 -5.6 -6.21 -1.79 -2.85 -7.57 -9.68 -8.98 -7.63 -6.52 -9.66
- -7.06 - -6.31 -8.15 - -3.09 - - - -1.33 2.64 0.16 3.33 -1.42 0.73 -1.98 -1.57 -1.45 -0.5 -1.27 2.35 1.05 -3.78 0.58 -2.51 -2.13 -3.06 -1.78 -1.65 -2.49 -2.84 -0.4
-3.88 -1.36 -4.7 - -2.19 - -0.22 - - - -1.24 2.41 - 3.6 - 0.74 -2.34 1.22 1.5 -3.27 0.35 1.28 0.61 0.28 - - -5.08 - - - - - -
- - - - - - - - - - -1.71 3.2 -5.42 4.47 - - -3.22 - - - - -0.61 -5.07 - -1.33 -6.45 -3.91 - - - -8.17 - -
- - -4.58 - - - -2.23 - - - - 3.54 -0.91 3.95 - - -2.9 - - - - 2.13 -1.3 - - - -2.67 - - - - - -
- - - - - - -3.23 - - - 1.52 0.43 -3.1 3.67 1.33 2.94 -6.12 0.99 -1.68 1.29 -1.05 -1.67 - - -5.31 -4.64 -3.87 - - -6.47 - - -
- - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - -
- - - - - - 0.34 - - -0.83 -4.29 1.33 -4.25 3.97 - -1.11 -2.0 0.13 0.74 0.42 0.45 -0.24 - 0.6 - -2.05 -4.71 -1.08 - - 0.14 1.25 -3.58
- - - - - - - - - - -2.18 3.46 -2.65 3.62 -0.57 -0.07 -4.6 - -3.18 -3.25 -1.63 0.66 -1.27 - -3.12 -0.55 -1.01 - 0.42 -0.7 - - 0.96
- - - - - - - - -2.21 - - 2.12 - 4.09 - - - - - - - 3.52 - - - - - - - - - - -
- - - - - - - 2.01 - - - - - 4.86 - - - - - - - - - - - - - - - - - - -
0.2 - - - - - - 0.43 - - - - 0.22 4.08 - - 0.95 - - - - 2.26 - 2.02 - -0.81 - - - - 0.06 - -
- - - -6.32 -5.72 - -4.79 -1.89 - - -3.84 3.33 - 3.44 - - -1.59 - - - - 2.91 -0.61 -1.99 1.18 -3.57 -0.84 - - - - - -
-9.97 -7.51 -10.56 -10.85 -6.59 -6.05 0.36 - - - -1.05 3.41 -1.41 3.34 -2.4 -0.78 -2.19 -2.13 -2.64 -1.95 -2.26 2.52 -0.74 -2.18 0.22 -2.08 -1.89 - - -9.19 - - -5.28
-0.5 0.12 -3.69 -2.58 - - -2.53 -1.32 -2.4 -1.19 - 2.56 - 3.96 - -1.56 - - -0.5 0.51 - 0.09 1.73 - - -0.6 -0.77 -2.55 - - - - -
- - - - -2.44 - - -1.0 -1.15 - -1.25 - 1.38 4.11 - - -1.08 - - - 2.12 -0.16 - - - -2.4 -0.36 -1.22 - 1.32 0.64 - -1.13
- - - - - - - - - - - - - 4.83 - - -0.99 - - - - - - - - - - - - - 2.03 - -
- - - - - -7.43 -5.11 - - -4.75 -3.48 3.32 -5.13 4.1 0.78 -2.99 -4.13 - -3.79 -7.31 -4.47 1.77 -3.64 -5.89 -2.79 -5.18 -5.73 -5.93 - - -7.25 -8.38 -8.2
- - - - - - - - - - - - - 4.83 - - 0.85 - - - - 1.01 - - - -1.26 -1.27 - - - - - -
- - - - - - - - - - 2.75 - - 4.72 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - 2.57 - 4.22 - -0.58 - - - -0.59 -0.55 2.02 - 0.74 - -4.07 -0.75 - - - - - -
- - - - - - - - - - - - - 4.54 - - -4.42 - - - - 3.23 - - - -3.32 -2.2 - - - - - -
-1.04 -2.45 -2.56 -4.15 -4.7 - 0.46 - - - -1.11 2.52 -3.44 3.36 - 0.55 -4.09 0.96 1.37 0.35 2.0 0.26 -1.9 - -1.32 -4.8 -3.22 -3.09 -3.2 -2.32 -1.45 - -
-6.91 -4.9 -6.63 -0.71 -0.47 0.3 -3.63 -2.61 0.49 -2.31 -3.89 1.83 -4.33 3.57 -4.24 -4.6 -4.41 - -3.69 -3.93 -4.9 3.46 -4.95 - -0.4 -1.69 -0.91 - - -6.79 -6.92 -5.28 -
-3.04 -1.51 -4.76 -5.57 -6.86 -5.86 -2.4 -3.99 -3.63 -3.86 0.76 1.05 -2.07 3.11 1.3 1.73 -4.25 0.52 0.76 1.02 0.68 -1.77 -3.37 -2.96 -2.15 -0.75 -1.04 0.04 -0.25 -1.4 0.97 -0.59 -3.1
-4.35 -6.06 -7.09 -9.33 - - -0.03 -9.46 -6.53 -3.36 -1.59 3.46 -4.04 3.35 -0.7 0.46 -3.54 -2.38 -2.12 -0.21 -2.06 2.11 -5.67 1.07 -2.6 -7.17 -5.08 - - - - - -
- - - - - - - - - - - 4.04 - 4.05 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - -
- -6.77 -3.77 - - - -2.15 - - - -5.21 0.89 -5.16 4.4 - - -3.35 - - - - 2.41 - -2.36 - 0.28 0.22 -0.58 -1.24 -3.52 -2.01 -4.92 -2.25
- - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - -
- - - - - - - -1.51 - - - 3.14 - 3.59 - - -3.59 - - - - 2.42 - -0.91 2.55 - - - - - - - -
- - - - - - - - - - - - 3.21 4.27 - - -0.63 - - - - - - 1.21 - - - - - - - - 0.49
-3.16 -0.46 - -5.32 -4.29 - 0.25 -1.9 -2.1 0.27 -0.19 3.51 - 3.3 -1.95 -0.24 -3.63 0.24 -0.67 -2.05 -0.9 0.94 - -3.24 -3.54 -6.23 -4.06 -2.53 -1.99 -1.99 -3.61 -3.09 -1.94
- - -1.77 - - 0.95 - - - - - - 3.06 3.84 - - 1.37 - - - - 0.58 -0.37 1.31 - -0.41 - - - - - - -
-2.88 -4.39 -3.1 -4.16 -4.17 -4.54 1.4 -8.45 -7.1 - -0.37 2.33 -2.42 3.31 -4.44 0.72 -4.54 2.06 1.45 1.17 0.56 -1.57 -1.26 -1.77 -1.88 -2.91 -2.39 - - - - - -
- - - - -3.79 - - - - - 1.54 3.38 0.04 3.53 0.54 0.03 -4.21 - - - - 1.77 - -1.72 -0.43 - - - - - - - -
- - - - - - - - - - - -0.62 - 4.45 - - - - - - - 3.33 - - - - -1.21 - - - - - -
- - - - - - - - - - - 3.45 - 4.12 - - 0.19 - - - - 1.74 - - - -2.34 - - - - - - -
-2.94 -2.32 -3.86 -7.04 -5.49 -8.05 1.31 -8.61 -7.8 - -0.78 2.56 -3.26 3.69 -5.03 0.23 -4.41 1.38 0.93 0.59 0.45 -1.05 -1.39 -1.92 -2.94 -1.61 -1.36 - - - - -8.66 -
- - - - - - -5.07 - - - -0.53 1.9 -6.83 3.91 1.72 0.82 -7.12 0.12 0.63 -0.21 0.81 0.13 - - -2.91 -1.18 -1.36 -1.43 -2.06 -5.88 -1.96 -2.34 -4.71
-3.95 1.09 -5.16 -4.59 -7.27 - 2.59 - -8.31 -7.64 -6.23 -1.59 - 3.27 - -5.58 -5.8 -4.42 -7.33 -8.39 - 3.84 -5.25 -2.85 -3.74 -5.13 -4.98 - - -7.36 - - -8.28
-5.06 -3.23 -5.9 -7.16 -9.66 -7.33 -2.09 -7.87 -5.55 -5.73 0.81 1.38 -1.94 2.93 1.5 1.5 -3.88 0.57 0.93 1.45 0.84 -1.55 -2.38 -3.18 -2.06 -0.86 -1.21 -0.03 -0.31 -1.29 0.89 -0.63 -2.8
-3.65 -4.76 -2.96 -4.05 -4.02 -4.74 1.27 -6.26 -6.81 - -0.57 1.77 -3.35 3.31 -5.08 1.08 -4.04 2.12 1.46 1.49 1.04 -1.54 -1.28 -1.64 -2.5 -1.56 -1.71 - - - - - -
- - - - - - - - - - - 2.34 - 4.57 - - - - 1.29 - - -0.83 0.19 - - - - - - - - - -
- - - - - - - - - - - 3.47 - 3.9 - -0.98 -3.27 0.92 -0.92 - - 1.18 -2.02 - -0.12 - -2.59 - - -2.85 - - -1.88
- - - - - - -1.05 - - - 0.47 2.52 -6.15 3.94 -1.31 1.52 -6.61 0.26 0.47 -0.3 0.21 0.9 -5.46 -3.32 -3.43 -4.98 -5.56 -6.55 -7.71 -6.93 -7.0 -7.96 -8.2
- - - - - - - - - - - - - 4.62 - - - - - - - 3.07 - - - - -4.39 - - - - - -
-4.6 -3.5 -5.58 - -8.4 -7.4 1.68 -9.05 -7.61 - -2.43 2.21 -3.69 3.77 -8.19 -4.82 -4.87 -4.42 -4.9 -6.7 -4.56 3.13 -0.04 -6.45 -1.32 -1.38 -1.42 - -5.78 - -8.06 - -
- - - - - - - - - - - - - 4.65 - - -0.7 - - - - - - - - - - 1.81 1.25 0.47 - - -
- -7.35 - - - - - -8.23 - - -0.05 1.91 -0.43 3.93 -5.79 0.55 -2.12 -0.47 -1.14 -1.23 -0.47 2.31 0.51 -3.83 0.77 -5.12 -3.6 - - - - - -
- - - - - - - - - - - - 2.47 4.53 - - -1.75 - - - - 2.02 - - - - - - - - - - -
-3.61 -7.55 - - - - -1.37 -6.6 - - -1.6 0.06 0.17 3.53 - -1.92 -1.31 -2.24 -2.34 -3.43 -4.15 3.1 -0.02 2.6 -0.07 -2.89 -1.4 -5.56 -5.47 -6.88 - - -2.8
- - - - - - - - - - - - - 4.84 - - - - - - - 2.15 - - - - - - - - - - -
- - - - - - - - - - -1.63 3.54 - 4.04 - - -2.51 - -0.69 - -0.14 - - - 0.37 -1.92 0.44 - - - - - -
- - - - - - -1.55 - - - 1.09 3.75 - 3.67 - 0.04 -3.43 -1.56 - -0.59 - 1.12 - - - - - - - - - - -
- - - - - - -3.17 -5.15 - - -0.31 3.86 -0.42 3.61 - - -5.06 - - - -4.36 0.98 - - 1.31 - -6.98 - - - - - -
- - - - - - - - - - - - - 4.91 - - - - - - - - - - - - - - - - - - 1.59
- - - - - - -1.21 -10.7 - - 1.02 2.43 -1.05 3.68 -2.23 2.11 -4.9 0.91 0.61 -0.44 -0.05 0.39 -4.0 -2.45 -1.28 -3.47 -3.94 -6.85 -7.61 -7.29 -6.74 -9.05 -8.0
- -6.46 - - -7.94 -5.7 - -7.35 -5.5 -3.95 0.71 2.07 0.49 3.78 -4.49 -0.22 -2.51 -0.89 -0.61 -0.6 -0.7 2.37 -1.22 -5.74 1.42 -9.84 -7.27 - - - - - -
-1.01 0.72 -2.65 -3.12 -4.76 -6.6 2.28 -5.59 -4.94 -5.28 -1.97 1.37 -1.71 3.5 -4.95 -2.08 -4.39 -2.66 -3.22 -2.71 -3.48 3.05 -0.68 -0.49 -1.55 -4.21 -5.29 -5.23 -2.85 -4.36 -5.93 -8.45 -4.69
- - - - - - - - - - - - - 4.98 - - 0.47 - - - - - - - - - - - - - - - -
- -2.84 -3.66 - - - 0.83 - - - -0.66 2.57 -0.6 3.41 0.84 1.22 -0.01 -0.26 -1.04 -0.62 -1.07 0.19 0.94 -2.0 -0.13 -0.94 -0.3 - -4.35 - - - -
- - - - - - - - - - - 1.82 - 4.49 - - - - - - - 2.79 - - - - - - - - - - -
-4.21 -3.11 -6.45 -6.7 -7.2 -7.13 -0.31 -4.35 -6.28 -2.25 -0.3 3.41 -6.39 3.76 - 0.02 -4.55 -0.67 -1.78 -1.58 -0.12 1.1 - -3.36 -2.02 -7.69 -4.87 -3.57 -2.66 -2.51 -3.19 -3.88 -1.38
- - - - - - -0.99 - - - - - 1.01 4.32 - - - - - - - 3.11 - -0.19 0.1 - - - - - - - -
-2.06 -0.72 -2.14 -3.32 -4.81 -4.9 1.2 -5.26 -5.42 -3.92 -1.48 3.24 -0.52 3.31 -4.49 -1.77 -4.19 -3.42 -2.94 -1.67 -1.38 1.86 -1.51 - 0.7 -0.69 -0.26 -6.79 -2.92 -3.12 -5.36 -5.65 -2.01
- - - - - - - -1.69 - - - - -0.73 4.7 - - 0.23 - - - - 2.1 - - - -0.99 -4.09 - - - - - -
- - - -6.55 -5.77 - -4.99 -4.81 -2.39 -4.4 0.76 3.45 -5.05 3.61 - -0.05 -4.64 0.02 0.46 -1.25 -0.71 1.26 - - -0.02 - - - - - - - -
- - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - 4.54 - - - - 3.29 - - - - - - - - - - - - - -
-2.01 -1.2 -2.3 - -4.05 -2.34 0.23 -2.54 -1.91 0.03 -0.55 3.17 - 3.66 - - -5.35 - - - - 1.96 - 1.3 -2.73 -2.55 -1.86 - - - - - -
- - - - - - -1.25 - - - - 0.99 2.62 4.28 - - 0.74 - - - - 1.19 - - - -3.48 -2.6 -2.74 - - -1.44 -1.79 -
- - - - 0.19 - - - - - - - 1.61 4.58 - - -0.74 - - - - 0.56 - - - - - - -0.53 - -0.6 - 0.52
- - - - - - - - - - - - - 4.78 - - - - - - - 2.46 - - - - - - - - - - -
-2.38 -1.18 -4.39 -5.27 -6.0 -4.34 -2.12 -3.12 -2.34 -3.41 0.85 1.04 -2.11 3.19 1.24 2.0 -4.46 0.81 0.87 0.89 0.69 -1.94 -3.19 -2.91 -2.43 -1.48 -1.89 -0.48 -0.71 -1.77 0.55 -1.15 -3.43
- - - - - - - - - - - - - 5.03 - - -2.07 - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.