Heatmap: Cluster_325 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-0.14 0.7 -0.45 -0.5 -0.38 0.36 0.22 -0.39 0.4 0.87 - -0.89 -1.31 -0.91 - -3.26 3.07 - -4.94 - - -2.32 -3.81 -3.16 -1.46 0.6 1.09 -0.58 -0.3 0.74 0.52 0.58 0.47
-6.64 -5.25 - -6.72 -6.3 -4.07 -1.96 - - - -4.21 -0.18 0.51 -2.03 -4.93 -2.32 3.63 -2.16 -5.96 -4.44 -4.41 -0.77 -3.25 -1.23 -0.47 1.21 1.67 -0.15 0.06 0.95 0.79 1.23 0.81
-1.69 -1.9 -1.33 -0.91 -0.88 0.18 -3.79 0.71 0.3 0.43 -0.58 -1.74 -0.21 1.12 -1.39 -0.16 3.11 -0.28 -0.38 -1.61 0.28 1.48 -3.22 -5.21 0.09 -1.11 2.0 -6.28 -7.08 -6.92 -7.18 - -
- -3.63 -3.72 - - - -3.21 -3.04 - - - - 1.77 - - - 4.28 - - - - - -1.24 - 2.84 -3.4 1.06 - - - - - -
-1.56 -1.66 -2.68 -3.66 -5.04 - 0.16 - -2.9 -2.42 -0.0 2.62 2.06 0.58 - - 3.28 -1.18 -3.74 - -2.77 0.66 -1.66 -1.15 2.25 -4.97 -1.6 - - - - - -
- - - - - - - - 1.75 - - - - - - - 4.45 2.83 - - - - - - - -0.51 - - - - - - -
-0.53 0.0 -1.74 -1.22 -1.89 -1.45 -1.73 -1.1 -1.73 -1.29 0.53 -0.6 0.02 -0.89 -0.46 0.17 1.43 0.81 1.05 0.27 0.61 -1.08 -0.33 -3.09 0.77 0.85 0.97 -0.18 0.21 0.45 0.1 0.2 0.3
-0.51 -1.16 -0.94 -0.91 -1.68 -1.61 0.55 -0.48 -0.63 -1.18 -0.02 0.16 0.05 0.27 -1.63 -0.18 0.85 -0.28 -0.15 -0.12 -0.43 -0.41 0.14 -2.22 0.49 0.23 0.29 0.66 0.41 0.66 0.87 0.94 1.04
-0.43 -0.49 -0.23 -0.41 -0.45 -0.58 -1.54 -0.22 -0.06 -0.72 0.19 -0.63 -0.81 -1.03 -0.49 -1.08 1.28 0.64 -0.0 0.26 0.24 -0.89 -1.0 -0.34 0.02 0.91 1.15 0.23 0.23 0.5 0.3 0.14 0.42
- -3.55 - - -5.17 - - - - - - -4.55 1.15 -2.96 - - 4.44 - - - - - -2.08 -2.21 0.78 1.31 2.03 - - - - - -
0.3 -0.64 -3.69 -0.69 -1.0 -1.07 -0.1 1.1 0.16 -1.34 1.0 - 0.88 - - 0.37 3.39 0.53 - -1.0 - - 1.72 - -0.35 0.55 0.82 - - - - - -
-0.37 -0.74 -0.95 1.43 1.62 0.96 -0.54 -1.34 0.84 0.58 - 1.83 -0.57 1.83 - - 2.82 - - - - - 1.71 - -0.45 - -2.81 - - - - - -
-4.48 -5.76 -5.43 -3.2 -4.68 -7.11 -2.96 -5.16 -7.31 -2.51 -2.19 1.68 0.86 2.0 -5.31 -4.14 2.63 -2.98 -1.49 -2.42 -2.45 -0.54 1.66 -2.51 1.39 -0.27 0.31 -1.8 0.84 1.23 -1.3 -3.14 1.28
- 0.38 - -1.65 - - - 0.5 -1.27 -0.3 - - - - - - 4.06 - - - - - - 1.1 - - - 1.36 - 0.15 1.32 1.31 0.37
-5.4 -5.68 - - -8.03 - -5.23 - - - - -3.55 2.35 -4.05 - - 4.06 - - - - -6.42 -1.01 -4.54 0.81 2.02 2.21 - - - - - -
-6.88 -6.21 -7.31 - - - -1.7 - - - -5.82 0.14 1.3 -2.3 - - 3.34 - -7.79 - - -3.33 -1.85 -2.28 1.25 2.94 3.02 - - - - -7.58 -8.73
- - - - - - - - - - 3.03 - - - - - 3.09 - - - - - - - - - - - 1.98 3.14 - - 1.84
-2.25 -2.62 -2.21 -1.58 -1.42 -1.39 -3.02 -0.08 -0.18 0.17 -2.85 -0.72 1.94 -0.07 -3.77 -2.82 4.01 -1.52 -3.03 -3.79 -3.02 -2.32 -1.4 -3.59 0.84 -2.7 1.65 - - - - - -
- - - -8.31 -7.74 - -2.94 - - - -5.93 -0.65 2.38 -2.82 - - 3.8 - - - - -3.36 -0.91 -2.94 1.19 2.29 2.34 - - - - - -
- - - - - - -1.37 - - - -1.41 - -1.39 2.56 - - 2.99 -0.24 -0.34 - - -0.02 1.44 - - 0.23 -0.94 -0.41 -1.33 1.44 0.5 0.8 1.99
-5.02 -5.84 -5.58 -6.81 -6.68 -6.16 -2.38 -4.21 -7.44 -6.45 0.14 -0.3 0.28 -0.6 -0.78 0.03 2.27 -0.91 0.0 -0.33 -0.81 -0.28 -0.69 -2.79 1.22 1.38 1.9 -0.91 0.63 1.39 -0.87 -0.4 1.71
0.16 -0.02 -3.66 -2.06 -2.21 -5.38 0.03 -3.26 -3.64 -4.08 -4.34 -0.24 2.38 -0.91 - - 3.92 - - - - -1.8 0.1 - 1.58 -2.96 1.52 - - - - - -
-2.97 -3.23 -5.77 - -4.7 -4.34 -1.0 -4.76 -5.67 - -0.65 -0.53 1.21 -1.11 -0.79 -2.29 2.35 -3.3 -1.27 -1.98 -1.31 -0.39 0.07 0.66 0.53 1.46 1.75 0.97 0.89 0.39 0.9 0.41 0.73
-0.95 -0.94 -1.42 -1.45 -1.41 -1.42 -0.34 -1.8 -1.97 -2.38 -0.05 -0.27 0.28 -0.08 -0.17 0.06 1.18 -0.07 0.46 0.33 0.21 0.32 0.28 0.34 0.47 0.27 0.54 0.1 0.66 0.84 0.37 0.39 0.31
-2.71 -2.36 -2.46 -2.59 -2.63 -1.78 -0.27 -3.31 -2.97 -3.11 0.08 0.12 -0.15 0.23 0.07 0.13 1.49 0.51 0.57 0.32 0.56 -0.16 0.58 -1.12 0.9 0.59 0.8 0.07 0.51 0.79 0.34 0.12 0.44
- - - - - 0.46 -0.35 - -0.74 - -0.3 - 3.5 - - 1.58 1.77 - 2.22 - - 1.99 0.55 - 0.71 - - - - - - - -
- - - - - - - - - - - - 1.57 - - - 4.06 - - - - - 2.53 - 2.69 - 0.18 - - - - - -
-2.97 -4.03 -4.01 -4.4 -3.96 - 0.29 -3.11 -4.02 - -0.46 0.26 -0.51 -1.2 -0.02 -0.83 2.5 -1.8 -0.9 -1.29 -2.26 -0.07 0.68 -0.2 0.36 1.56 1.84 -0.24 0.73 0.84 -0.16 0.18 0.98
-7.33 -5.76 -8.62 - -10.02 - -2.36 - - - 1.31 -3.55 0.22 -3.54 0.26 0.62 1.41 1.35 0.77 -1.03 0.78 -1.44 -3.56 -3.21 0.05 0.39 0.86 1.22 1.19 0.76 1.26 1.14 0.59
- -6.39 - - - - -3.54 -7.93 - - 1.02 -4.77 0.38 -3.08 -0.1 0.58 1.35 1.05 1.02 -0.56 0.71 -1.1 -3.88 -3.16 -0.07 0.39 0.72 1.24 1.29 0.82 1.37 1.32 0.85
- - - - - - -3.2 - - - 0.82 -4.96 0.39 -1.15 -0.25 1.06 0.94 0.76 0.92 -0.35 0.81 -1.51 -3.5 - -0.22 0.85 0.74 1.4 1.37 0.56 1.35 1.32 0.87
-1.53 -3.14 -2.58 -2.33 -2.43 -2.23 -1.81 -1.16 -1.5 -2.42 -0.28 -0.6 0.21 1.71 -0.14 -0.05 2.92 -3.06 0.56 0.31 -0.04 2.11 -2.41 -6.97 0.54 0.53 1.84 - -3.77 -3.09 -5.2 -4.85 -3.36
-3.04 -3.14 - - -4.78 - -0.67 -3.11 - - - 1.91 -1.6 2.82 - -1.1 2.62 -2.26 -2.36 -2.43 - 0.27 1.24 - -0.3 1.3 0.92 -3.65 -0.71 1.15 - -1.75 0.76
- - - - - - - - - - - - 0.16 - - - 3.01 1.31 - 1.14 - 0.14 - - 1.28 0.92 0.9 -0.08 1.22 1.28 0.37 2.29 -
-1.91 -1.73 - - -1.57 - - -1.02 -2.76 - - - 2.15 - 1.41 - 2.16 - 0.8 -0.27 0.76 -1.27 -0.3 - -1.31 -0.99 0.28 -0.25 1.79 0.71 1.37 0.75 1.04
- - - - - - - 2.63 - - - - - 3.41 - - 4.02 - - - - - - - - - - - - - - - -
-3.5 -3.06 -3.7 -2.23 -2.5 -2.71 -1.91 -1.65 -1.39 -1.33 0.7 0.52 0.08 0.23 0.19 -0.26 0.54 0.59 0.5 0.58 0.47 -0.18 -1.09 -0.09 0.81 -0.16 -0.07 0.88 0.46 0.82 0.71 1.07 0.74
-1.33 -1.69 -1.48 -0.82 -1.4 -0.93 0.09 -3.01 -3.03 -1.6 0.66 0.19 0.77 0.0 0.2 0.61 1.12 -0.21 0.08 -0.05 0.01 0.67 0.47 0.09 1.32 0.36 0.5 -0.4 -0.07 -0.16 -0.02 -0.23 -0.0
-3.84 -3.41 -3.86 -3.69 -4.26 -3.74 -3.79 -3.95 -3.08 -3.92 0.51 -1.5 1.13 -2.02 0.11 -1.05 2.17 -0.25 -0.18 -0.08 -0.33 -1.2 -0.56 -2.34 0.88 1.47 1.66 0.51 0.4 0.76 0.73 0.85 0.58
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
-2.97 -3.19 -3.94 -5.11 -4.85 -5.7 -1.57 -9.03 -5.29 -3.13 0.14 -0.38 -0.42 -0.47 -2.24 -0.95 2.26 -0.74 0.05 -1.04 -0.13 -0.62 -0.3 -0.17 0.72 1.2 1.35 0.63 0.34 0.34 0.67 0.79 1.99
-4.44 -4.99 -4.52 -5.48 -6.21 -6.28 0.77 -6.0 -5.84 -6.55 0.52 0.73 1.44 0.35 -1.82 1.06 0.47 -0.25 0.31 0.4 0.1 -0.36 0.85 -0.06 0.82 0.09 0.1 0.52 0.36 0.29 0.37 0.56 0.71
- - - - - - 1.98 -0.86 0.57 - - 0.99 -0.06 - 1.58 2.53 2.15 - -0.04 -0.1 2.56 -0.94 - - 1.03 -2.96 -1.33 - - - - - -
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - - - - - - - - - - - -0.63 - - - 2.97 - - - - - - - - 1.13 0.93 1.2 2.31 2.81 0.66 - 2.2
- -3.52 -4.26 - - - -0.72 -3.7 - - -0.71 1.84 -0.22 1.54 -0.53 -1.94 2.14 -2.78 -2.88 -1.95 -1.92 0.39 0.93 -1.11 0.88 1.57 1.05 - 0.42 1.16 - -0.89 1.75
-6.34 -4.59 -3.48 -4.35 -3.63 -3.3 -3.2 -4.51 -5.68 -2.47 -3.37 1.74 1.59 1.68 -5.27 -3.24 2.02 -2.78 -3.56 -3.63 -5.33 -0.43 1.95 -1.59 0.85 -0.72 0.12 -0.9 1.29 1.41 -0.35 -1.33 1.51
-2.9 -3.13 -3.39 -3.22 -2.4 -2.25 -2.19 -1.88 -3.15 -0.27 -1.07 1.24 0.14 1.26 -0.21 -1.76 1.67 -1.54 -1.3 -0.68 -1.23 -0.33 0.54 -2.21 0.48 0.63 0.9 1.21 0.92 1.08 0.8 0.35 0.7
- - - - - - - - - - - - - - - - 3.95 - - - - - - - - 1.28 - - 1.83 3.54 - - -
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - - - - - - - - - -2.68 1.66 2.07 - 3.24 -0.33 2.64 - - -3.4 -2.14 -0.4 1.6 -2.33 2.01 -1.6 -1.54 - - - - - -
- -5.48 - - -7.3 - -4.3 -5.9 -6.06 - -4.24 1.21 0.36 -0.46 0.71 -2.05 3.61 - - - -3.11 1.43 2.15 0.12 1.5 0.7 0.7 - -7.17 -6.17 - - -6.03
- - - - - - - - - - - -2.7 -0.39 - 1.78 -0.98 4.25 - - - - -2.46 2.93 - -0.14 -4.43 - - - -2.74 - - -2.5
- - - - - - - - - - - - 2.24 - - - 3.97 - - - - - 1.38 - 2.86 -0.77 1.1 - - - - - -
- - - - -3.43 - - -4.64 - - - - -0.85 - - - 4.99 - - - - - -3.91 - - - -1.0 - - - - - -
-3.22 -5.58 - - - - -3.57 - - - -0.44 -2.52 2.23 1.49 - -1.01 3.49 -1.11 -0.08 -0.6 -0.25 2.38 -1.05 -2.76 1.38 -3.2 -0.66 -4.83 -3.35 -4.51 -2.66 -2.54 -
-4.49 1.18 -1.78 -5.21 -5.74 - 0.71 - - - -1.3 3.12 -0.41 0.28 -2.41 - 3.0 - - -3.51 - -1.03 -2.54 -2.08 0.21 1.92 1.82 - - - - - -
- - - - - - - - - - - -0.03 2.93 -0.02 - - 4.32 - - - - - - - 1.19 -3.37 0.07 - - - - - -
-2.99 -2.7 -4.87 -6.31 -5.63 -6.28 -2.09 -5.98 -7.55 -6.76 0.16 -0.04 0.85 -0.26 -0.5 0.38 2.94 0.37 0.06 -0.11 0.32 -0.03 -4.68 -1.4 0.23 0.97 1.28 -0.71 -0.28 0.39 0.5 0.25 0.2
-3.82 -3.88 - - -4.4 - -2.14 - -2.49 - - - 2.5 0.24 - - 3.76 -0.42 - - - -1.06 -1.2 -0.01 0.28 0.02 0.61 0.65 -0.42 -0.33 -0.04 0.12 -1.0
- -5.8 - -0.1 - - -3.22 - - - - - 0.57 - - - 2.79 - - - - -4.27 4.27 0.27 0.86 -4.0 0.17 - - - - - -
- - - - - - - - - - - - - - - - 3.86 - - - - - 4.21 - - - - - - - - - -
-3.78 -2.22 -3.44 -3.72 -3.54 -2.69 -0.77 - -2.95 -2.63 -0.6 -0.23 0.2 - -0.02 -0.63 2.73 -2.47 -0.18 -0.05 0.2 -0.19 1.56 -3.8 -0.11 1.33 1.2 0.06 0.13 0.11 -0.37 0.2 1.35
-3.53 -0.94 - - - -0.6 -0.5 -0.99 -0.07 - 0.93 -2.46 1.06 -1.46 -1.45 0.91 2.33 - -1.49 0.62 - -0.35 0.74 - - -0.02 0.32 0.88 0.49 -0.15 1.21 1.81 0.3
- -0.97 - - - - 0.81 - - - - 0.82 1.76 - 1.83 1.74 2.98 - - - 0.77 -0.27 1.71 - - 1.15 0.89 -0.1 - - - - -
- - - - - - -1.41 - - - -0.4 -1.48 -0.28 0.47 - 0.9 3.32 -0.28 0.5 -4.15 0.79 -1.2 3.3 - 1.47 -3.36 -2.47 - -4.18 - - - -3.96
- - - - - - - - - - 1.47 -1.56 2.13 -6.31 0.68 -0.33 3.54 0.12 0.03 -0.48 -0.57 -0.95 1.16 -3.39 2.21 -2.85 -1.77 - -7.15 - -7.53 - -6.25
- - - - - - -3.95 - - - 0.43 -4.77 -0.07 - -0.62 0.16 1.1 0.2 0.56 -0.92 0.9 -1.64 - -4.02 -0.45 0.42 0.71 1.65 1.69 1.08 1.62 1.77 1.39
-4.27 -4.84 -4.59 -5.34 -2.83 -4.54 1.9 -5.4 -5.33 -5.59 -5.13 -0.73 0.33 -2.58 -6.16 -6.25 3.15 - - - - 1.37 -0.64 -1.09 1.5 1.69 2.16 -1.67 -1.25 -1.0 -3.66 -1.55 1.02
- - - - - - - - 0.7 - 1.0 - - 2.1 - - 3.34 2.18 - 2.01 - - - - - - - - 0.98 1.1 - - 1.2
-1.19 -3.15 -2.01 - -1.78 - -0.53 - - - 0.24 0.52 -0.56 1.59 - - 4.22 - - -0.57 -0.54 -1.57 1.47 - 0.56 - - - -1.6 - - - -
-2.77 -1.74 -5.61 -4.7 -4.0 -3.96 -1.57 -5.65 - -3.94 0.29 -0.5 -0.39 -1.15 -2.3 -0.7 1.92 0.9 0.43 -0.03 0.69 -1.74 -0.47 0.03 -0.37 1.04 1.55 0.79 0.61 0.95 0.77 0.71 1.06
- - - - -1.16 - -1.5 -1.34 1.21 - - - 1.15 - - - 3.78 - - - - -1.42 -0.6 -0.73 - 1.39 2.57 0.0 -1.6 - - -1.64 0.77
- - - - -0.83 - - - - - - - - - - - 3.88 - - - - - 4.15 - - - - - - - - - -
- - - - - - - - - - - - 2.16 - - - 4.15 - - - - - 0.4 - - 1.69 2.64 - - - - - -
-0.75 -2.71 - - - - - - - - - - - - - - 4.25 - - - - - 3.0 - - -2.08 -0.65 - -1.16 -0.1 -0.02 - 0.99
-3.1 -3.31 -4.08 -3.67 -5.61 -3.47 0.42 -5.14 -3.16 -3.66 0.14 0.51 0.42 0.38 -1.3 0.05 0.7 0.16 0.26 0.12 -0.34 0.04 0.44 -0.95 0.81 0.42 0.46 0.8 0.88 0.81 0.83 0.93 1.1
-0.74 -0.98 -0.42 -1.28 -1.98 -0.92 0.19 -0.74 -1.18 -1.64 0.78 0.24 0.05 -0.61 -2.67 -0.09 1.54 0.47 0.75 0.33 0.77 -0.17 0.24 0.03 0.4 0.61 0.77 -0.43 -0.07 0.03 -0.69 -1.01 0.43
- - - - - - - - - 0.32 - - -0.15 - - - 4.68 - - - - - 2.37 - - - -2.97 - - - - - -
- - - - - - - - - - - - 1.27 - - - 4.85 - - - - - - - 0.79 - -3.49 - - - - - -
- - - - - - - - 2.57 - - - 1.9 1.99 - - 4.04 - - - - - - - - - -0.37 - - - - - 1.08
- - - - -8.74 - -8.07 -6.02 -8.02 - -2.01 -5.22 0.55 -5.43 -5.02 -3.02 3.67 -2.94 -2.88 -4.41 -2.5 -3.82 -0.53 3.33 0.13 -2.84 -0.88 0.88 -3.08 -2.98 -0.3 0.71 -0.53
-2.96 -2.5 -2.68 -3.04 -4.1 -2.26 -0.44 -3.88 -6.23 -3.27 0.13 -0.63 -0.14 -1.02 0.45 0.41 1.7 0.45 0.92 1.23 1.26 -0.6 0.74 -0.53 -0.12 0.41 0.68 -0.07 0.17 0.35 0.01 0.56 0.54
-2.16 -0.62 -3.46 -3.2 -1.82 -2.18 -1.0 -1.83 -1.65 -2.53 -0.35 -0.88 1.59 -0.61 0.03 -1.38 2.32 -2.01 -1.18 -1.58 -1.14 -0.54 -0.15 1.23 0.22 0.91 1.19 0.8 0.49 0.35 0.36 0.29 0.14
-3.37 -3.47 -4.19 -3.38 -3.68 -2.87 -0.35 -7.1 -5.38 -3.59 0.23 0.19 0.74 0.03 0.06 0.31 1.77 0.02 -0.46 -0.09 0.11 0.2 0.4 -0.57 1.06 0.83 1.03 -0.0 0.46 0.71 0.45 0.22 0.58
-0.61 -0.49 -1.44 -1.72 -1.74 -1.27 -2.08 -1.37 -1.63 -1.51 0.49 -1.39 -0.2 -1.52 -0.45 -0.28 1.8 0.48 0.3 0.38 0.63 -1.35 -0.63 -2.12 -0.04 0.85 1.08 0.24 0.56 0.82 0.6 0.86 0.62
- - - - - - -3.6 - - - -0.2 -4.17 -0.66 -2.28 0.01 0.49 1.25 0.68 0.35 -1.79 0.55 -2.44 -5.4 -6.54 -0.65 0.4 0.83 1.73 1.68 0.98 1.65 1.7 1.54
- - - - - - - - - 1.7 - - - - - - 4.27 - - - - - 1.61 - - 1.29 - 0.8 0.71 - 0.64 - -
- - - - -0.09 - 1.23 - - - - - 1.77 - - - 1.09 - - - - 1.15 - 3.99 1.28 0.31 - 0.17 - - - - 0.28
- - - -0.68 - - - - - - 1.23 1.02 - 1.03 2.2 - 2.61 - - - 0.96 - 0.9 0.77 - -2.29 - 1.76 - 0.03 -0.06 1.66 0.04
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- - - - - - - - - - - - - - - - 3.83 - - - - - - - - 1.37 -0.97 2.96 - 2.4 - 1.37 -
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.