Heatmap: Cluster_260 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- -8.48 - -8.38 -5.07 - -6.72 -5.72 -9.08 -5.19 2.24 -2.16 -2.93 -0.62 2.4 1.8 -0.16 2.07 2.0 1.98 1.96 -6.13 -5.8 - -0.91 -1.25 -1.3 -5.1 -6.65 -7.08 -8.77 -5.6 -6.04
- - - - - - - -6.57 - - 1.99 -0.46 - -4.72 - 0.66 0.14 2.89 2.81 2.33 2.56 -4.74 - -4.97 - -3.9 -3.22 - - - - - -
-10.02 - - -7.66 -7.9 - -3.38 -7.55 - -5.72 2.25 -4.97 0.33 - 1.32 0.96 -0.84 2.64 2.65 1.5 2.43 -5.28 -5.41 -6.95 -0.02 -7.91 -6.13 -7.78 -7.82 - -7.92 -6.79 -
-4.82 -4.38 -4.17 -8.3 -7.02 - -0.23 - - - 2.31 -0.13 - -2.69 1.44 0.1 -0.28 1.98 2.5 2.11 2.86 -8.5 -6.1 - -8.52 -4.01 -3.19 - - - - - -
- - - - -5.3 - - - - - 2.05 -1.66 -5.06 -1.27 -0.11 0.8 -0.77 2.39 3.25 1.42 2.82 -2.81 -5.09 - -2.61 - -7.19 - - - - - -
-4.15 -4.58 -4.46 -9.71 -6.72 -10.02 0.28 - -10.29 -9.99 2.05 0.48 -2.39 -0.54 -0.63 1.23 -0.6 2.26 2.62 2.3 2.27 -3.31 -6.19 -4.04 -1.39 -2.17 -2.59 - - - - - -
-6.34 -5.72 -5.83 -6.59 -5.77 -6.48 -2.43 -5.15 -4.18 -5.08 2.3 -0.17 0.19 -0.11 -0.39 1.97 0.45 2.38 1.57 1.32 1.77 -1.51 -2.41 -0.4 0.93 -1.02 -1.67 -3.35 -4.25 -4.03 -4.15 -3.13 -2.26
-2.88 -2.84 -2.12 -1.82 -2.26 -1.55 -1.61 -2.24 -2.19 -1.71 2.17 -1.44 -2.28 -0.58 -1.51 0.89 -0.78 2.13 2.3 1.97 2.5 -2.11 -3.79 -1.27 -2.84 -0.84 -1.14 -2.27 -2.09 -2.1 -2.39 -1.94 -2.49
- - - - - - - - -2.78 - 2.8 - - - - -0.94 0.19 1.69 3.21 2.64 1.09 - - - 1.77 - - - - - - - -
- - -11.42 -10.81 -11.33 - - -7.27 - - 2.16 -2.69 -1.67 -3.44 2.44 0.45 -0.88 2.02 2.7 1.61 2.22 -6.51 -6.14 -8.27 -1.78 -2.31 -2.04 -1.72 -1.76 -1.8 -1.85 -1.79 -2.43
- - - - -4.89 - -6.93 - - - 2.47 - -2.04 -5.91 -1.55 0.77 0.01 2.65 2.46 1.81 2.63 - - - -2.35 -1.88 -1.5 -1.73 -1.78 -1.22 -3.35 -1.63 -1.25
- -7.03 -7.93 - - -5.52 -3.95 - - - 2.68 -3.05 0.05 -3.36 -1.15 1.41 0.27 2.69 2.26 1.8 2.03 -2.21 -3.03 - -0.26 -1.45 -1.15 -5.51 -5.48 -6.36 -5.45 -4.76 -5.31
- - - - - - - - - - 1.99 - -6.29 - 0.47 1.68 -1.6 2.94 2.48 1.47 3.01 - - - -4.86 -10.53 -9.64 - - -8.27 -8.49 -6.76 -
- - - -6.99 - - -6.22 - - - 2.14 -2.25 -2.38 - -3.15 0.9 -0.96 2.89 2.35 2.07 2.86 -2.38 - -2.81 -2.67 -2.1 -1.6 -4.09 -3.06 -2.92 -3.33 -2.25 -4.58
- - - - - - -6.13 - - - 2.42 - -1.12 - - 1.66 0.44 2.18 2.91 2.04 2.49 - - -4.23 -0.52 -4.76 -3.61 - - - - - -
-5.57 -6.66 - - - -3.71 -2.32 - - -6.29 2.25 0.06 -0.06 0.74 -3.86 1.66 -0.45 2.55 2.32 1.92 1.75 -1.8 -4.4 -1.2 -0.3 -1.58 -1.58 - - -4.84 -6.08 - -6.84
- -5.73 - - -6.13 - -3.87 - - - 2.73 0.73 -0.78 -0.46 -3.81 1.66 -0.8 2.41 2.12 2.11 2.07 -2.55 - - -0.74 -1.66 -1.99 - - - - - -
-9.57 - - - - - -8.01 -8.13 - -6.79 2.29 0.12 -0.33 -1.15 0.35 1.09 -1.08 2.36 2.44 1.98 2.5 -3.25 -10.57 -7.24 0.29 -3.27 -2.82 -5.9 -8.98 -7.61 -5.71 -4.1 -8.39
- - - - -9.28 - -8.58 -8.41 - -7.6 2.16 -1.89 -7.32 -4.04 -1.96 1.55 -0.36 2.75 2.63 2.51 2.45 -5.95 - -4.57 -4.52 -5.35 -4.91 - - - - - -
-2.5 -2.18 -2.74 -2.43 -2.17 -1.34 -2.04 -1.72 -2.04 -0.8 1.72 -1.36 -0.85 -1.05 1.33 1.58 -0.36 1.98 1.89 1.88 1.94 -2.41 -2.12 -2.92 -0.68 -0.49 -0.42 -2.42 -2.1 -1.84 -2.49 -2.06 -1.57
-3.63 -4.76 -5.48 -1.39 - - - - - - 2.66 -2.38 -0.87 - -2.37 -1.04 0.34 0.88 3.24 1.31 2.93 - - - 0.41 -4.31 -3.13 -1.4 -5.07 -3.95 -3.93 -5.11 -3.33
- - -3.59 -3.48 -2.2 -2.9 -2.71 -2.54 - - 1.99 -2.7 -3.75 - -1.69 2.22 -1.86 3.3 1.53 1.02 0.89 -1.4 0.19 0.58 -2.07 -0.96 -1.51 -0.71 -1.3 -3.69 - -1.7 -0.86
- - - - - -5.22 - -5.23 - -6.19 1.81 -0.52 -5.08 -1.0 -4.75 0.3 -0.26 2.45 2.95 2.42 2.47 -4.33 -5.14 -2.04 -5.3 -1.32 -1.09 -3.68 -2.58 -1.81 -2.97 -4.0 -3.33
-2.73 -5.27 -2.16 -2.46 -1.72 -2.17 -3.51 -2.02 -2.89 -3.16 2.14 -1.33 -0.16 0.06 1.3 1.53 -0.11 2.16 1.49 2.25 1.58 -2.98 -6.58 0.63 -0.35 -1.66 -1.39 -4.96 -6.63 -6.07 -6.64 -6.05 -5.18
- -6.61 -9.09 - -9.22 - -7.45 -3.54 - -0.08 2.11 -1.27 -3.35 -2.24 1.31 2.09 -1.87 2.52 2.09 1.94 2.39 -2.89 -6.22 - -2.92 -2.13 -2.29 -6.85 -5.86 -5.83 -5.65 -5.44 -5.68
- - - - - - -4.84 - - - 2.34 0.21 0.81 0.66 -0.31 1.1 -0.89 2.23 1.97 1.38 2.09 -0.04 - -1.91 1.63 - - -6.52 -5.89 -5.03 - - -4.29
- - -7.21 - - - -5.31 -3.93 - - 2.47 0.29 0.44 1.38 -1.31 0.91 -0.97 2.68 1.68 1.03 2.0 -0.01 - -2.19 1.3 - -9.4 - -7.09 -6.1 - -8.22 -6.41
- - - - - - - -5.14 - - 2.44 - -1.49 - -2.7 2.11 -1.23 2.85 2.77 1.99 2.06 - - - -5.25 -5.64 -5.58 - - - - - -
- - - - -4.34 - - -3.47 - - 3.19 - -0.11 -1.62 - 1.42 -0.07 2.73 2.05 1.54 2.15 - - - -1.58 -3.59 -1.64 - - - - - -
- - - - - - - - - - 2.42 - -0.0 -5.52 -3.38 1.08 0.25 2.45 2.4 2.13 2.46 -5.32 -1.8 - 0.31 -3.93 -2.74 -3.04 -4.94 -1.66 -2.44 -2.93 -4.05
-6.15 - - - - - -2.4 - - - 2.21 - -1.16 - -0.37 0.62 -0.01 2.23 2.38 2.04 2.77 - 1.71 - -2.46 -3.67 -3.67 - - - - - -
- - - - - - - - - -5.12 2.07 - - - -2.02 2.67 -7.93 3.36 2.51 0.9 2.08 - - - -4.65 - - - - - -4.72 -5.72 -
- - - -10.74 - - -10.06 -8.3 - -7.33 2.65 -7.46 -2.09 -5.57 0.49 0.93 -0.43 2.73 2.19 1.89 2.4 -9.97 -3.95 0.53 -2.98 -1.96 -1.65 - - -8.41 - - -
-2.69 -5.14 -1.63 -2.63 -2.11 -3.85 -3.17 -1.72 -2.36 -2.27 1.8 -0.95 -1.82 -0.44 1.43 1.22 -0.92 2.17 1.93 2.14 2.11 -1.13 -4.97 -3.64 -1.38 -0.48 -0.39 -1.99 -2.96 -2.68 -2.15 -2.03 -2.37
- - - - - - - - - - 2.32 - -0.69 - - 2.23 0.34 2.59 2.66 1.95 2.32 - - - -3.26 -6.56 -4.01 - - - - - -
- - - - - - - -1.69 - - 2.87 - - - -1.84 - -0.81 2.12 3.08 -0.94 3.39 -2.94 - - - -5.34 -3.58 - - - - -1.77 -2.74
- - - - - - -7.07 - - - 2.8 - -2.39 - -2.37 2.0 -1.82 2.65 2.29 2.2 2.29 - -6.17 - -2.98 -1.62 -2.0 - - - - - -
-9.29 -10.74 -11.5 - -10.07 - -9.99 -9.2 -9.58 - 2.6 -8.94 -0.67 -6.77 -3.04 0.29 -0.26 2.94 2.59 1.95 2.42 -9.87 -6.36 - -0.83 -2.73 -2.47 -4.95 -4.85 -4.65 -4.32 -4.15 -4.5
- -9.46 - - - - - - - - 2.49 - -0.39 - -0.54 1.01 0.16 2.25 2.45 1.82 2.41 -7.59 -4.32 -4.33 -0.67 -1.48 -1.31 -1.76 -1.53 -1.28 -1.95 -1.51 -0.87
- - - - - - - - - - 2.64 -1.98 -1.82 - 0.93 0.34 -0.33 3.16 2.56 1.49 2.09 - -2.09 -4.44 -2.93 - -7.69 - - - - - -
- -8.75 - - -9.27 -6.96 - - - -5.46 2.39 -0.82 -3.66 -0.46 0.52 1.17 -0.88 2.66 2.65 1.26 2.52 -1.86 -3.94 -3.27 -3.39 -4.31 -4.8 -4.13 -2.69 -2.98 -3.4 -3.51 -1.96
- - - - - - - - - - 2.55 - -0.91 -3.98 -0.1 1.71 0.19 2.31 2.29 1.51 2.17 -6.5 -4.1 -1.49 -0.0 -1.71 -1.76 -0.74 -2.44 -2.79 -0.96 -1.48 -2.35
- - - - - - -6.8 - - - 2.23 - -1.09 - -2.41 2.54 -0.8 2.14 2.43 1.98 2.25 -5.18 -0.98 - -1.6 -0.28 -0.47 -2.94 -6.8 - -4.22 -4.04 -3.53
-3.46 -6.8 -3.44 -5.64 -7.72 - -3.65 - -6.28 - 2.4 -5.09 -3.23 -4.67 -0.53 1.51 -0.34 2.52 2.28 2.0 2.31 -3.77 -6.79 -3.84 -3.83 -0.99 -0.95 -2.8 -1.43 -1.0 -2.26 -1.71 -0.8
- - - - -7.22 - -3.61 - - - 1.46 -0.89 -3.62 -4.88 - 0.98 0.09 2.43 2.9 2.59 2.67 -3.29 -4.01 -1.33 - -1.96 -1.9 - -4.81 -5.01 -6.1 -4.98 -5.86
- - - - - - -7.2 -6.95 - - 2.79 - -0.63 - -5.18 1.63 0.17 2.55 2.61 1.53 2.29 -5.16 -4.57 -5.43 0.25 -4.49 -3.42 - -7.2 - - - -7.17
- - - - - - - - - - 2.57 -6.85 0.75 -4.97 0.61 1.94 -0.91 2.5 2.09 2.15 2.05 -7.78 - -2.45 -0.45 - - - - - - - -
- -11.07 -13.97 - - - -7.84 -10.26 - -12.67 2.2 -6.25 -1.47 -6.18 0.73 1.26 -1.86 2.93 2.25 2.17 2.56 -7.92 -6.69 -5.78 -2.78 -1.8 -2.03 -3.87 -6.73 -8.86 -4.31 -4.69 -9.97
- - - - -3.57 - - - -4.03 - 2.75 - -2.78 - - -4.11 -0.76 3.32 2.76 0.72 2.7 - - - -1.66 -7.23 -3.26 - - - - - -
- - - - - - - - - - 2.62 - -0.24 - - 1.11 0.59 2.49 2.92 1.36 2.43 - -3.17 - -0.04 -4.15 -3.67 - - - - - -
- - - - - - - - - - 3.13 -3.34 -0.76 - -2.05 -0.55 -0.08 2.5 3.01 1.08 2.32 -1.24 - - -1.64 -8.39 -5.07 - -4.48 - - -5.06 -6.04
- - - - - - -4.65 - -8.0 -7.7 2.34 -2.39 -1.99 -3.79 1.59 1.43 -0.54 1.4 2.94 1.65 2.37 -0.49 -4.4 -4.26 -1.33 -3.31 -3.49 -1.31 -4.64 -6.14 -2.24 -2.45 -2.82
-8.78 -8.21 -8.96 -12.79 -9.75 - -1.97 - -10.77 -9.38 2.72 -3.55 -0.53 -2.49 0.04 1.38 0.17 2.58 1.83 2.26 2.07 -5.82 -3.99 -1.34 -0.84 -1.62 -1.21 -7.63 -7.18 -6.73 -8.21 -7.46 -5.21
- - - - - - - -5.96 - - 2.66 - -1.83 - - 1.17 0.88 2.4 2.82 2.03 2.14 - -3.73 - 0.0 -3.18 -1.82 - - - - - -5.16
- - - - - - -8.18 - - - 2.67 -5.68 0.09 -7.02 -3.15 -0.06 0.31 2.13 2.86 1.5 2.68 -8.71 -4.82 -6.66 1.03 -3.33 -2.64 - - - -12.12 - -
- -5.7 - -4.09 -4.56 -2.47 - - - - 2.17 - -0.39 - -1.31 0.41 -0.64 2.54 2.92 0.53 2.61 -0.36 - 0.02 0.39 -3.95 -2.62 -5.21 -2.03 -3.43 - -3.34 -1.65
-7.45 -5.37 -6.37 -7.48 -4.82 -4.25 -0.67 -10.02 -9.99 - 2.2 0.49 -4.97 0.14 -1.3 1.72 -0.52 2.51 2.5 2.04 2.13 -3.35 -5.7 -4.21 -2.52 -1.97 -1.8 - - - - - -
-2.1 -3.96 -0.97 -1.45 -1.42 -3.67 -2.41 -3.21 -4.37 -4.18 2.47 -3.92 -2.05 -4.82 -1.05 1.32 0.07 2.49 2.39 1.67 2.2 -4.54 -4.24 -4.26 -1.97 -1.27 -1.18 -2.26 -2.02 -2.17 -2.52 -2.86 -2.6
- - - - - - -8.43 - - - 2.79 -5.49 -0.08 -7.41 -2.75 1.38 -0.27 2.85 2.49 1.74 2.31 -8.5 - - -1.36 -8.03 -6.62 - - - - - -
- -5.68 - - - - - - - - 2.48 -2.18 -0.8 -1.15 0.64 0.98 -1.25 2.91 2.16 1.6 2.11 -5.81 - - -0.77 -5.8 -6.17 -0.68 -3.49 -3.58 -1.36 -0.38 -1.79
- - - - - - -6.21 - - - 2.43 -5.19 -0.73 -6.19 -3.45 2.57 -0.61 2.42 2.26 1.92 1.98 -5.64 -1.37 -6.44 -0.91 -0.39 -0.83 -5.34 -8.61 -8.77 -7.28 -3.59 -8.76
-7.88 -6.5 -7.23 -9.06 -8.13 -7.85 -0.8 -11.62 -10.33 -11.98 2.22 -1.61 -1.72 -2.0 -1.02 1.74 -0.25 2.17 2.43 2.52 2.32 -6.37 -9.12 -8.61 -2.76 -0.5 -0.56 - - - - - -
-5.03 - - - - - - - - - 2.02 -0.35 -0.55 -1.87 1.61 1.54 -1.41 2.05 2.11 1.69 2.7 -1.3 -2.27 -1.81 0.23 -2.54 -2.11 - -3.99 - -5.24 - -3.34
-1.55 -0.98 -2.95 -2.74 -3.1 -1.92 -2.01 -2.17 -2.45 -0.5 1.88 -1.18 -0.73 -1.58 1.24 1.58 -0.11 1.85 1.92 1.69 2.0 -2.52 -1.7 -2.62 -0.69 -0.82 -0.58 -2.28 -2.12 -1.77 -1.95 -1.71 -1.39
- - - - - - - -9.22 - - 2.45 -4.2 1.09 -3.97 -0.04 2.06 -0.63 2.43 1.85 1.97 1.91 -5.35 -1.8 -5.62 1.29 -6.8 -5.22 -9.68 -8.29 -9.37 - - -8.31
- - - - - - -1.61 - - - 1.21 -0.07 -1.43 - - -0.29 0.28 2.96 3.07 2.42 1.95 -4.53 - -0.31 -1.81 -2.95 -1.86 - -4.45 -4.55 - - -4.33
- - - - - - -8.77 - - - 2.46 -5.43 0.41 - -0.28 -0.24 0.22 2.32 2.73 1.69 2.71 -7.1 -6.29 -2.95 0.07 -1.9 -1.21 - - - -8.97 - -
- - - - - - - - - - 2.98 - - - - 2.99 - 3.15 3.05 - - - - - - - - - - - - - -
- - - - - - - - - - 2.52 -6.01 -0.99 -5.56 -0.6 1.38 0.15 2.61 2.15 2.42 2.25 -10.18 -3.92 -8.02 -0.23 -1.56 -1.17 - - - - - -
- - - - - - - - - - 2.05 - -1.25 - -1.82 -0.23 -0.43 1.77 3.06 2.41 2.6 - -2.43 - 1.17 -4.59 -6.27 -2.31 -3.2 -2.88 -4.2 -2.78 -1.64
- - - - - - -6.04 -9.25 - - 2.64 -5.75 -1.09 -0.84 -2.49 0.92 -0.21 2.56 2.66 1.06 2.5 -1.83 -4.44 - -1.46 -4.27 -3.74 -1.89 -1.13 -1.24 -2.62 -3.2 -0.84
- - - - - - - - - - 2.68 - 1.1 - - 1.7 0.17 2.8 2.42 0.97 2.13 - -2.19 - 0.13 -4.72 -3.94 - - - - - -
-5.9 -5.75 - - - - -4.87 - - - 1.93 -0.13 -0.29 -0.57 1.64 1.34 -1.37 2.1 2.12 2.11 2.22 -0.94 -2.55 -3.61 -0.02 -1.85 -0.98 -4.48 -3.6 -3.31 -4.68 -5.25 -2.25
- - - - -7.6 - -5.35 - - - 1.79 -2.72 -1.72 -0.9 2.31 1.97 -1.04 1.61 2.25 1.61 1.86 -0.59 - -1.96 -3.67 -3.09 -3.35 -0.67 -0.94 -1.97 -0.36 -0.43 -0.89
- - - - - - - - - - 2.49 - 1.04 - -2.77 0.05 -0.39 3.28 2.33 1.97 2.0 -3.7 - -4.02 -1.41 -7.09 -2.57 - - - - - -
- - - - - - - - - - 1.95 -1.36 -0.62 - -2.35 2.32 -2.58 2.25 1.94 1.73 2.5 -1.75 - - -0.73 -2.75 -2.39 0.51 -1.72 - 0.63 -0.76 -3.33
- - - - - - - - -9.35 - 2.88 -5.62 -0.55 -3.88 -4.57 1.04 -0.28 2.92 2.47 1.87 2.25 -6.16 - - -1.28 -6.59 -6.61 - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.