Heatmap: Cluster_448 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- -8.38 -8.71 - - - -5.64 - - - 1.09 -1.73 -0.94 -3.26 0.77 1.77 -0.62 2.3 2.74 1.49 2.24 -2.27 -4.38 -5.84 -0.12 -1.24 -0.44 -1.62 -1.4 -0.64 -1.3 -1.34 -0.98
- - - - -7.35 - - - -6.76 -5.15 -0.11 -0.51 -4.83 1.63 -0.81 1.76 -2.04 1.93 2.72 2.31 2.83 -0.1 -3.46 -1.46 -3.98 -9.01 -6.1 - - -8.29 - -6.05 -8.32
-7.82 - - - -8.4 - -4.39 - -9.74 -5.25 1.95 -1.33 0.38 -1.23 0.38 2.78 -1.02 2.13 2.03 2.07 1.72 -3.36 -2.45 -5.26 0.37 -3.46 -3.36 -2.66 -4.61 -4.39 -4.3 -2.88 -4.4
- - - - - - -6.22 - -6.21 - 1.41 -0.96 -0.89 0.66 1.23 2.95 -1.36 2.09 1.81 2.04 1.69 -1.43 -5.32 - -0.84 -1.01 -1.06 -4.66 -6.22 -6.2 -4.32 -4.29 -
- -7.81 -5.71 -4.84 -3.96 -4.06 -6.95 - - - 2.03 -0.63 -1.14 - 0.34 2.32 -1.55 2.39 2.36 1.98 2.3 -3.08 -2.69 - 0.0 -3.92 -3.2 -4.86 -6.73 -2.77 -4.66 -5.23 -4.5
- - - - - - -8.52 - - - 1.13 -1.15 -4.14 -0.9 -0.12 1.22 -3.75 2.66 2.54 2.69 2.96 -3.94 - - -4.53 -8.58 -8.59 - - - - -8.57 -
- - - - -8.44 - - - - - 1.93 -0.55 -1.65 - 0.75 2.62 -1.45 2.19 2.4 1.9 2.46 -2.89 -3.22 -4.94 -1.33 -7.85 -4.46 - - -3.43 - -5.25 -4.63
- - - - -10.2 - - - - - 1.66 -6.99 -0.59 - 0.82 2.65 -1.23 2.33 2.48 1.89 2.43 - - - -0.19 -4.32 -3.74 - - - - - -
- - - - - - - -5.19 - - 2.02 - -0.67 - 0.52 2.65 -0.55 2.69 2.17 1.96 2.09 - -3.46 - -0.98 -4.06 -2.59 - - - - - -
- - - - - - - - - - 1.09 -1.69 -1.65 - 2.17 2.75 -2.18 2.64 2.19 1.65 2.1 -3.67 - - -2.29 -4.17 -4.06 -7.31 -5.45 - -6.39 -5.27 -3.52
- - - - - - -3.94 -7.66 - -5.91 1.72 -1.09 -0.51 -0.21 0.77 2.5 -0.09 1.86 2.38 2.13 1.97 -3.77 -3.93 - 0.34 -2.31 -1.44 -4.88 - - -3.78 -4.12 -6.17
-6.61 - -5.79 -5.11 -5.21 -5.05 -1.69 -6.76 -5.32 -7.52 0.41 -3.1 -2.88 -2.0 -1.44 0.69 -1.04 2.88 2.82 1.56 2.76 -1.74 -2.03 -0.95 -3.28 -0.67 -1.02 -2.07 -1.91 -1.28 -2.15 -1.67 -1.64
- - - - - - - - -6.97 - 0.32 -3.86 -4.65 0.0 -0.02 1.61 -2.51 2.05 2.99 2.43 3.08 -2.03 - -2.46 -4.57 - - - - - - - -
-7.74 - - - - - -3.82 -6.52 -6.6 -8.1 1.88 -1.09 0.42 -1.33 0.54 2.77 -1.05 2.15 2.01 2.13 1.82 -3.05 -1.93 -3.92 -0.22 -3.68 -3.97 -2.58 -4.58 -5.4 -4.65 -2.85 -4.45
-6.4 -8.71 - -6.06 - - -5.94 - -7.1 - 1.3 -2.83 -1.65 -3.45 1.41 2.61 -1.2 1.75 2.22 2.09 2.22 -1.9 -4.03 -1.84 -1.35 -0.64 -0.64 -2.1 -2.02 -1.9 -1.72 -2.16 -2.1
- - - - -7.2 -6.22 -8.62 - -8.6 -5.37 2.13 -6.02 -1.25 -7.59 0.11 2.87 -1.36 2.17 2.31 2.28 1.95 -5.41 -2.91 - -1.1 -1.8 -2.26 - - - -6.72 - -
- - - - - - -8.68 - - - 1.59 -4.34 -0.04 -6.07 0.95 2.87 -1.62 2.4 2.44 1.27 2.37 -6.09 -3.92 - 0.05 -10.69 -7.42 -9.98 - - - - -
- - - - -7.04 -3.99 - - -6.84 - 1.29 -3.52 -1.89 - 1.04 2.8 -1.99 3.11 2.15 1.11 2.27 -5.77 -5.95 - -4.21 -3.43 -3.06 -3.53 -4.07 -5.79 -3.59 -2.59 -5.17
- - - - - - - - - - 1.21 -0.73 -2.8 1.34 0.94 1.25 -0.31 3.21 2.16 1.6 2.3 - - - -0.68 - - - - - - - -
- - - - - - -9.16 - -10.07 - 2.15 -6.34 - -5.97 1.43 2.39 -1.2 2.62 2.37 1.91 2.34 -10.08 - - - -10.9 - - - - - - -
- - - - - -6.97 - - - - 1.9 - -3.53 - 1.42 2.67 -1.35 2.18 2.31 2.36 2.31 -7.93 - - -2.8 -7.35 -6.24 - - - -7.93 - -
-4.43 -5.52 - - - - -0.44 - - - 1.97 -3.72 -1.99 - - 1.33 -2.27 3.32 2.32 1.55 2.6 - -3.84 -2.38 -0.87 -2.27 -3.11 -4.65 - - - -4.54 -4.7
- - - - -5.68 - - - - - 1.41 -2.52 -0.69 - 0.49 3.07 -3.19 2.95 2.13 0.92 1.75 - - - 0.23 -3.68 -2.8 -3.59 -2.48 -1.57 - - -2.14
- - - - - - - - - - 0.13 -2.41 -1.27 -1.99 - 3.15 -2.02 2.88 1.71 2.2 2.23 -1.38 - - 0.74 - - - - - - - -
-4.35 -3.4 -4.82 -5.98 -5.42 -5.91 -5.74 -5.52 -4.41 -4.23 -0.04 -0.29 -1.62 -3.71 -0.56 1.33 -2.2 2.23 2.39 2.18 2.3 -2.0 -5.51 -7.96 -0.88 -1.0 -0.88 -0.29 -0.09 -0.16 0.26 -0.09 -0.03
- -7.42 - - - -6.92 - -7.64 - - 0.27 -2.21 -3.23 -6.79 -0.28 1.5 -3.14 2.41 3.18 2.43 2.53 -4.14 - - -2.67 -3.65 -3.16 -1.84 -2.47 -2.4 -1.26 -1.37 -1.96
- -6.08 - - - - - -4.1 -6.61 -2.77 1.34 -0.75 -0.2 -3.62 1.52 2.78 -0.59 1.75 2.24 1.87 2.21 -3.23 -2.52 - -0.17 -1.68 -1.32 - -7.04 -6.2 - -7.02 -6.11
- -5.64 - - - - - - -8.72 - 1.76 -4.72 -2.68 -6.71 0.62 2.24 -1.14 2.15 2.78 2.21 2.64 -7.06 -5.02 - -1.58 -7.81 -8.29 -5.57 - -8.83 -5.59 -4.78 -8.68
-12.42 - -9.49 - -12.6 -9.93 -4.31 -9.2 - - 1.83 -4.33 -6.32 0.2 -0.97 0.95 -6.14 2.93 2.52 2.02 2.63 -1.0 - -6.96 -5.79 -5.75 -6.13 -2.1 -1.47 -1.87 -2.73 -3.08 -1.12
- - - - - - - - - - 1.61 - -4.74 - 1.35 2.82 -2.08 2.29 2.35 2.05 2.57 - - - -5.14 -7.83 - - - - - - -
- - - - - - - - - - 1.47 -1.09 -1.07 -1.08 2.28 1.49 -0.09 2.69 2.08 1.64 2.22 -1.91 -5.56 -1.33 -0.17 -4.51 -3.79 - - - - -6.59 -
- - - -5.28 -4.18 -2.36 - -4.33 -3.2 -1.27 2.25 -2.35 -2.27 -0.92 0.45 1.62 -0.5 2.93 2.18 0.47 2.4 - -5.66 -4.2 -0.47 -1.54 -1.69 -2.42 -4.46 -6.66 -2.96 -3.54 -0.76
-1.88 -3.52 -4.98 - - - 1.17 - - - 1.61 -2.19 - 0.11 - -0.23 -2.4 3.37 2.74 0.86 2.17 - - - -3.31 0.1 -1.18 - - - - - -
-4.07 -4.03 -3.93 -2.67 -3.16 -4.74 -2.99 -2.6 -5.28 -4.67 1.56 -0.92 -0.66 0.33 -0.26 1.24 -0.06 2.79 2.25 1.61 2.22 -1.04 -1.32 -2.75 0.3 -3.48 -3.22 -2.3 -3.66 -3.55 -3.65 -2.43 -2.39
-6.97 -5.56 -6.86 -6.41 -5.94 -7.15 -4.21 -5.56 -7.35 -7.18 1.13 -1.79 -0.35 0.35 0.43 1.46 -0.86 2.72 2.64 1.75 2.41 -1.57 -2.8 -2.32 -0.23 -3.45 -3.27 -3.78 -3.85 -4.69 -4.28 -3.88 -2.79
- -1.09 - - -3.85 - -0.14 - - - 0.1 2.2 - 1.01 - 3.0 -4.66 2.97 1.7 0.38 1.75 -4.71 - - - -5.87 -6.94 - - - - - -
-3.58 -4.16 -2.98 -4.48 -4.4 -6.34 -4.82 -3.21 -3.77 -5.51 1.82 -0.69 -0.29 -0.07 -0.88 1.66 0.21 2.13 2.48 1.75 2.49 -1.04 -2.13 -1.31 0.56 -5.8 -4.35 - - -8.94 - - -9.89
- - - -6.56 -5.39 -2.12 -7.13 -3.63 -4.67 -1.64 1.93 -1.35 -2.29 0.13 0.13 1.93 -0.24 2.55 2.55 0.29 2.49 -4.87 -6.2 -6.33 -1.17 -1.49 -1.56 -2.61 -5.43 -6.12 -2.26 -3.08 -0.36
- - - - - - - - - - 1.65 -5.45 -2.38 - -0.01 2.67 -0.95 2.46 2.44 2.39 2.36 - - - -2.71 -3.93 -3.12 -4.72 - - -3.99 -4.28 -7.43
- - - - - - -7.83 - - - 1.88 -6.82 - -1.88 0.01 1.58 -6.29 2.58 2.35 2.72 2.88 - - - - -4.98 -6.93 -7.74 - - - - -
- - - - - - - - - - 1.51 - -1.27 - - 3.1 -1.22 3.26 1.01 1.6 2.26 - - - -0.15 - - - - - - - -1.16
- - - - -9.08 - -5.14 - - - 2.1 2.33 -5.38 0.87 -3.13 0.2 -2.06 2.2 2.63 2.19 2.19 -5.01 -5.1 -3.79 -6.16 -2.8 -3.05 - - - - - -
- -5.89 -8.73 -8.78 -11.05 -7.96 -9.77 -8.56 -8.76 -7.79 1.82 -4.3 -5.58 -2.58 1.98 1.77 -3.37 2.54 2.87 1.69 2.41 -8.77 - - -4.91 -6.26 -6.05 - - - -8.78 - -
- - - - - - - - - - 0.58 -4.03 0.07 -4.55 1.16 2.99 -1.64 1.77 2.68 1.8 2.45 -6.66 -4.67 - 0.04 -9.77 -10.0 - - - - - -
- - - - - - -3.01 - - - - - -0.71 - - 3.4 -2.63 3.35 1.83 1.12 2.15 -1.89 -1.07 - - - - - -2.97 - - - -1.85
-7.53 - -8.33 - - - -5.52 -5.65 - - 2.6 -2.81 -0.45 -4.48 -0.47 1.5 -0.9 1.96 2.17 1.62 1.82 -3.15 -2.92 - 0.06 -2.2 -1.44 -0.61 0.5 -0.52 -1.15 -1.45 0.51
- -4.96 - - -2.52 - - -4.01 - - 3.09 -0.84 -4.24 - -3.16 0.45 -1.44 3.0 2.37 1.7 1.99 - -3.28 - -3.12 - -6.4 -2.65 -4.18 -2.15 - -2.14 -1.09
- - - - - - - - - - 1.99 -7.23 -5.49 - 0.05 2.98 -1.37 2.34 2.32 2.12 2.21 -8.15 -6.12 - -4.96 -6.87 -5.68 -2.96 -4.09 -4.64 -2.94 -2.47 -5.66
- - - - - - - - - - 1.76 - -1.22 - -2.11 2.59 -5.05 2.18 2.49 2.81 2.48 - - - -2.85 - -7.49 - - - - - -
- - - - - - - - - - 1.48 -5.96 -0.03 - 1.26 2.88 -1.62 2.35 2.43 1.3 2.34 -8.27 -6.07 - 0.13 -10.22 -9.4 - - - - - -
- - - - - - - -3.51 - - -0.23 - - - -0.07 1.86 -4.94 2.87 3.4 2.09 2.36 - - - - -7.59 -7.57 - -4.21 - -3.19 - -
- - - -9.82 -7.48 -8.24 - -4.18 -8.44 - 2.1 -5.04 -3.09 -5.03 0.67 2.8 -1.02 2.13 2.28 2.33 2.24 -6.65 -5.83 - -3.75 -3.93 -4.52 -5.07 -5.2 -6.39 -6.93 -5.54 -3.25
- -8.34 - - - - -7.56 - - - 2.28 -2.04 -3.28 -3.13 1.21 2.16 -0.92 2.24 2.24 2.13 2.52 -4.54 -6.66 -5.02 -1.55 -2.33 -2.74 - - -6.52 -5.79 - -5.83
-7.66 - -4.55 -5.32 -4.17 -6.08 -4.88 - - - 1.66 -0.59 -1.06 -3.7 0.55 2.5 -0.94 2.52 2.3 1.75 2.48 -2.42 -3.82 -3.81 -0.58 -5.82 -4.68 -6.6 -6.07 -4.63 -5.69 -5.36 -5.1
- -8.97 -7.11 - -7.89 - -4.52 - - - 1.34 -0.04 -1.88 -1.78 1.11 2.13 -1.56 1.94 2.53 1.83 1.9 -2.15 -3.71 -5.84 -0.5 -0.52 -0.29 -1.51 -1.6 -1.23 -1.69 -1.28 -0.44
-5.37 -7.66 -6.58 -4.4 -4.5 -3.09 -7.46 -4.54 -6.45 -6.29 1.61 -1.93 -2.29 -0.7 -0.69 1.83 -0.33 2.59 2.3 2.45 2.33 -3.61 -1.04 -2.53 -0.47 -1.75 -1.75 -7.76 -6.51 -6.44 -7.66 - -4.82
-1.14 -2.07 -2.67 -2.6 -3.62 -4.01 -2.14 -4.57 - - 2.71 -2.22 -1.8 -2.22 0.11 1.9 -0.57 2.53 1.85 1.4 1.05 -2.46 -2.75 -5.06 -0.64 -3.16 -2.17 -1.0 -0.2 -0.54 -0.82 -1.98 -0.93
-4.02 -5.05 -6.35 -7.14 -7.74 -5.57 -5.1 - - -8.06 1.38 -1.68 -0.61 0.24 0.82 1.52 -2.54 2.77 2.72 1.64 2.53 -1.76 - -3.4 -1.23 -4.15 -4.62 - -7.46 - - - -
- - - -6.96 -6.5 -4.83 -6.72 -5.25 -7.67 -2.46 2.01 -1.68 -1.71 0.18 0.16 2.74 -0.79 2.64 2.23 0.21 2.27 -4.79 -4.29 -4.26 -1.7 -2.19 -2.25 -3.12 -7.1 -6.71 -3.66 -3.15 -1.08
- - - - - - -2.86 - - - -0.4 - - - -1.8 1.69 -3.04 3.31 2.03 3.0 2.52 -3.99 - -3.14 - -1.3 -2.74 - - - - - -
- -5.89 - - -6.39 - -1.46 - - - 1.1 -2.0 -4.15 0.2 0.69 1.48 -4.28 2.85 2.0 2.22 3.02 -1.21 - - - -7.38 -7.39 - - - -3.95 -5.24 -4.98
- - - - -7.07 - -7.6 - - -5.1 1.19 -1.83 -1.16 -5.32 1.23 2.92 -2.11 2.68 1.79 1.35 1.78 -3.86 -3.16 - -0.75 -3.18 -2.6 -1.02 -2.14 -2.14 0.24 -0.65 -2.74
- -8.91 - -10.06 -10.2 -9.16 -0.35 -7.1 - - 2.12 1.46 -4.08 0.64 -1.33 1.39 -3.28 2.56 2.46 1.99 2.01 -2.43 -3.44 -6.88 -2.33 -2.43 -1.68 - - - - - -
-3.38 - - - - - 0.89 - - - -0.53 -1.65 - 0.58 0.58 1.85 -2.53 3.03 2.3 1.32 2.38 - -0.54 0.33 - -1.53 -2.54 - - - - - -
- - - - - - -6.0 - - - -1.23 - - -3.42 -0.55 2.08 -3.43 3.04 2.67 2.79 2.55 -7.98 -8.01 -3.74 - -9.53 - - - - - - -
- - - - - - - - - - 1.43 - -1.39 -4.02 0.58 2.66 -1.1 2.47 2.16 2.19 2.03 -4.48 -3.56 - -0.53 -2.74 -2.03 -1.7 -1.62 -3.24 -0.67 -2.14 -3.67
-8.47 - - - - - -7.78 - - - 2.01 -5.77 -3.17 -2.17 0.24 2.73 -1.42 2.65 2.1 1.93 2.32 -6.7 -6.3 -7.01 -3.48 -5.21 -4.42 -2.77 -3.69 -3.15 -1.78 -2.22 -4.32
- - - - - - -4.65 - - - -0.59 - - -1.24 0.24 1.16 -4.78 3.34 2.63 2.79 2.35 - - -4.89 - -6.91 - - - - - - -
- - - - -5.06 - -4.7 - - - 2.73 -3.69 -3.02 -3.68 -1.94 1.45 -0.41 3.17 2.1 2.03 1.8 -1.14 -1.58 - - -2.34 -2.96 -4.76 -4.7 -2.93 -3.68 - -4.67
-3.06 -2.08 -3.25 -2.07 -1.91 -2.03 -1.72 -1.79 -2.51 -1.38 1.3 -0.56 -0.63 -0.95 -0.23 2.54 -1.2 1.99 1.78 1.04 1.8 -1.94 -2.36 - 0.33 -0.93 -0.64 -0.8 -0.95 -0.7 -0.78 -1.05 -0.62
- - - - - - -5.43 - - - -1.64 - - -1.54 -2.35 2.13 -2.44 2.89 3.06 2.56 2.54 - - -3.67 - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.