Heatmap: Cluster_342 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-1.03 0.31 -4.01 - - - 0.7 - -3.39 - -0.43 2.37 0.42 0.54 -2.46 -0.96 1.79 0.08 0.68 -0.38 -1.52 0.44 0.01 -0.71 1.04 -0.23 0.25 -0.46 0.18 0.16 -0.39 -0.33 0.34
-5.98 -5.12 -6.47 -7.49 -7.21 -5.03 -0.62 - -4.31 - 0.47 0.52 0.67 0.35 -0.44 0.84 1.53 1.1 0.46 1.15 -0.16 -0.2 1.3 -2.83 0.75 0.67 1.1 -2.43 -0.11 0.65 -1.83 -1.53 1.18
-6.35 -6.53 - -8.34 -8.02 - 0.26 -5.49 -7.05 - -0.9 1.55 1.46 0.28 -2.39 -0.5 1.41 -2.57 -1.97 -1.83 -1.28 0.73 1.81 -1.99 0.96 -0.0 0.27 -1.49 0.39 1.21 -1.84 -0.8 2.4
-3.06 -1.3 -4.18 -6.64 -6.25 - -4.67 - - - -0.96 - -2.54 -2.61 -3.12 - 2.66 -0.73 -1.21 -1.71 -2.41 -2.52 2.84 -5.19 -4.9 1.47 1.44 0.59 0.87 1.15 0.86 0.82 0.64
-3.06 -2.2 -2.59 -1.36 -1.74 -0.99 -0.81 -0.11 -0.46 -1.12 1.73 0.95 0.21 1.39 -1.68 -0.12 1.85 0.85 0.53 1.03 0.03 -0.51 0.2 -1.93 -0.06 -0.8 -0.44 -2.47 -1.01 0.67 -1.73 -0.81 -0.13
-1.65 -2.03 -1.73 -1.65 -1.96 -2.07 0.8 -3.54 -4.1 -2.65 0.78 0.4 0.81 0.58 -0.76 0.86 1.32 -0.02 0.44 0.49 0.39 0.95 0.9 -0.22 0.18 -0.2 0.17 -0.7 -0.24 0.09 -0.33 -0.27 0.14
- - - - - - - - - - - - - - - - 4.44 - - - - - - - - 2.47 2.5 - - -4.13 -5.85 -5.91 -
- - - - -3.92 - - -4.04 - - -4.15 - 0.65 - -3.19 - 3.54 - - - - -4.29 -0.5 0.26 1.66 1.79 2.3 0.29 0.47 0.62 -0.64 0.26 -4.16
- - - - - - - - - - - - - - - - 3.72 - - - - - 4.06 1.61 - - - - - - - - -
-3.11 -2.69 -8.72 -7.76 - - -1.04 -7.0 -6.52 - -5.67 -0.88 1.9 0.13 - - 2.57 - - - - 1.8 -1.96 1.34 -2.63 1.76 1.8 -2.05 0.13 0.38 -2.25 -2.93 2.21
- -4.33 -6.8 -5.57 -8.07 -6.11 -0.24 - -7.31 - 1.53 0.86 0.29 0.5 -2.31 0.47 1.83 0.47 0.41 0.47 0.28 0.22 0.72 -1.7 1.16 1.06 1.04 -1.53 -1.1 0.56 -1.19 -0.32 0.28
-2.64 -1.38 -2.43 -3.13 -2.91 -3.06 0.36 - -3.34 -4.03 -1.4 1.82 0.81 0.24 -1.93 -2.02 1.98 - -2.96 -3.03 -2.99 1.74 1.7 - 1.28 0.55 1.01 -4.25 -1.57 1.14 -3.8 -4.09 1.84
- - -6.64 -7.13 -3.73 -2.73 -2.39 -3.41 -0.09 -5.62 - -2.2 -0.88 -1.51 - -3.02 2.99 - - - -4.58 -1.73 0.01 0.59 -0.16 1.86 1.1 -0.46 0.15 0.45 1.89 1.87 1.16
-2.52 -0.71 -3.21 -2.2 - - -0.86 -1.72 - - 0.31 -0.55 -1.62 - -3.13 -1.41 2.84 - -3.16 -1.91 - 0.04 1.75 - 0.43 0.98 1.45 -1.81 0.78 2.03 -0.09 -0.46 1.35
- - -4.87 -4.29 -7.07 - - -6.2 - -5.78 -0.53 2.05 0.77 3.02 -2.02 -3.11 1.79 -1.47 -1.21 -0.31 -0.95 0.32 1.89 -2.6 -0.27 1.65 1.68 - - - - - -
- - - - - - - - - - 2.6 - 1.33 - - 0.44 2.72 2.59 1.46 1.4 1.43 - -3.84 -2.39 0.71 -5.99 -0.98 - - - - - -
-2.93 -1.82 -3.07 -5.28 - - -1.19 - -4.1 - 0.69 1.08 1.04 0.85 -0.25 0.42 2.32 -1.88 -0.53 -1.24 -0.21 1.09 1.45 -3.21 1.08 1.88 1.89 - -5.08 -2.73 -5.05 -2.35 -3.93
-1.43 -0.16 -2.52 -3.06 -3.8 -4.14 0.36 -4.27 -3.37 -4.57 -2.43 0.52 1.0 -0.1 -3.49 -3.84 2.14 -3.69 -3.7 -3.94 -4.14 -0.42 2.05 1.38 1.72 0.74 1.35 -0.24 -0.27 0.25 -0.74 -0.44 0.31
-1.16 -1.09 -1.8 -2.52 -3.51 -3.2 -0.01 -2.35 -2.59 -2.82 -0.19 1.81 0.2 -1.59 -0.96 0.86 1.73 -1.84 -0.5 -0.39 -1.19 2.25 0.07 0.75 0.43 0.46 0.78 -0.96 -0.98 -0.12 -0.71 -0.44 -0.02
-1.55 -0.72 -2.43 -3.24 -3.71 -3.28 0.55 -3.07 -3.25 -2.24 -0.4 1.41 1.54 0.88 -1.05 -0.68 1.49 -1.05 -2.12 -2.11 -1.55 0.43 1.09 -1.58 0.97 0.15 0.41 -1.81 0.0 1.08 -2.17 -1.19 2.01
- -4.79 -4.36 -4.87 -3.49 -5.7 -2.37 -5.26 - -2.53 -3.46 -3.32 -0.94 - -1.63 -4.25 1.95 -1.09 -2.93 -3.26 -1.85 -2.6 3.09 1.58 0.14 1.71 1.78 0.39 -0.55 -0.18 1.03 0.18 -0.1
-5.11 -2.51 -8.44 - - - -2.21 - - - -3.61 -4.32 2.37 0.08 -5.53 -2.4 2.72 -0.72 -1.42 -1.63 -1.89 -0.03 -3.78 -6.37 -2.27 2.45 2.36 0.18 -1.79 -1.2 0.72 -0.12 0.64
-3.12 -2.25 -5.8 -6.3 -7.54 -6.43 -0.81 -7.73 -7.2 - -3.53 -0.39 2.45 0.32 -9.83 - 2.2 - -7.54 - - 2.23 -1.23 2.16 -1.92 1.27 1.24 -2.55 -0.54 -0.18 -2.38 -3.53 1.7
-0.67 -0.2 -1.5 -1.5 -1.44 -1.3 0.97 -3.38 -1.26 -3.72 -1.7 2.27 0.11 0.26 -1.13 -4.0 1.23 -5.26 -5.36 -3.69 -3.07 1.84 -1.58 -2.26 1.21 1.27 1.52 -1.03 0.35 0.78 -0.91 -1.29 -0.31
- - -4.11 -1.95 -3.76 - - - - -1.81 -4.14 - 1.43 - - - 2.58 - -1.74 - - -3.05 4.23 0.04 -0.09 -1.98 0.61 -2.64 -1.55 -4.03 - - -3.93
-0.21 -0.53 -2.29 -2.01 -2.27 -2.71 -0.94 -3.78 -3.78 -2.68 -0.22 1.02 0.54 0.73 0.32 -0.31 1.31 -0.5 0.41 0.45 0.32 0.01 1.88 -1.25 0.33 0.08 0.14 -0.57 -0.08 0.45 0.13 -0.26 0.24
- - -8.26 - -8.17 - -7.91 -5.71 - - -0.79 3.58 1.17 1.33 - -2.04 1.36 -1.17 -4.89 -4.63 -4.92 0.77 0.25 - 1.55 1.76 1.63 - - - - - -
-5.09 -5.05 -7.17 -7.35 -8.37 - 0.01 -8.18 -9.42 -6.93 -2.59 0.78 1.3 0.22 -3.95 -3.69 1.78 -4.17 -4.27 -3.98 -4.15 0.05 2.47 1.39 1.61 0.85 1.41 0.01 -0.17 0.09 -0.36 0.07 0.12
-7.27 -5.62 -8.44 -8.78 -9.14 - -0.04 -9.82 - - -2.43 0.61 1.27 0.28 -4.23 -3.8 1.74 -4.49 -4.02 -4.01 -3.55 -0.42 2.61 1.29 1.56 1.22 1.84 -0.42 -0.4 -0.11 -0.87 -0.66 0.21
-4.09 -3.7 -7.44 - -5.16 -6.07 1.36 - -4.32 - -0.15 1.64 0.45 0.92 -3.59 -1.14 2.72 -3.03 -2.77 -2.01 -1.17 -0.58 0.95 -2.36 1.46 1.13 1.19 -2.29 -1.57 0.65 -1.09 -0.06 0.33
-2.53 -1.02 -2.67 -3.22 -4.33 -2.87 1.38 -3.1 -3.77 -5.54 -0.11 1.66 0.84 1.34 -3.42 -0.67 1.65 -0.14 -1.01 -0.71 -1.14 0.32 0.46 -1.82 0.95 0.91 0.92 -1.71 -0.57 0.92 -1.0 -0.17 0.54
0.2 0.33 -1.15 -1.44 -1.27 0.21 1.24 -2.14 -2.9 -1.32 -2.91 1.72 0.4 0.14 -1.42 -2.58 1.51 - -1.45 -1.67 -2.92 0.54 -0.26 -1.67 0.67 1.3 1.52 -1.27 -0.33 0.65 -1.03 -0.61 0.65
- -3.96 -3.19 -2.59 -0.59 -2.74 - - - - - -2.62 - - - - 3.69 - - - - - - - - 1.48 1.37 1.34 -0.45 -0.18 0.67 2.46 1.08
- - -3.14 - - - - - - - - - 2.24 - 2.31 - 2.7 - -0.77 - - - - - 3.9 - -0.11 - - -1.87 - - -
-7.74 -8.84 - -7.05 -6.22 -6.06 0.62 - - - 1.06 0.53 0.89 0.69 -0.69 1.05 0.98 0.22 0.94 1.02 0.52 1.09 1.29 -0.15 0.52 -0.95 -0.75 -0.74 -0.21 0.08 -0.41 -0.38 0.19
-0.03 0.2 -0.96 -1.27 -1.63 -1.79 1.38 -2.17 -1.63 -1.59 -2.34 1.32 -0.17 -0.71 -4.3 -3.39 1.6 -2.9 -2.74 -5.39 -5.36 0.77 1.64 -2.74 0.89 0.23 1.06 -1.77 0.33 1.36 -2.02 -1.71 1.77
-5.72 -3.26 - - -4.28 -3.2 1.58 - - - -1.18 1.74 1.27 1.44 - -1.07 1.68 -3.91 -1.69 -4.08 - 0.96 0.8 -1.65 2.36 -0.14 1.06 -3.1 -0.87 0.92 -2.43 -3.36 0.81
- - - -2.1 -4.41 - - -1.62 - - 0.97 -0.78 0.84 - - -0.38 2.54 0.3 1.4 0.13 - -1.71 3.6 1.46 -2.06 -5.35 0.07 - - - - - -
-4.47 -3.04 - - -7.54 - -3.71 - - - - -5.24 -1.4 -2.24 - - 2.55 - - - - 0.71 -0.04 -0.79 0.23 -0.72 0.21 2.11 1.65 1.54 1.68 1.97 1.43
- - - - - - - - - - - 1.19 1.49 - - - 1.93 - - - - 0.87 2.87 2.31 1.23 2.06 1.78 - - - - - -
- - - - - - - - - -3.96 -0.5 -0.03 1.4 1.36 - - 1.39 - -0.79 -0.85 -0.08 1.45 3.32 1.65 2.22 -1.78 -0.95 - - - - - -
-8.07 -7.16 -6.95 -8.78 - - -3.93 - - - -2.88 -3.1 2.11 - - -7.09 2.43 -3.75 -6.03 -6.09 - -3.48 2.36 2.73 2.37 0.96 1.51 -2.98 -1.96 -1.4 -2.9 -3.43 -4.79
- - - - - - -1.38 - -1.37 1.35 - - - - - - 2.46 - - - - - 4.38 1.39 - - - - -1.38 -1.36 - - -
-5.05 -3.71 -4.62 -6.49 -7.92 -7.08 0.34 -9.27 -7.95 -6.66 -2.25 0.66 1.7 0.16 -4.37 -3.64 1.95 -6.38 -3.89 -3.95 -3.58 -0.39 2.38 2.03 1.74 0.14 0.71 -0.3 -0.4 0.06 -0.79 -0.53 0.19
-3.36 -4.82 -5.07 -7.14 -4.24 -3.52 1.21 -5.2 -6.36 -3.62 0.84 1.91 0.89 1.82 - 0.11 1.8 0.01 -0.34 -0.61 -1.06 0.87 -1.95 -3.44 1.22 0.73 1.02 -2.06 -1.23 0.06 -1.32 -0.69 -0.11
- - -5.27 - - -3.0 - - - -2.97 -0.61 3.32 2.2 -0.16 - -1.37 1.44 - -2.9 - -2.93 0.35 1.23 - 2.35 1.31 1.04 - - - - - -
- - -7.8 - - - -3.18 - - - - -3.85 2.06 - - - 2.65 - -6.26 - - -3.41 2.55 2.37 2.21 1.26 1.64 -3.76 -2.08 -1.04 -2.7 -3.55 -3.68
- - - - - - -0.92 - - - - - 1.4 - - 1.37 3.21 - 1.11 -0.95 0.08 -1.79 3.34 - 0.76 -1.29 0.48 - -1.7 - - - -
- - - - - - - - - - - - - - 2.46 - 3.38 - - - - - - 0.88 3.76 - 0.78 - - - - - -
- - - - - - - - - - - - - - - - 2.76 - - - - - 4.71 - - - - - - - - - -
-1.25 -1.33 -3.93 -4.08 -5.38 -2.86 0.23 -5.6 -4.0 -4.71 0.06 1.32 1.9 0.36 0.89 0.0 1.94 -0.72 -1.28 -1.39 -1.16 1.37 1.41 -1.55 1.42 0.66 0.95 -1.88 -2.58 -1.33 -2.64 -2.08 -0.97
- - - - - - - - - - - - - - - - 2.0 - - - - - 4.86 - - - - - - - - - -
-5.33 -2.06 -5.47 -4.13 -6.57 - 0.62 -6.11 - -5.69 0.65 1.4 1.02 0.74 -4.26 -0.26 2.05 -0.02 -0.93 -0.77 -0.8 0.63 -0.06 -2.71 1.12 1.64 1.47 -1.88 -1.23 0.44 -0.89 -1.16 0.75
-7.82 -6.51 -8.01 -7.86 -9.42 - 0.28 -9.03 -7.52 - -2.93 2.65 1.26 2.4 - -5.62 2.08 -6.04 - -6.21 -4.85 0.54 -0.2 -2.78 2.15 1.67 1.46 -4.44 -5.55 -2.31 -4.21 -4.84 -2.56
-1.3 -0.89 -4.27 -4.69 -3.34 -3.58 1.62 -3.02 -3.74 -2.0 0.21 1.67 0.04 1.35 -0.5 -0.95 1.39 -0.55 -0.89 -1.23 -1.08 1.28 -0.93 -1.21 1.48 0.88 1.01 -2.01 -0.13 0.34 -1.68 -2.08 0.45
- -3.26 - - - - -3.06 - - - -3.4 - -1.19 -0.7 - - 2.11 - - - - 0.05 0.22 -1.1 0.69 -0.75 0.36 1.78 1.85 1.69 1.76 2.16 1.6
-5.33 -3.97 -2.86 - -5.39 - -0.54 - -5.03 - -0.87 1.56 0.47 0.29 -1.45 -2.12 2.43 -0.55 -0.95 -1.55 -4.68 1.29 1.04 -0.48 0.97 0.66 1.32 -1.58 -0.42 1.08 -0.44 0.59 0.75
- -5.51 -7.57 - - - -0.15 - - - 0.89 1.55 1.54 0.62 -1.96 0.11 1.09 -0.5 0.12 0.64 -0.08 1.06 1.53 -0.79 1.1 -0.15 0.22 -1.63 -0.83 0.65 -1.06 -0.27 0.65
-2.72 -1.48 -4.17 -5.85 -3.68 - -0.1 -1.98 -1.61 -4.18 -1.43 2.8 0.54 2.58 - - 1.91 -3.07 - - - 0.22 -0.99 -1.92 2.22 1.36 1.28 - -3.36 -2.44 -4.78 - -2.18
-2.0 -3.02 - - -5.5 -3.38 -2.7 - - - -1.8 2.08 0.45 0.84 -0.19 -0.92 2.86 -1.17 - -0.68 -2.31 1.25 1.72 -2.5 2.24 0.49 1.48 - - - - - -
-3.93 - -4.97 -5.22 - - -1.33 - - - -1.55 1.2 1.55 -0.98 - - 2.76 - -3.47 - - 1.39 0.35 2.4 2.1 1.41 1.22 -1.4 -5.46 - -2.06 -1.11 -
-8.55 -6.47 -6.55 -6.67 -6.22 -7.61 -0.86 -6.71 -5.23 - -1.57 -0.87 -0.79 -1.64 -1.04 -1.31 4.52 -2.87 -1.57 -1.32 -1.78 -0.25 -0.74 -0.69 -1.37 -1.33 -1.23 -1.43 -1.31 -1.69 -1.1 -1.33 -1.39
-3.78 -2.51 -5.53 -3.2 -2.99 -3.95 1.48 -2.12 -2.99 - -2.67 1.47 0.82 -0.19 - -0.79 1.9 - -5.43 - -5.47 1.09 1.96 -5.66 1.08 1.26 1.42 -3.69 -1.47 0.8 -2.13 -2.65 1.84
-2.64 -2.28 -1.95 -1.93 -1.3 -0.82 -1.93 -0.55 -0.32 1.28 -6.85 -0.39 2.32 -0.99 -4.74 - 2.89 - -2.96 - - -1.78 1.79 -5.99 2.75 0.44 0.36 -6.82 - - - - -
0.2 0.04 -0.12 -0.45 -0.5 -1.44 0.57 -0.96 -1.63 -0.94 -0.48 0.12 0.24 0.32 -0.99 -1.3 1.22 -1.03 -0.94 -1.13 -0.86 0.87 0.99 -0.65 0.89 -0.29 -0.24 -0.08 0.39 0.58 0.15 0.18 0.85
-1.87 -0.14 -3.78 -2.82 -2.8 -3.67 -0.55 -2.83 -1.01 -1.41 -0.84 1.33 1.45 0.78 -4.49 -3.99 1.69 -1.02 -2.2 -1.83 -1.97 1.78 1.05 -0.59 0.89 -0.73 -0.17 -1.01 -0.87 1.31 -0.6 0.66 1.21
-7.6 -3.78 -7.43 -8.67 -6.17 -7.1 0.34 -5.63 -5.23 - 0.57 2.02 0.82 1.4 -1.39 -0.97 1.21 -1.95 -2.52 -2.03 -1.86 1.28 0.9 0.38 1.37 -0.52 -0.31 -0.26 0.07 0.9 0.27 0.35 0.63
-4.18 -2.54 -3.32 -3.9 -2.41 - -1.77 -3.96 -4.51 - -0.76 - -1.54 - -0.46 -0.29 2.35 -0.64 1.42 2.15 0.74 -0.88 0.02 -1.78 -0.16 0.78 1.27 -0.08 0.56 0.84 -0.09 0.75 0.43
-5.72 -5.18 -8.12 -8.38 - - 1.36 - - - -0.51 1.73 1.78 1.45 - -0.45 1.91 -1.56 -2.1 -2.16 -5.07 1.17 -1.19 -1.45 1.14 1.08 1.21 -3.05 -0.84 0.87 -0.8 -0.28 0.39
- - -2.42 - -3.5 -1.35 - -3.1 -4.6 0.46 0.3 -0.03 2.03 1.67 -0.6 0.18 0.76 0.79 -0.64 -1.7 -0.25 1.82 2.62 1.08 0.75 -1.86 -0.8 - - - - - -
-5.79 -6.81 -6.06 -7.21 -7.39 - 0.35 - -6.28 - -0.26 1.21 1.63 0.87 -4.0 -1.24 1.81 -1.65 -2.34 -1.68 -1.86 0.82 1.25 -0.39 1.1 0.68 1.25 -0.62 -0.73 1.02 -0.28 0.32 1.06
-4.11 -1.24 -3.97 -3.4 -3.19 -3.48 0.27 -6.66 -1.94 -7.95 -3.38 2.05 0.49 -0.9 -2.42 -2.33 1.83 - -4.77 - -6.39 2.19 -0.45 -1.15 0.99 1.47 1.64 -0.07 1.04 0.76 -0.51 -0.41 -0.44

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.