Heatmap: Cluster_79 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - -5.86 -4.66 - - - 1.68 0.01 2.34 - - -1.53 - - - -4.87 3.5 2.19 -1.2 2.61 -7.05 -2.2 -2.91 -2.96 -3.89 -2.82 -3.24 -4.78
-1.67 -1.56 -4.14 - - - -1.87 -3.24 - -3.57 - 0.33 2.3 1.81 - - -8.97 - - - - 2.81 1.73 -1.05 3.5 - - - - - - - -
- - - - - - - -3.35 - - - -0.5 3.48 - - - -4.65 - - - - 3.6 1.91 1.25 1.45 - - - - - - - -
-3.91 -3.89 -6.4 - -6.07 - -3.88 -3.69 -4.26 - - 1.92 1.73 0.14 - - -3.59 - - - - 4.09 2.08 -1.22 1.17 -4.79 -2.03 - - -5.79 -4.99 - -4.74
- - - - - - -3.57 - - - - -0.53 - 3.55 - - - - - - - 4.36 - - - -4.45 - - - - - - -
- - - - - - -3.9 - - - - 1.23 1.38 2.51 - - -1.34 - - - - 3.38 0.95 0.05 0.02 -2.08 -0.16 0.57 -0.82 -0.36 -0.23 1.17 -1.34
- - - - - - - - - - 0.43 1.55 0.92 2.44 0.67 0.39 -0.94 -0.97 -0.37 0.38 0.36 3.25 - -3.62 2.18 - - - - - - - -
- -1.56 - - - - -5.74 -5.53 - - - 1.74 -2.94 1.56 - - -5.97 - - - - 4.68 -4.81 - -0.84 -7.93 -5.4 - - - - - -
- - - - - 0.87 - 0.74 - - - 1.73 1.88 - - - -0.44 - - - - 3.01 - - 3.78 - - - - - - - -
- - - -2.95 -3.51 - - -2.02 - - - 1.15 1.63 1.68 - - -0.37 - - - - 3.66 1.96 -2.42 2.35 -1.3 -0.14 - - -3.12 - - -
- - - - -3.58 - - -2.13 -0.28 - - -0.28 1.64 3.17 - - -2.92 - - - - 3.87 1.31 -0.53 - -4.5 -3.95 -2.01 -1.64 - - -2.31 -3.26
- -5.95 - - -6.36 - -4.19 - - - -1.16 0.69 0.61 1.74 -1.9 -0.99 0.64 -1.83 0.62 -1.66 0.58 3.67 -1.23 0.77 -1.3 -0.18 0.6 -0.66 -1.16 -2.72 -2.19 -0.23 -4.08
- - - - - - -5.88 - - - -2.61 -0.12 2.49 2.17 -2.41 -1.65 -7.01 -2.49 -3.44 -1.82 -3.47 3.6 - 1.37 2.56 - - - - - - - -
- - - - - - - - - - - -0.53 2.54 -1.11 -0.52 - -0.96 - - - - 3.29 1.91 - 2.07 -4.35 -0.81 -1.26 -0.13 0.92 -0.21 -0.16 0.53
- - - - - - - - - - -0.0 -0.31 -1.38 - - -1.4 -1.17 - -0.75 - -0.05 4.43 - 2.76 - - -3.4 - - - - - -
-0.15 0.14 -1.65 -1.16 -2.22 -2.61 -0.32 -1.67 -0.91 -2.92 -0.19 2.27 -0.36 1.91 1.0 -0.52 -1.41 -0.18 -0.17 -1.02 -0.16 2.55 -1.2 -1.93 0.67 -0.55 -0.83 -1.42 -1.33 -2.09 -1.4 -1.1 -1.57
- - - - - - -6.23 - - - -2.55 1.55 3.03 0.68 -5.17 - -1.6 - - - - 3.86 - -0.18 2.14 - - - - - - - -
- - - - - -3.33 - - - - - 0.61 - 3.55 - - -5.37 - - - - 4.24 - - -3.16 -2.42 -0.99 - - - - - -
- -5.28 -7.85 -8.45 -10.12 -7.56 -4.66 - -8.94 -8.77 -6.33 1.77 -4.71 2.46 -7.93 - -2.54 - - - - 4.42 0.72 -1.49 -2.2 -3.7 -3.43 -5.1 -9.05 - -8.8 -6.81 -7.33
- - - - - - -4.85 -6.04 -5.8 - - 1.18 1.5 1.42 -5.21 - -2.93 - - - - 4.61 -2.14 - -1.51 -8.34 -8.2 - - - - - -
- - - - - - -6.06 - - - -2.38 3.17 -0.09 1.49 - -5.09 -6.4 - - - - 3.63 - - 2.93 -6.73 -4.96 - - - - - -
- - - - - - - - -1.34 - - 3.28 -0.5 -0.42 - - 0.01 - - - - 3.43 2.46 -0.67 1.62 -2.73 -1.67 - - - - - -
- - -4.13 -3.43 -3.78 -6.02 -3.62 - - - -6.85 1.87 1.16 2.39 - - -2.96 - - - - 4.08 0.96 -1.97 0.97 -6.34 -1.76 - - - - - -
- - - - - - - -2.59 -2.75 - - 0.84 2.39 2.99 - - - - - - - 4.02 - -0.99 -0.12 - - - - - - - -
- - - - - - - - -3.59 - 0.81 2.56 1.84 1.46 -2.66 0.03 -6.24 - - -2.02 - 3.46 - -1.41 2.61 - - - - - - - -
- - - - - - -5.89 -4.68 -3.84 - -5.93 2.19 -1.53 3.2 - - -3.63 - - - - 4.14 -4.37 - -0.44 -2.89 -2.73 - - - - - -
-1.03 -0.97 -1.11 -0.29 -0.44 -0.65 0.5 -1.08 0.11 -0.65 -1.47 2.53 0.53 0.4 -2.83 -2.08 -0.01 -3.76 -5.08 -3.56 -4.12 3.17 -0.83 -1.43 1.98 -2.97 -1.55 -3.83 -3.32 -2.32 -4.94 -2.68 -1.61
- - - - - -7.08 - - - - - 1.53 1.48 0.25 - - -0.37 - - - - 3.69 2.2 -2.96 2.88 -5.62 -1.79 - - - - - -
-1.32 0.12 -5.55 -7.87 -4.94 -6.8 -0.46 -4.61 -5.96 -5.51 -2.02 1.45 -0.71 0.93 - -5.75 -0.01 -3.59 -2.74 - -4.02 4.26 1.32 -5.33 0.66 -2.13 -1.49 - -6.38 -6.72 - - -7.65
-3.19 -3.2 -4.52 -3.06 -3.25 -2.92 -1.26 -4.96 -4.78 -5.1 -0.75 2.51 -1.56 2.28 -0.87 -0.99 -1.76 -0.86 -1.05 -1.15 -1.12 3.69 -0.87 -2.68 0.61 -0.36 -0.27 -6.57 -4.68 -3.03 -4.83 -5.4 -4.06
- - - - - - - - - -1.98 - 1.7 - 2.87 - - -4.2 - - - - 4.37 - - 0.48 - - - - - - - -
- - - - - - - - - - - 0.4 2.68 2.04 - - - - - - - 4.24 - 0.16 0.16 - - - - - - - -
- - - - - - -7.74 - -7.61 -10.37 -2.15 0.69 1.09 2.31 -2.12 -1.67 0.7 -2.42 -2.14 -1.7 -2.03 3.76 2.0 -1.56 0.15 -0.47 0.34 - - - - - -
- -0.74 - - -1.24 - 1.59 - - - - - 2.0 - - - - - - - - 4.11 1.94 0.81 1.1 - - - - - - - -
-3.8 -6.42 -6.23 -6.11 - - - - - - -3.86 0.76 1.55 -0.44 - - -4.93 - - - - 2.83 1.37 -0.91 4.11 - - - - - - - -
-0.56 -0.68 -2.16 -4.9 -7.18 - 1.56 -4.47 -4.56 - -2.49 2.68 0.82 2.89 - -2.23 -2.7 -2.85 -5.76 -2.37 -3.21 3.11 -4.27 -0.56 0.94 -3.07 -3.42 -5.17 -5.85 -3.31 -6.95 -5.22 -2.99
-0.7 -1.4 -0.74 -1.54 -0.71 -1.99 -2.48 -1.3 -0.39 -2.74 -2.69 2.44 -2.63 2.89 - - -5.09 - - - - 3.78 - - 0.48 -2.74 -2.23 - - -7.65 - - -7.59
- -2.72 - - - - -2.98 -0.46 - - - 1.39 -1.79 2.49 - - -2.14 - - - - 3.98 0.27 -2.18 -0.67 -2.2 -1.15 -1.44 -0.11 -0.2 0.73 -1.85 -0.77
- - - - - - -1.32 - - - - - -0.34 3.2 - - - - - - - 4.33 - - 0.78 - -0.3 - - - - - -
- - - - - - -3.76 - -4.7 - - 0.88 -0.85 3.07 - - -3.87 - - - - 4.07 2.33 -3.95 - -4.25 -3.27 - - - - - -
- -7.03 - -6.36 - -5.43 -6.28 - -5.23 -4.65 -4.6 2.55 -0.47 1.52 -2.63 -1.72 -2.96 - -2.93 -4.32 -2.7 3.81 0.12 -3.89 1.22 -0.59 -0.09 - -2.41 0.79 -1.95 -3.98 0.11
-1.41 -0.89 -2.65 -2.3 -2.79 -1.65 -0.38 -2.37 -1.11 -0.06 -0.4 1.52 -0.17 2.24 -0.0 0.51 -4.81 -0.01 -0.52 -0.19 -0.18 3.11 - -1.45 -0.62 - -10.08 -0.99 -0.95 -0.38 -0.51 -0.49 -0.24
-5.84 -5.57 -6.17 - - - -4.22 -4.62 -2.31 - - 1.75 -2.37 0.73 - - -1.86 - - - - 3.92 2.97 - 2.02 -7.03 -3.6 - - - - - -
- -2.83 -2.56 - - - - - - - - 2.24 - 0.2 - - -2.28 - - - - 4.32 1.44 0.95 - -1.44 -0.34 -2.1 -1.86 - - -1.85 -
-6.44 -6.88 - -8.74 -9.79 - -3.87 - - - - 1.81 1.7 0.76 - - -2.55 -8.46 - - - 4.16 1.85 -0.91 0.84 -4.24 -1.65 -5.07 -5.56 -5.13 -6.0 -7.37 -3.93
-2.07 -1.38 -2.92 - -6.26 -5.26 - - - - - 1.08 1.62 1.51 - - -6.17 - - - - 3.02 1.64 -0.49 3.61 - -5.89 - - - - - -
- - -6.37 - - - - - -2.73 - - 1.27 - 1.11 - -4.13 -9.98 - - - - 4.81 -5.75 - -3.59 - - - - - - - -
0.2 -1.39 -0.42 -1.31 -3.53 -4.88 -0.51 - -3.45 - -2.25 1.67 0.53 -1.65 -3.74 -0.88 -3.79 -4.67 - -1.75 - 3.39 1.67 -1.41 2.04 -2.21 -2.56 -0.72 -0.19 -0.54 -0.65 -0.27 0.06
-6.91 - - -6.2 - - -6.2 -3.64 -6.58 -3.69 -3.05 1.52 0.94 0.52 - -5.27 0.9 -4.1 - - -4.24 3.86 0.46 1.28 2.41 -2.89 -1.62 - -4.25 -6.18 - - -1.49
- - -7.21 -6.49 -6.86 - -4.42 - - - -6.14 0.22 2.54 2.11 - -7.17 0.74 - - - - 4.12 -0.9 -7.33 0.55 -4.7 -1.2 -5.78 -7.15 - - -6.9 -7.01
- -2.9 -6.43 -5.56 - - 1.44 - - - -2.46 2.86 1.13 2.31 -4.86 - -2.67 - -2.89 -2.95 -4.92 3.3 - 0.62 1.55 -5.1 -3.73 - -3.29 -2.42 - -6.02 -1.72
-1.27 -0.78 -0.95 -1.82 -0.49 -0.09 -1.04 -1.48 -1.12 -2.65 - 2.27 -2.14 2.33 - -4.56 -3.02 -3.81 - -3.56 - 3.6 0.56 1.89 -1.26 - - - - - - - -
-3.73 - - - - - -3.25 -4.65 - - - 1.47 3.3 - - - -3.96 - - - - 2.99 -4.93 -5.06 3.24 -1.52 1.17 - - - - - -
- -6.31 - - - - -3.26 - - - - -0.66 2.93 - - - -2.09 - - - - 2.44 - - 3.9 -0.67 1.72 - - - -3.33 - -
- - - - - - - - -1.44 - - -0.52 2.96 - - - - - - - - 3.25 -0.63 -0.76 3.62 -1.44 -1.22 - - - - - -1.41
- - - - - - -5.19 - - - - 1.82 -1.43 1.2 -7.85 - -2.0 - - - - 4.39 -8.56 -1.3 2.27 -3.41 -3.0 -6.23 -6.65 -11.43 - -6.37 -3.94
- -8.59 - - - - -3.66 - -6.72 - -2.47 3.31 1.13 1.33 -4.2 -4.88 -4.14 -4.72 - -4.88 -5.85 3.56 -2.39 -1.65 2.47 -7.72 -5.4 - - - - - -
-0.3 -1.54 -1.88 -3.29 -0.93 -1.31 -1.98 -1.39 -2.2 -3.6 -2.56 2.43 -2.34 1.8 -2.42 -2.87 -2.49 -2.71 -4.04 -2.1 - 3.41 1.73 2.15 -0.97 -4.02 -4.01 -3.4 -4.64 -4.59 -3.84 -4.4 -2.85
- - - -3.7 -2.43 - - -0.84 1.57 - - 1.06 0.84 2.62 - - -3.57 - - - - 4.22 -4.91 -1.58 - -6.05 -3.74 - - - - - -
- - - - - - -5.07 -6.45 - - - 0.94 2.41 2.48 - - -2.99 -5.52 - - - 3.49 2.81 -4.26 0.69 -5.99 -3.29 - - - - - -
-2.79 -4.75 -6.19 - -4.51 - -3.85 - - - -2.43 3.51 0.46 -1.05 - - -2.3 - - - -1.35 3.43 - -0.54 2.84 - -6.12 - - - - - -
- -3.67 - - -6.13 - -2.26 - - - -1.84 2.88 1.66 1.1 -3.22 -4.9 -7.43 - - -3.9 - 3.41 -4.93 -1.74 3.09 -8.12 -4.49 - - - - - -
- - - - - - -4.08 - - - - 0.55 1.4 1.6 - - 0.62 - - - - 4.12 1.88 -2.28 0.47 -0.57 -0.08 - - - - - -
- - - - - - - - -4.5 - - 1.87 0.49 0.7 - - -0.98 - - - - 4.28 2.03 -2.2 0.41 -3.22 -0.91 - - - - - -
0.25 -0.76 -2.38 -1.54 -2.73 - -1.96 - - - -4.03 1.77 0.36 1.83 -1.92 - -0.5 - -1.96 -4.02 -2.99 4.04 - -1.01 1.73 -2.51 -3.08 - - - - - -
-4.09 -2.4 -4.94 - - - -1.97 - - - -1.54 2.41 1.44 2.55 -0.79 -2.47 -0.89 - -4.41 -4.47 -4.44 3.58 1.02 -3.05 0.47 -1.91 0.07 - - - - - -
-4.87 -4.66 -6.49 -7.04 -4.97 - -4.2 -6.02 - - - 3.15 -1.28 0.93 -5.25 - -0.76 - - - -6.31 3.69 2.46 -1.55 1.1 -7.55 -3.68 - - - - - -
- - - - - - - -2.25 -1.82 - - 1.55 2.87 2.43 - - -1.06 - - - - 3.38 1.8 0.35 -2.36 -2.0 -0.36 - - - - - -
- - - - - - - - - - - 0.43 -0.2 2.61 - - -1.54 - - - - 4.2 1.54 - 0.89 -2.69 0.07 - - - - - -
- - -7.56 - - - -6.09 - - - -7.14 1.05 0.49 1.93 - - 1.02 - - - - 3.98 2.03 0.9 -0.35 -2.19 -0.17 - - - - - -
- - - - - - - - - - -0.7 0.95 - 1.35 - -1.06 - - - - -0.36 4.68 - - -0.26 - - - - - - - -3.28
- - - - - - - - - - - 1.53 2.32 1.89 - - -1.28 - - - - 3.63 2.08 0.9 1.13 -5.17 -6.28 -3.8 - -4.68 -3.72 -2.83 -
- - - - - - - - - - - - - - - - -0.95 - - - - 5.02 - - - - - - - - - - -
-1.47 - -3.45 - -1.63 - - - - - -0.28 0.67 0.79 - - -0.41 -0.27 - - - - 3.85 -1.44 1.23 2.89 -2.58 -1.38 -2.25 - - -0.79 -1.24 -2.22
- - - - - - - - - - - 2.7 - 2.51 - - - - - - - 4.38 - - - - - - - - - - -
-2.7 -2.67 -4.88 -4.13 -5.66 - -0.89 - - - - 2.98 -0.36 -0.72 -3.34 - -3.88 - - - - 4.01 -1.1 1.6 1.57 -4.85 -4.75 - - - - - -
- - - - - - - - - - - 2.62 2.04 1.47 - - - - - - - 4.26 - -1.59 -1.3 - -4.79 - - - - - -
- - - -7.82 -8.45 - - -4.97 - - -1.77 1.38 -1.2 3.27 -6.11 -2.21 -2.68 -2.34 -2.34 -3.21 -4.59 3.83 0.79 -5.37 1.6 -8.4 -5.05 - - - - - -
-2.11 -1.47 -2.45 -2.94 -3.4 -2.07 0.77 -3.74 -3.7 -2.72 -0.99 2.52 0.77 2.51 -0.91 -0.38 -0.7 -0.49 -1.4 -0.71 -1.15 2.71 -2.93 -0.25 1.81 -4.4 -4.39 -4.75 -2.06 -1.55 -3.18 -3.43 -3.27
- - - - - - - - - -3.98 -1.41 0.76 2.8 2.63 0.12 -1.65 -1.08 -2.22 -3.91 - - 3.47 1.78 - -1.03 -4.26 -2.96 -3.96 - -4.88 -3.27 -3.0 -4.86
-4.76 -3.96 -3.75 -3.52 -4.78 -2.06 -4.01 -4.59 -4.46 -5.66 -4.09 0.94 -0.8 1.9 -1.46 -1.98 -3.26 -5.56 -3.44 -3.31 -6.28 4.06 0.26 0.86 1.36 -5.31 -3.84 -1.72 -2.82 -2.55 0.04 -0.02 -3.21
-0.89 -2.16 -0.13 -0.5 -0.71 -1.32 -0.46 -1.68 -1.56 -1.62 -2.9 1.65 2.23 -0.8 -1.93 -6.54 0.37 -1.47 -3.24 -4.55 -4.06 3.35 -1.27 1.6 0.74 -1.59 0.57 -6.13 -5.86 -4.91 -6.96 -5.83 -7.44
-4.03 -2.67 - -6.94 -7.45 - -3.68 - - - -6.11 3.22 -3.33 0.36 -5.15 - -2.24 - - - - 3.72 2.49 -2.26 1.4 -6.1 -4.16 - - - - - -
-7.35 -6.27 - -7.77 -9.43 - -7.04 - - - -5.68 1.17 -2.66 2.4 -0.87 -7.07 -3.17 - -7.01 -7.08 -6.05 3.84 1.63 1.76 -1.19 -4.25 -3.53 -0.23 -1.74 -2.08 -1.72 -2.69 0.43
0.45 0.35 -5.08 -3.04 -5.81 -3.08 -1.3 -4.36 - - - 2.2 - 2.44 - - -4.04 - - - - 4.24 -1.93 - -2.3 -6.44 -2.5 - - - - - -
-2.44 -1.76 -4.04 -3.58 -6.66 - -1.1 -5.1 -3.5 -5.95 - 1.36 1.05 -0.84 - - 0.41 - - - - 3.94 1.1 0.89 2.45 -2.83 -1.74 - - - - - -
- - - - - - -4.87 - - - - 2.31 - 3.11 - - -5.72 - - - - 4.22 - - -0.47 - -7.95 - - - - - -
- - - - - - - - - - - - - - - - - - - - - 5.03 - - - - -1.72 - - - - - -
- - - - - - - - - - - 1.57 - 2.07 - - -6.05 - - - - 4.64 - -3.43 -1.55 -1.68 -2.74 - - - - - -
-6.92 -6.16 -4.35 -7.1 -6.02 -4.38 -5.13 -6.26 -5.34 - -2.32 1.72 0.97 2.18 -1.54 -2.76 -1.79 -3.43 -3.7 -4.18 -3.34 3.96 1.91 -3.6 0.22 -2.95 -1.36 -4.37 -3.22 -2.88 -3.67 -4.04 -2.87
- - - - - - - - - -2.38 - 3.14 -2.47 1.24 - - 0.38 - - - - 4.21 -0.88 -1.64 -0.35 - - - - - - - -
-0.73 -1.54 - - -3.66 - -2.38 -1.56 -1.71 -2.77 -3.45 2.24 0.92 1.98 - - -1.29 - - - - 3.94 -0.88 1.73 -2.3 -2.49 -1.32 - - - - - -
-0.55 0.28 -2.76 -3.93 -3.89 -4.28 0.42 -3.56 -2.27 -2.77 - 2.15 1.58 2.93 - -3.06 -1.95 - -2.45 -3.06 -3.48 3.48 -0.07 - -0.04 - -5.3 -5.0 - -6.25 - -5.23 -4.4
- - - - - - - - - - - 1.31 1.86 2.56 - - -2.22 - - - - 3.98 - -1.17 2.13 -6.33 -2.69 - - - - - -
-5.52 -1.84 -5.08 - - - -1.73 - - - - 2.7 -3.83 2.05 - - -4.7 - - - - 4.26 - - 1.29 - - - - - - - -
-8.08 -8.15 - - - - 0.48 -5.2 - - - 0.73 1.58 2.03 - -2.85 0.48 - - - - 3.86 -1.11 1.05 1.64 -3.21 -0.31 - -2.84 -4.22 - - -3.72
- - - - - - -0.91 - - - - 1.52 -3.56 0.98 - - - - - - - 4.73 - -2.73 - - - -0.5 - - -3.69 -3.63 -
- -3.12 -2.85 - -3.76 - - 1.16 -1.45 - - 0.55 1.08 2.01 - - -1.41 - - - - 4.27 - - -1.41 -4.48 -1.19 - -1.47 0.32 - - -1.43
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.