Heatmap: Cluster_412 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-1.99 -3.15 -3.14 -3.38 -2.94 -3.35 -2.42 -2.78 -3.51 -2.98 1.55 -0.22 -1.34 -0.67 0.6 0.42 -0.35 1.31 1.65 1.49 1.61 -2.04 -2.34 -2.15 -0.68 0.08 0.55 0.02 0.15 0.54 0.32 0.36 0.86
-3.9 -4.21 -3.99 -2.56 -1.22 -1.88 -2.52 -0.39 0.85 0.14 0.65 -0.65 -1.74 -4.52 1.06 0.6 0.18 1.26 0.97 1.23 1.09 -1.7 -2.48 -1.13 -2.79 1.09 1.37 -2.03 0.64 1.03 -0.79 -1.84 0.58
-1.84 -2.06 -4.19 -3.94 -3.0 -3.83 -1.91 -5.88 -4.31 -4.36 1.46 1.14 -1.53 1.41 1.41 0.39 -0.84 0.84 0.78 0.79 0.74 -0.57 -2.2 -1.81 0.11 0.69 0.1 -0.89 1.29 0.1 -1.43 -0.84 1.3
- - - - - - - - - - 1.99 -2.67 0.25 -2.19 1.52 2.03 -0.19 0.62 1.12 1.16 2.03 -1.94 -0.08 -3.11 1.64 1.13 1.34 -3.33 - - -1.73 -4.0 -
-4.87 -5.41 -3.89 -8.43 -5.81 - -4.5 - - -5.08 1.42 0.15 1.83 -1.78 -2.14 1.73 0.34 1.96 1.34 0.81 1.31 -2.26 -0.95 -4.43 2.06 -0.1 -0.26 -4.9 -0.53 0.2 -4.27 -4.05 -0.05
- - - - - - - - - - 1.59 - - - - - 1.44 - 2.52 - 1.49 1.46 - 0.71 2.59 1.81 2.27 - - - - - -
-4.87 -5.31 -5.44 -4.12 -4.71 -9.2 -2.9 -3.09 -4.5 -0.65 1.61 -1.85 0.4 -1.01 1.48 1.22 -0.2 1.19 0.74 0.64 0.85 -1.37 -0.85 -1.53 -0.96 1.12 0.95 0.59 -0.09 -0.24 0.45 0.46 0.58
- - - - - - - - - - 2.23 -4.23 -0.52 - 0.92 1.96 -0.22 0.15 1.62 1.6 1.92 -3.2 -0.13 - 0.76 0.55 1.0 -0.47 -5.06 - 1.23 -0.68 -5.21
-4.5 -3.85 -4.66 -3.42 -5.67 - 0.3 -5.09 -4.8 -2.71 0.79 0.72 -0.23 -1.69 1.11 -0.29 0.35 1.94 1.4 0.69 2.07 0.02 -1.06 0.91 -0.62 0.65 0.89 -1.0 -2.94 -2.03 -1.34 -0.4 -0.44
- - - - - - - -0.98 - -1.56 2.43 -3.05 0.09 - - 1.09 -0.42 - -0.75 1.72 1.65 -4.14 0.67 - 0.73 2.17 2.8 -1.13 - - -2.11 -2.03 -
-2.18 -1.71 -1.58 -0.88 -1.24 -1.53 -0.04 -2.66 -1.51 -0.83 0.74 0.69 -0.96 0.24 -1.62 0.18 -0.23 0.19 0.3 -0.37 -0.05 -0.5 -0.63 0.0 0.3 1.0 1.13 -0.01 0.2 0.66 0.04 0.44 1.81
- - - - - - - - - - 2.28 - - - 0.81 1.25 -0.15 -2.29 2.31 1.79 - -1.71 0.1 - -0.0 1.04 1.54 0.5 - - 2.28 -0.16 -
-3.54 -5.69 -3.48 -4.75 -4.39 - -2.37 -7.8 -4.07 - 1.32 0.12 0.02 0.23 1.15 0.8 -0.56 1.07 0.81 0.93 1.16 -0.67 -1.64 -0.67 0.04 1.28 0.71 0.05 0.32 0.44 0.18 0.22 0.52
- -2.12 -2.72 - - - 1.23 - - - 1.78 -0.32 - - 0.68 2.59 0.13 1.76 -0.35 1.17 1.2 - - -0.57 - 2.04 1.93 - - - - - -
- - - - - - -1.14 - - - 2.12 0.55 1.24 -1.11 - 0.92 -2.29 1.67 -0.02 2.74 -0.05 -0.0 - 0.3 1.05 1.68 1.34 - - - - - -
- - - - - - - - - - 1.75 -3.58 0.27 -2.95 -0.86 0.63 -1.08 0.99 1.52 1.13 2.12 -3.26 0.91 - 1.99 0.72 1.38 1.06 -6.52 - 0.68 -1.69 -5.08
-4.22 -5.7 -3.55 -2.87 -2.76 -2.18 -4.05 -4.75 -5.08 -4.22 1.35 -0.73 -0.74 -1.9 0.19 0.16 0.24 1.48 1.04 1.39 1.36 -1.57 -3.43 -2.39 0.21 0.98 1.15 0.51 0.26 0.65 0.28 0.34 1.02
-8.53 - -6.01 -5.67 -5.17 -4.77 -3.54 -8.64 - - 1.28 -1.17 0.27 -1.18 1.96 2.19 -0.2 1.32 1.68 1.47 1.45 -1.9 -4.11 -3.8 0.39 0.41 0.44 -0.88 -1.56 -0.84 -0.36 -0.58 -1.07
-6.45 - -9.7 - -9.61 - -4.64 -5.81 -6.12 -5.81 1.1 0.23 -0.92 -0.4 0.22 1.27 -0.09 0.59 1.0 0.75 0.77 -1.65 -1.83 -0.75 -0.26 1.08 1.18 0.83 1.12 0.72 1.1 1.03 -0.51
- - - - - - - -7.12 - - 1.94 -3.95 -0.42 - 0.48 1.73 -0.0 0.15 1.32 1.51 1.85 -4.26 -0.56 -4.2 1.04 0.89 1.48 0.28 -7.39 - 1.63 -0.45 -4.03
-5.93 -6.43 -5.06 -4.43 -4.24 -4.67 -3.9 -5.84 -7.02 -5.48 1.48 -0.54 -0.53 -1.41 0.3 0.53 0.09 1.56 1.12 1.47 1.3 -1.24 -2.86 -2.74 0.07 0.72 0.84 0.59 0.24 0.53 0.38 0.5 1.01
-7.28 -7.79 -7.21 -7.46 -6.74 -7.1 -3.73 -7.86 -8.87 -7.58 1.19 -0.7 -0.63 -1.76 0.39 0.5 0.15 0.94 1.39 1.54 1.62 -1.52 -2.64 -2.56 0.04 1.02 1.16 0.51 0.29 0.47 0.31 0.49 1.01
-5.64 - -6.49 - -6.24 - -3.49 - -3.25 - 0.98 -1.41 -0.75 - 1.73 1.03 0.56 -0.95 1.37 1.48 1.25 -1.41 -1.29 0.07 -2.43 1.25 1.71 -1.67 1.03 1.17 -0.93 -1.79 0.68
- -9.0 - - -9.39 - -8.13 - -8.48 - 1.28 -2.41 0.2 -4.16 -2.34 1.04 -0.99 0.6 0.87 1.14 1.43 -2.75 1.7 -7.32 1.95 1.46 1.97 0.63 -7.09 - 1.34 -2.91 -5.7
-6.89 -6.11 -6.44 -6.49 -7.17 -8.44 -3.0 -6.18 -6.12 -3.63 1.5 0.69 -0.1 1.03 1.46 0.94 -0.51 1.34 0.69 1.2 1.05 0.65 -2.58 2.41 -0.43 0.69 0.74 -3.98 -5.45 -4.5 -5.06 -3.22 -3.69
-1.5 -2.0 -1.62 -1.62 -0.56 -0.46 -0.46 -1.4 -1.02 -1.3 0.95 0.63 -0.28 -0.64 -0.27 0.94 -0.48 0.87 1.0 1.36 1.21 0.05 -0.49 -0.79 -0.22 0.55 0.6 -0.4 -0.14 -0.06 -0.46 -0.44 -0.08
-2.18 -1.99 -2.81 -2.82 -2.89 -1.76 0.62 -2.26 -2.31 -1.27 0.71 -0.43 0.7 0.24 -0.09 -0.89 0.15 1.1 -1.7 -0.09 -0.77 -0.02 0.23 0.49 0.31 1.24 1.18 0.4 0.2 0.12 0.77 0.85 0.3
- -3.21 - -2.36 -3.0 - - - - - -1.62 2.21 -0.74 3.41 - - 0.72 - - - - - - - - 3.02 2.58 - -2.68 - - - -1.03
-0.68 -0.5 -0.56 -0.22 -0.43 0.07 -0.27 -0.88 -0.72 -0.45 0.81 -0.12 -0.42 -0.67 0.28 0.51 -0.77 1.0 0.82 0.8 0.85 -0.32 -1.0 -0.87 0.51 0.53 0.47 -0.35 -0.65 -0.18 -0.48 -0.23 0.11
-1.12 -0.91 -1.51 -1.61 -1.89 -0.58 0.05 -1.99 -2.54 -0.77 1.14 0.66 -0.69 -0.09 -0.33 -0.13 -0.74 1.03 0.83 0.12 1.01 0.35 -1.32 -2.02 0.67 0.69 0.63 -0.75 0.27 0.71 -0.43 -0.57 1.16
-6.67 - -5.82 -7.21 -6.54 - -5.93 - -8.0 - 1.46 -1.7 0.94 -2.53 -1.86 1.37 -0.03 -0.16 1.25 1.57 1.98 -2.62 2.19 -3.6 1.93 0.26 0.62 0.15 -7.72 -6.38 0.15 -3.12 -4.99
-1.35 -1.5 -1.51 -1.82 -1.69 -1.22 -0.42 -1.68 -1.77 -1.5 0.51 0.89 -0.83 0.25 -0.37 -0.21 -0.71 0.88 0.53 0.3 0.9 -0.12 0.3 -1.69 -0.15 0.79 0.93 0.47 0.52 0.53 0.45 0.15 0.84
0.03 0.53 -2.85 -3.44 -3.63 -3.17 0.61 -3.6 -5.92 -5.27 2.05 0.04 1.37 -1.89 -1.71 0.39 0.54 1.29 0.6 -0.38 0.6 -0.66 -0.73 0.5 1.93 -0.34 -0.56 -2.91 -0.38 -0.09 -2.49 -2.64 0.05
- - - - - - - - - - 1.16 - - - -1.29 1.82 0.27 2.27 2.2 1.99 2.35 - - - -3.84 2.02 1.6 - - - - - -
- -3.13 - - - - - - - - 1.07 - - - -1.08 1.87 0.79 1.75 1.59 1.14 2.53 - -0.21 - -3.05 1.99 2.26 -2.6 -4.2 - -0.88 - -3.99
-7.39 -5.73 -10.22 -9.44 -6.57 -5.01 -5.81 -2.98 -5.66 -0.84 1.59 0.59 -2.07 0.31 1.38 1.56 -0.7 1.44 1.56 1.43 1.42 -1.75 -2.44 -3.08 0.36 0.84 0.83 -0.58 -0.42 -0.85 -0.89 -0.89 -0.88
- -9.17 - -9.16 -8.67 - -4.51 -5.82 -6.3 -2.39 2.07 -3.29 0.77 -1.98 1.52 2.23 -0.2 1.25 1.28 1.14 1.38 -2.45 -1.1 -1.74 -0.44 0.87 0.72 -0.62 -1.25 -1.32 -0.84 -0.89 -0.53
- - -4.94 - -5.7 - - -1.59 -2.64 -2.39 2.26 -1.91 -2.1 -2.54 -1.32 0.72 1.09 -0.28 -0.54 0.71 0.95 -2.66 1.77 -3.65 0.61 2.06 1.99 0.82 -1.09 -2.72 0.3 -1.21 -2.5
-0.74 -0.82 -1.03 -1.13 -1.19 -1.09 -0.53 -1.07 -1.21 -0.7 0.87 0.46 -0.44 0.07 0.9 0.93 -0.02 0.98 0.93 0.98 0.89 -0.29 -0.21 -0.93 -0.38 0.25 0.28 -0.57 -0.17 0.07 -0.52 -0.43 -0.15
- - - - - - - - - - 2.68 - -1.27 - 1.54 0.35 -1.23 2.32 1.71 1.95 1.55 - - - -0.74 1.58 1.46 - - - -3.0 - -
- - - - - - - - - -4.31 2.15 -3.89 0.18 - - 1.18 -1.41 0.42 1.32 1.13 1.83 -3.82 0.87 - 2.44 0.82 1.1 1.15 -4.72 - 0.44 -2.11 -
-8.18 -9.95 -5.83 -5.06 -4.41 -7.88 -2.34 -4.48 -3.95 -1.75 1.17 -0.09 -0.32 0.71 2.46 0.74 -0.04 1.79 1.4 0.81 1.96 -1.26 -2.81 -0.51 -0.75 1.03 1.36 -5.25 -3.15 -4.61 -5.44 -4.54 -3.35
- - - - - - - - - - 1.25 - -2.99 - 0.51 1.53 -0.63 1.17 2.75 1.32 2.77 - - -2.42 - 0.83 1.27 -0.19 -2.64 -2.79 -0.82 -0.66 -1.05
- - - - - - - - - - -2.12 -1.75 2.44 - 0.58 -0.51 -0.68 -2.67 - - -0.22 -3.68 0.46 -1.41 2.65 1.48 1.91 1.43 -1.01 -1.76 1.58 1.04 -
-7.05 -7.72 -7.3 -7.17 -6.82 -6.34 -4.74 -4.58 -4.1 -5.4 0.97 -0.19 0.02 -1.11 2.04 1.19 -0.44 0.46 0.75 0.49 0.73 1.55 -1.14 0.51 0.54 0.76 0.93 0.29 -0.97 -0.83 0.43 0.53 -1.83
-7.73 -8.4 - - - - -7.09 - - - 1.76 -3.26 0.29 -3.41 1.66 1.5 -0.1 1.16 1.56 1.36 1.61 -4.2 -0.46 -2.33 -0.11 0.75 0.69 -0.63 -0.57 -0.15 -0.28 -0.08 0.31
- - -8.24 -10.0 - - -7.74 - - - 1.96 -4.22 -0.82 -6.3 1.47 0.84 -0.35 1.68 1.39 1.33 1.66 -4.78 -1.08 -2.97 -0.09 0.98 0.98 -0.33 -0.38 -0.04 -0.07 0.11 0.62
-2.98 -2.95 -3.43 -2.93 -3.42 -3.88 -1.62 -4.4 -4.83 -2.84 0.87 -0.29 0.46 -0.6 0.98 0.64 0.21 0.51 0.49 0.66 0.68 -0.27 -0.66 -0.63 0.28 1.03 1.12 0.67 0.32 0.62 0.56 0.59 0.61
- - - - - - -7.52 -5.29 - -7.56 2.12 -3.14 0.12 -3.87 1.23 1.94 0.13 1.34 1.58 0.74 1.12 -3.72 -4.0 -1.39 -1.21 0.18 0.09 0.77 -0.02 0.05 1.09 0.54 -2.01
- - - - - - - - - - 1.27 -1.63 1.43 -2.83 1.35 -2.19 1.86 0.03 -2.13 -2.72 -0.17 0.58 -0.33 2.61 0.73 1.53 1.72 -1.78 -4.28 -2.48 -1.32 0.12 -1.06
- - - - - - -7.41 - - - 2.12 -2.75 0.78 -3.18 -1.28 1.59 -0.4 0.68 1.27 1.74 2.1 -2.23 0.63 -4.18 2.36 0.51 0.73 -1.66 - - -1.11 -4.88 -
-2.43 -0.49 -1.7 -2.78 -1.02 0.32 -1.0 -0.85 -0.43 -0.72 1.32 -0.3 -0.04 -1.36 -0.65 0.65 0.69 1.68 0.74 0.04 0.79 -1.13 -1.63 -2.27 -0.7 0.87 1.17 -1.01 -0.13 0.3 -0.05 0.05 0.06
- - - - - - - - - - 1.77 -3.12 0.64 -4.61 -0.31 1.86 -1.15 -0.08 1.33 1.75 1.38 -4.26 1.99 -4.87 1.9 1.43 1.45 -1.95 - - -3.68 -6.77 -
- - - - - - - - - - 0.17 - 2.24 - -1.03 -0.54 -1.78 -1.37 - - -0.51 -0.85 - 1.62 2.81 2.1 2.44 -0.37 - -1.45 0.23 0.96 -
-0.87 -1.14 -1.64 - -8.33 -5.06 0.94 - -6.29 - 2.49 1.49 -5.97 -2.8 -0.4 -1.57 0.27 0.58 0.89 0.24 0.58 -5.24 - -2.14 -4.85 2.38 2.86 - - - - - -
-4.37 -3.52 - -3.58 -4.32 -3.87 - -3.51 -4.66 - 1.87 -0.55 -0.39 -3.66 1.56 1.96 -0.48 -0.17 1.68 1.82 2.02 -1.55 0.98 -2.91 -2.03 0.78 0.1 -0.99 -1.18 -1.48 -1.25 -0.82 -1.57
- - - - - - - - - - 2.07 -1.82 -5.71 -2.62 -3.62 1.85 1.69 0.36 1.25 -0.67 0.91 -1.72 - - -3.59 3.16 2.55 - - - - - -3.55
- -9.49 - - - - -9.58 - - - 1.58 -3.63 0.38 -3.99 1.75 1.9 0.1 1.15 1.35 1.03 1.31 -4.39 -0.84 -4.56 0.94 0.3 0.37 0.22 -0.45 -1.04 0.53 0.87 -1.53
-7.43 -6.36 -6.27 -8.12 -5.86 -7.28 -4.73 -3.47 -3.32 -4.5 1.3 -0.09 -0.12 -0.84 2.04 1.3 -0.18 0.64 0.69 0.16 0.57 1.06 -1.46 0.43 0.53 0.95 1.22 0.18 -0.98 -0.88 0.26 0.49 -1.87
- - - - - - - - - - 1.21 - - - 0.46 2.16 -0.32 2.87 1.81 1.91 1.78 - - - - 1.9 1.21 - - - - - -
- - - - - - - - - - -0.81 0.95 1.02 - - -0.94 -1.13 - - - - 1.44 1.78 1.94 2.14 0.78 1.07 1.53 - -1.81 1.1 1.98 -
-1.46 -1.23 -4.53 -3.42 -2.61 -3.75 -2.53 -4.04 -3.73 -3.05 1.42 0.37 -1.79 0.47 1.4 0.85 -0.74 1.19 1.15 0.97 0.95 -1.3 -3.74 -2.5 -0.09 1.28 0.99 -1.0 0.7 0.08 -1.74 -0.66 1.14
- -8.55 - - - - - - - - 1.94 -2.2 0.9 -2.92 -0.29 1.33 -0.85 0.17 0.97 1.71 1.57 -2.08 1.21 -4.88 2.32 1.52 1.54 -1.8 - - -3.28 -7.78 -8.61
- - - - - - - - - - 1.41 -1.6 -1.78 - 1.69 0.28 0.45 1.71 1.95 2.41 2.28 -3.19 -1.71 - -3.14 1.68 1.52 - - - - - -
- - - - - - - - - - 1.55 - - - - - - - - - - - - - - 4.08 3.72 - - - - - -
-3.16 -2.61 -3.45 -2.93 -3.59 -4.31 -1.82 -4.05 -2.9 -1.57 2.07 -1.86 -2.28 0.03 0.35 1.12 -0.28 2.22 1.02 1.95 1.15 -1.94 - -2.85 -1.14 1.4 0.76 -3.31 -1.22 0.44 -1.13 -1.19 -0.21
- 1.15 - - -1.73 - -1.65 -0.81 - - - - -0.51 - - 1.02 0.28 0.65 -0.63 3.09 - - 0.45 - - 2.55 2.59 -1.91 -0.45 -1.6 - - -1.58
-1.3 -0.62 -3.52 -2.45 -1.83 -3.37 -2.07 -2.38 -2.41 -1.98 1.37 0.96 -1.6 0.8 1.23 0.97 -0.87 1.0 0.77 0.88 0.61 -0.67 -2.83 -1.93 -0.02 1.23 0.91 -1.26 0.31 0.08 -1.57 -0.59 0.96
-4.42 -3.96 -4.81 -4.87 -6.09 - -1.74 -2.83 -0.61 0.15 2.22 0.39 -2.83 -0.65 -2.82 -0.35 0.25 1.76 1.23 0.71 1.17 -3.77 0.21 -2.23 -5.11 1.83 2.37 -4.91 -0.07 -0.54 -3.67 -5.3 -2.78
- -4.49 -7.55 -3.45 -5.14 -3.51 -5.14 -3.28 -3.6 -1.06 1.87 -2.74 -2.06 -1.23 -1.73 -0.34 1.51 1.89 0.38 1.82 0.65 -3.45 - - -2.01 2.13 2.4 -1.37 -2.38 -1.07 -1.03 -0.0 0.04
- - - - - - - - - - 1.62 - -5.05 - 2.7 2.11 0.35 -1.89 1.72 0.58 2.02 - - - - 2.1 2.14 - - - - - -
- - - - - - - -4.68 - - 1.1 - - - -3.82 2.09 -0.12 2.06 1.73 2.74 2.11 - - - - 2.03 1.61 - - - - - -
- - - -6.61 -5.32 - - - -5.91 - 1.85 - 0.93 - -3.9 1.36 0.64 2.51 2.22 1.43 2.27 - - - 1.83 -0.33 -0.38 - -3.34 -2.94 - - -5.81
-4.04 -4.24 -4.8 -3.95 -3.42 -3.57 -2.59 -2.96 -1.48 -2.02 1.6 -1.73 -0.72 -2.21 0.3 0.46 0.43 1.26 1.67 2.22 1.63 -2.52 -2.07 -2.35 -1.5 0.36 0.69 0.29 -0.64 0.05 0.3 0.48 -0.17
-1.12 -1.8 -0.88 -1.19 -1.02 -0.52 -0.1 -0.54 -1.01 -1.16 0.19 0.21 -0.12 -0.22 0.37 -0.22 -0.47 0.78 0.34 0.0 0.7 -0.22 0.22 -1.87 0.77 0.6 0.35 -0.25 0.73 0.87 -0.22 -0.3 1.12
- - - - - - - - - - 1.97 -3.52 1.23 -6.16 -1.64 1.57 -0.74 0.94 1.46 1.39 1.71 -3.57 1.08 -4.02 2.23 0.4 0.79 0.25 - - -0.25 -3.03 -7.56

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.