Heatmap: Cluster_54 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - - - - - 0.93 0.63 -0.08 -0.16 - 3.83 -0.89 -0.09 1.26 2.13 1.23 0.07 - - -0.13 -3.19 -3.5 -2.1 - - - -1.2 -
-0.83 -3.58 -0.94 -1.82 -4.38 - -2.5 - - -6.64 0.36 -0.16 0.23 -4.61 1.18 3.16 -1.04 0.63 1.83 1.41 1.37 1.44 -3.56 -2.16 0.58 -1.82 -1.66 -2.5 -3.66 -4.34 -2.64 -2.72 -2.82
- -3.26 - - - - -4.15 - - - 0.86 -0.55 -1.89 - 2.43 3.35 -2.31 1.53 2.01 0.48 0.9 1.37 0.56 - - -6.36 -5.51 - - - - - -
- - -2.4 -1.51 -2.73 -2.04 -3.6 -2.06 -1.24 - 1.61 -0.46 -0.41 -3.58 2.09 2.17 -0.24 1.39 1.72 1.39 1.81 1.21 -0.66 - -1.09 -0.98 -1.58 -3.36 -2.57 -2.19 -3.64 -2.45 -3.95
- - - - - - -5.18 - -5.53 -3.55 1.32 2.09 -1.06 - 0.75 2.57 -2.01 2.4 1.37 1.28 1.98 1.4 -3.24 - -1.03 -3.27 -2.31 - - - - - -
-5.17 -3.74 -3.86 - -7.38 -6.93 -5.67 -2.75 -3.0 - -0.24 0.5 1.06 - 0.05 3.51 -3.83 -0.04 1.24 0.32 0.54 2.66 -3.04 -1.42 1.04 -4.28 -2.89 -4.37 -3.6 -2.45 -4.28 -4.43 -2.66
-5.06 -3.06 -5.56 - -7.86 - -4.39 -5.2 - - -0.93 0.21 0.84 - 0.12 3.15 -4.43 1.23 1.0 0.43 1.6 2.77 -1.89 -1.89 1.57 -5.27 -5.52 -5.28 -5.37 -4.67 -4.54 - -4.74
-3.24 -1.06 -3.3 -3.84 -3.84 -5.0 -3.58 -3.15 -2.92 -2.46 0.37 1.17 1.05 - -0.13 3.04 -2.97 0.01 1.01 -0.11 0.9 2.92 -4.99 -1.91 0.64 -3.16 -3.63 -2.85 -1.95 -1.76 -2.45 -3.88 -1.36
-5.22 -5.79 - - -6.23 - - -6.34 -5.03 - 0.3 1.37 -0.11 - 0.24 2.24 -1.6 1.96 2.08 1.69 3.04 0.61 -3.03 - -2.65 -5.07 -5.23 -2.68 -5.46 -6.62 -2.98 -5.06 -2.75
-6.45 -5.1 -3.93 -3.65 -3.42 -3.93 - -0.35 -2.91 -2.75 2.33 1.3 1.53 -0.54 -4.71 0.62 -0.15 0.11 1.23 -0.29 0.47 2.87 -2.84 - 2.15 -4.2 -1.68 - -5.73 -3.42 - - -4.08
-0.94 0.48 -2.08 -3.16 -2.79 -5.61 -3.04 -4.44 -1.63 -8.61 0.34 3.1 -1.58 -1.4 -0.68 2.07 -0.99 -0.07 -0.2 0.41 0.15 2.77 -4.79 -5.65 0.76 -1.52 -1.33 -5.45 -4.22 -2.13 -4.07 -4.84 -2.53
- - - - - - -6.84 - -7.82 -6.38 1.77 1.6 -0.75 -3.32 1.28 2.21 -0.49 1.53 2.03 1.48 1.71 0.86 -2.17 -7.66 0.96 -3.14 -1.3 -7.41 -3.07 -2.67 -4.28 -5.55 -2.84
-5.87 - -6.11 -2.23 -3.29 -4.16 -2.94 -3.5 -5.63 -4.56 1.1 2.95 -0.15 -1.18 1.33 1.26 -2.1 1.16 0.67 0.49 1.11 2.22 -4.11 -1.11 1.1 -1.98 -1.26 -3.37 -3.8 -3.31 -5.11 -2.75 -3.23
- - - - - - - - - - 0.45 2.09 1.62 - 1.7 2.32 -1.88 -0.1 0.8 -0.05 0.35 2.35 -1.3 - 1.92 -2.7 -1.47 -1.34 - -1.77 -2.73 -3.79 -2.7
- -4.56 - -5.86 -6.16 -5.64 -3.65 -4.77 -4.01 -4.94 1.32 0.81 0.62 -0.32 1.2 2.58 -2.12 1.42 1.82 1.01 1.34 0.03 -2.04 -2.67 1.0 -1.08 -0.55 -0.67 -1.21 -3.76 -0.6 -1.41 -2.95
-1.58 -0.68 -2.57 -4.03 -3.95 -1.89 -1.29 -2.91 -3.54 -2.69 0.96 0.18 -3.04 -0.11 -0.29 2.03 -3.76 2.17 1.51 2.23 2.07 1.5 -1.97 -1.12 -1.52 -1.62 -1.8 -3.02 -2.93 -3.4 -3.32 -2.28 -2.49
- - -4.27 - - - - - - - 1.64 1.53 0.81 - 0.16 2.97 -4.05 2.16 2.06 1.2 -0.35 -0.1 -0.87 - 0.2 -1.25 -1.85 -3.82 -0.94 -1.81 -2.25 - -
- - - - - - -5.38 -5.18 -3.6 - 1.52 -1.52 0.93 - 0.81 2.93 -0.16 0.75 2.02 1.54 0.97 0.74 -1.27 - 1.71 -1.67 -1.06 -3.03 - -5.28 -1.33 -2.72 -
- -4.54 - - - - - - - - 2.53 3.52 - - - - -2.55 -2.66 0.04 -0.3 0.58 3.37 - - -0.93 -2.12 -0.77 -2.53 - -3.7 -3.61 - -
-6.88 -4.63 -9.85 -5.62 -5.96 -5.11 -4.76 -2.44 -4.42 -1.01 1.55 1.79 0.63 -2.69 1.12 2.66 -2.04 0.73 1.53 1.19 1.16 1.39 -1.64 -4.41 0.67 -1.21 -1.11 -4.57 -3.02 -2.58 -3.1 -2.87 -2.47
- - -7.59 - - - -5.16 -8.38 - - 0.82 1.46 0.13 -3.0 1.8 2.73 -2.45 1.42 1.51 1.29 1.46 -0.01 -2.06 -0.99 1.06 -2.88 -2.35 -3.54 -1.75 -0.28 -1.79 -2.47 -1.3
-6.95 -6.66 -10.0 - - - -5.76 -7.73 -7.17 -8.31 1.0 1.48 0.77 -6.29 1.12 2.58 -1.67 0.23 1.29 0.61 1.07 2.44 -3.19 -5.81 1.85 -2.03 -1.59 -3.19 -2.24 -1.77 -4.14 -3.57 -2.2
-0.92 -2.84 -2.56 - - - 0.86 - -2.45 - -0.83 2.48 1.05 - -1.04 2.23 -2.81 2.25 0.63 -1.13 1.9 1.08 - -0.12 1.52 - -4.37 -2.36 - - - - -
-4.83 -6.51 -7.5 - -6.58 -4.89 -3.51 -3.44 -4.91 -3.88 0.47 2.93 -1.1 -3.98 0.53 2.65 -4.76 0.29 1.16 1.44 0.96 2.18 -2.13 -1.21 -0.47 -4.44 -3.41 -2.58 -3.37 -2.56 -1.53 -2.14 -2.74
- - - - - - -3.37 - - - -0.28 -0.32 1.41 - 0.5 2.96 -2.77 - 1.46 0.4 -0.05 3.41 - - 1.31 -2.5 -1.56 -1.21 - - -2.4 - -
-4.74 -2.89 - -4.46 -4.44 - -3.14 - -3.08 - 2.35 1.23 1.18 - -1.35 2.79 -2.24 -0.95 1.75 0.8 -0.38 2.64 - - 1.01 -2.32 -2.98 -4.75 -3.14 -4.8 -4.76 - -3.64
- - -4.38 - - - -2.87 -3.67 - - -0.44 2.6 1.1 - -0.34 2.99 -2.25 1.0 0.59 1.42 1.34 0.61 -0.94 -2.55 1.69 -1.8 -2.21 -3.9 - - - - -2.89
-3.52 -2.83 -4.95 -4.73 -3.68 -4.36 -2.34 -5.04 -4.07 -4.6 1.4 0.74 0.92 -2.12 1.39 2.49 -0.59 1.55 1.47 1.18 1.36 0.93 -1.76 -2.26 1.17 -2.42 -2.26 -2.45 -2.51 -1.74 -2.22 -2.21 -2.08
- -2.56 - - -5.16 - -6.48 - - - 0.02 2.49 0.44 - 0.49 2.9 -2.69 1.42 0.22 1.84 1.36 1.05 -2.73 -2.86 1.04 -0.69 -0.93 -4.91 -4.46 -3.64 -6.64 -6.45 -6.4
- -8.14 -4.58 -4.3 -4.45 -8.03 -5.69 -5.38 - -5.06 1.01 1.66 0.45 0.94 1.9 2.95 -2.93 1.24 1.16 0.54 1.23 0.79 - -1.73 -1.11 -2.36 -2.81 -2.34 -1.9 -1.59 -1.71 -2.0 -3.13
-4.6 -3.18 -7.19 -6.74 -7.62 - -0.38 - -9.99 - 0.09 2.44 0.97 0.26 1.65 1.22 -2.12 -0.58 0.68 -1.21 0.44 2.18 1.12 1.4 0.95 -1.87 -2.06 -3.25 -2.48 -2.66 -3.06 -4.61 -1.98
- - - - - - - - - - 1.24 1.57 -1.07 -1.27 1.7 2.7 -1.04 0.41 1.86 1.58 1.9 1.39 -1.86 - -0.71 -2.75 -2.01 -1.64 -2.82 -2.91 -3.24 -3.22 -2.92
-5.41 -6.72 - - -6.64 - -4.94 -6.24 -4.38 -3.26 0.91 1.37 0.04 -1.19 1.5 2.55 -1.93 1.65 1.06 1.13 1.62 0.06 -2.65 -0.53 1.25 -2.66 -3.0 -3.23 -1.22 0.03 -0.71 -1.86 -1.47
- - - - - - -0.44 - - - 1.87 1.68 -1.05 - 0.62 -0.06 -0.59 1.98 2.06 1.6 0.97 2.09 - - 1.94 - - - -0.81 - - - -
-6.13 -5.41 -7.59 -6.8 -8.5 - -2.34 - - - 1.88 0.7 0.55 -1.89 0.48 1.62 0.43 0.7 1.4 0.13 0.8 1.96 0.48 -1.73 1.71 -1.2 -0.99 -1.87 -0.88 -0.12 -1.8 -0.92 -1.16
- - - - - - - - - - 1.8 - 1.68 - - - 0.56 1.79 - - 1.12 3.24 -0.08 - 2.51 - -3.41 - -1.08 - 0.31 0.36 -
-1.59 -0.97 -3.99 -2.21 -4.88 -3.19 -1.33 -5.97 - -2.79 0.85 0.59 -3.52 -0.11 0.21 1.48 -3.14 2.18 1.88 2.31 1.97 1.57 -2.53 -1.3 -1.74 -1.68 -1.45 -2.27 -2.66 -3.49 -3.69 -1.86 -1.4
- - - - - - -2.99 - - -5.31 1.04 -2.47 -0.47 - 2.5 3.1 -1.94 1.61 1.24 0.86 0.47 -0.81 -0.69 - 0.67 -0.83 -0.99 -4.62 -0.47 0.35 -4.55 - -0.26
- - - - - - - - - - 2.4 1.16 -0.92 - - 3.21 -1.64 - 2.22 1.53 1.8 2.12 - - - - - - - - - - -
- - - - - -2.61 - - - - 2.31 1.44 -0.85 -2.45 0.4 2.54 -1.68 1.86 2.08 1.41 1.99 0.83 - - -0.44 -6.26 -8.16 - - - - - -
-1.12 -0.56 -2.21 -2.56 -3.69 - -5.31 -3.85 -4.0 -3.69 1.07 2.87 -1.21 - -0.26 2.63 -2.36 0.14 1.57 -0.4 0.54 2.38 -2.38 -5.51 -1.22 -4.13 -3.42 -5.58 -2.7 -0.31 -3.76 - -0.46
- - -7.08 - -5.05 - - - - - 1.79 1.79 -0.09 0.27 0.36 3.03 -1.71 1.22 1.7 1.01 1.39 1.19 -3.87 - 0.54 -5.44 -4.32 - - - - - -4.49
-7.29 - - -7.92 - - -6.14 - -7.62 - 1.34 1.13 0.99 - 1.62 2.19 -1.22 0.86 1.62 1.44 1.4 1.77 -2.99 -5.33 1.71 -2.34 -1.7 -4.34 -2.25 -2.78 -5.64 -4.37 -2.52
- - -3.55 - -4.46 -2.18 - -2.87 -3.43 - 0.97 -1.02 1.23 -2.02 1.07 2.62 0.25 -0.62 0.41 1.47 0.24 2.77 -2.14 - 0.72 -1.14 -0.47 -0.11 - -4.01 0.11 -4.17 -
- - - - - -5.69 -6.54 -5.01 -4.17 - 1.04 -2.1 0.54 -4.16 0.89 2.76 0.03 1.86 1.79 1.3 0.98 1.23 -1.28 -1.65 1.66 -1.81 -1.51 -1.33 -6.32 -6.48 -2.4 -1.67 -3.72
- - - - -3.67 - - -2.73 -3.81 -4.5 0.79 -0.08 0.73 -0.3 0.29 3.44 -1.91 -0.81 2.09 1.11 1.14 1.09 - -2.14 -0.26 -5.91 -4.3 0.11 -1.52 -1.32 -1.17 -2.34 -1.85
- - - -3.25 - - - -2.32 - - 2.16 0.11 0.28 - 0.53 2.51 0.97 1.52 0.33 1.62 -0.24 1.61 - - 0.76 -0.29 -0.2 -0.89 -3.66 -3.6 0.03 -1.56 -1.86
-8.24 -7.29 -9.69 - -9.61 -8.3 -6.05 -6.17 - -4.24 0.58 2.32 0.32 -3.58 0.76 2.97 -2.04 0.5 1.14 1.29 1.12 1.82 -1.64 -6.42 0.98 -1.64 -0.92 -4.51 -4.56 -3.89 -3.69 -6.19 -2.81
- - - - -7.15 - - - - - 1.54 0.23 -1.77 -1.37 2.29 2.03 -0.14 1.41 1.83 1.9 1.83 0.88 -0.82 - -0.79 -0.47 -0.86 -2.53 -3.08 -3.74 -4.2 -3.44 -3.62
- - - - - - -2.24 - - - 1.98 0.54 -1.0 -1.61 1.34 2.8 -1.38 1.02 1.84 0.79 0.43 1.86 -2.0 - -1.3 -2.01 -2.99 -1.33 -0.26 -0.55 -0.71 -0.82 -1.99
- - - - - - - - 1.55 - 3.32 2.96 - - - - - - - - - 3.62 - - - - - - - - - - -
-3.12 -3.03 -4.25 -2.22 -1.9 -1.6 -2.6 -4.22 -3.42 -3.99 0.52 2.35 -0.32 -3.56 0.25 2.08 -0.56 -0.12 0.58 -0.04 0.05 2.33 -2.1 -1.3 0.66 -1.21 -0.73 -0.22 0.05 0.37 -0.5 -0.28 -0.77
-5.63 -5.22 -7.63 -8.29 -7.75 -5.08 -4.85 -5.98 -5.0 -5.35 1.66 1.71 -0.79 -4.33 0.4 2.84 -2.44 1.37 1.73 1.37 1.31 1.33 -1.45 - 0.58 -3.45 -3.09 -3.85 -1.97 -1.36 -1.82 -2.82 -1.28
- - - - - - - - - - 1.25 0.35 -0.87 - -0.38 2.89 -2.48 1.12 0.32 -1.06 -0.74 3.53 - -3.39 1.25 -2.4 -2.7 -0.74 -2.81 -2.41 -1.29 -2.51 -4.12
-4.83 -5.47 -5.65 -4.58 -4.9 -4.33 - - - - 1.89 0.68 -1.24 -4.12 1.69 1.8 -3.36 1.28 0.52 0.59 1.72 1.97 -1.24 -1.67 0.5 -2.87 -1.91 -0.36 -0.01 -0.31 -0.92 -0.22 0.13
- - - - - - - - - - 0.12 2.47 1.7 - 0.08 2.9 -3.3 2.24 1.05 - 2.41 1.2 - - - - -3.34 - - - - - -
-1.41 -2.67 -4.02 -4.36 -5.84 -3.56 -1.57 -5.84 -3.39 - 2.0 -1.08 0.61 -2.66 -3.39 0.97 1.6 1.14 -0.49 0.68 -0.96 -0.57 2.48 -5.23 1.62 -1.43 -0.41 -1.4 -0.01 0.81 -1.95 -0.95 0.18
-5.33 -5.94 -7.28 -5.33 -5.25 -6.17 -7.19 -7.28 -9.73 -6.58 1.0 0.96 0.64 -5.23 1.61 2.77 -1.15 0.88 1.49 0.83 1.17 1.29 -2.02 -3.59 1.03 -1.93 -1.38 -0.53 -1.07 -2.18 -0.51 -0.84 -2.22
-5.95 -3.8 - -7.66 -9.68 - -1.56 -5.87 -8.34 -5.18 1.5 2.14 -0.06 1.09 1.09 2.37 -1.76 1.49 1.53 0.86 1.03 0.35 -3.37 -5.27 1.2 -1.43 -0.51 -5.08 -3.45 -3.68 -6.11 -5.29 -3.59
- - - - - - -6.28 - - - 0.38 2.66 0.15 - 1.07 2.92 -3.57 -1.59 0.6 0.46 -0.86 2.7 -1.57 -5.51 1.18 -2.41 -1.05 -1.62 -5.38 -6.21 -1.79 -2.18 -4.2
- -7.48 -6.6 -7.72 -4.11 - -3.91 - - -6.37 1.02 2.24 0.55 0.75 1.96 2.82 -3.25 1.72 1.18 0.35 1.03 0.51 -6.06 - -1.33 -3.73 -4.85 -2.83 -1.88 -1.48 -3.24 -3.19 -3.85
-3.82 -5.74 -6.06 - -7.24 - -2.64 -4.71 -4.94 -2.39 0.93 -0.48 0.65 -0.77 0.59 3.61 -1.36 -0.4 2.06 1.61 1.17 -0.09 - -2.6 -1.58 -1.48 -2.51 -0.73 -1.8 -1.52 -5.15 -3.06 -4.92
-2.96 -5.28 - -4.26 - - -4.53 - - - 2.61 3.1 -0.88 - -2.47 1.23 -4.23 -2.4 1.91 -1.18 1.46 2.82 - - -1.35 -3.71 -4.0 -2.7 - - -4.69 - -
-4.31 -7.36 - - - - -6.62 - - -3.85 1.16 2.41 -0.69 - 0.4 2.68 -3.21 -0.09 1.64 1.22 1.27 2.69 -3.68 - 0.34 -3.92 -2.63 -4.81 - - -5.78 - -5.5
-5.4 -1.94 -4.21 -2.44 -4.49 -4.46 -2.18 -4.09 -3.94 -4.17 0.42 1.33 1.32 - 0.66 3.09 -3.89 -0.11 0.79 0.48 0.1 2.43 -2.2 -1.58 1.68 -4.19 -3.85 -4.77 -2.07 -1.86 -2.77 -3.06 -1.9
- - - - - - - - - - 2.82 0.93 - - - 3.17 -0.75 2.01 - - - 3.21 - - - - -2.53 - - - - -0.09 -
-1.38 -1.5 -3.37 -3.48 -1.35 -1.05 -0.6 -2.04 -1.39 -3.05 0.95 0.81 0.18 -1.89 2.05 2.04 -0.68 -1.81 1.04 0.3 0.05 2.15 -1.84 -1.56 0.19 -0.79 -0.68 -1.04 -0.68 -0.31 -0.42 -0.29 -1.46
- - - - - - - - - - 0.8 1.9 - 0.65 1.12 2.51 -1.85 1.49 0.09 1.81 2.25 2.37 -1.17 - - - -4.32 - - - - - -
-2.19 -3.13 -3.58 -5.02 -4.82 - -3.62 -7.18 -6.23 - 1.35 -0.24 0.18 -1.16 1.0 1.86 -2.53 2.03 0.96 0.79 1.4 1.59 -2.28 -1.61 0.55 -2.31 -1.77 -0.32 -0.21 0.35 -0.39 0.04 0.03
-3.53 -2.0 -2.44 -2.43 -5.89 -3.36 -1.68 -3.63 -5.59 - 1.55 0.86 0.24 - 0.47 1.0 0.95 1.13 0.88 -0.06 0.83 1.48 0.58 -1.84 1.83 -0.99 -0.35 -1.65 -0.35 0.41 -0.44 -1.04 -0.52

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.