Heatmap: Cluster_62 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots (apex), 7 DAG
Roots (differentation zone), 4 DAP
Roots (elongation zone), 4 DAP
Roots (meristematic zone), 4 DAP
Roots (stele cells), 7 DAS
Roots (tip)
Leaves (rosette), 21 DAG
Leaves (rosette), 29 DAG
Leaves (rosette), 35 DAG
Leaves (rosette), 42 DAG
Leaves (rosette), 57 DAG
Epidermis cells
Mature guard cells
Stems (internode)
Stems (internode), senescent
Meristem (M1-3), 7-9 DAG
Meristem (M4-6), 1-12 DAG
Meristem (M7-1), 13-16 DAG
Axis of the inflorescence
Pedicel
Flowers (receptacles)
Flowers (floral buds)
Flowers (sepals)
Flowers (petals)
Flowers (stamen filaments)
Flowers (anthers)
Flowers (carpels)
Flowers (ovules)
Stigmatic tissues
Pollen
Siliques
Siliques, senescent
Pods of Siliques
Pods of Siliques, senescent
Embryo
Endosperm
Seeds, dry
Seeds, from senescent siliques
Seeds, young
Seeds, germinating
Seedlings, 5 DAG
Seedlings, 11 DAG
Seedlings, 14 DAG
Seedlings, etiolated
AT1G09155 (PP2-B15)
-1.18 1.88 -2.15 - - -8.02 -7.63 - - -9.88 - - - -3.79 -6.52 -1.0 -1.79 -4.38 -8.13 -4.55 -2.34 2.21 -0.25 3.25 3.08 2.07 -2.25 -3.04 1.98 - -0.92 -1.45 -2.66 -4.38 -4.51 1.85 -1.23 -2.16 -3.12 -2.28 -2.86 -3.81 -2.06 -1.26
AT1G18510 (TET16)
- - - - - - - - - - - -0.15 - -1.24 2.11 - - - - - - - - - 4.07 -2.7 -0.05 -0.24 - 3.06 -5.39 - - - 1.5 -2.26 2.68 - 0.77 - - - - -
-0.85 0.39 -0.94 -1.64 -5.49 -1.89 -0.84 -0.19 0.71 0.68 0.59 -3.35 -2.29 -0.25 0.58 -0.53 -0.54 -0.47 -0.96 -0.68 1.41 1.38 0.44 -0.46 1.56 0.24 -0.58 -0.47 -0.24 -4.78 0.15 -0.16 0.23 2.0 -2.08 0.6 0.21 -0.36 -0.27 -0.68 -0.91 0.04 -1.15 -0.17
-0.8 -1.56 0.92 1.65 - 1.26 -0.29 -1.68 -2.37 -1.63 -2.67 -0.83 - -0.96 -2.8 -1.82 -1.65 -0.94 -1.13 -0.8 0.47 0.99 0.37 -0.52 -0.33 0.74 0.49 -0.23 1.37 1.23 0.85 -4.71 1.65 -1.08 1.65 -0.01 -3.09 - -0.1 -1.65 0.1 0.03 1.0 -1.17
-2.2 -1.43 - - - -3.06 - -2.9 - - - 1.96 - 0.7 0.42 - -3.32 - - - -2.89 2.98 -2.26 -2.37 -0.15 2.23 -3.4 - - 3.76 -3.47 - -2.03 -2.21 -2.14 2.77 -1.77 -1.86 - -2.53 - - - -2.5
AT1G23010 (LPR1)
-2.45 0.56 -1.47 -3.06 - -2.09 -3.49 -3.23 -1.91 -1.02 -1.93 -8.87 - -3.09 -2.17 -1.19 -1.24 -1.87 -5.49 -3.81 1.91 0.79 1.74 2.43 2.06 -0.56 -0.55 0.8 -1.41 - 1.24 -1.95 -1.41 -1.62 0.54 2.32 -2.57 -2.81 2.5 -0.56 -2.59 -3.06 -2.45 -3.3
-1.14 -0.19 -0.98 -0.18 -1.37 -1.24 -0.58 -0.03 0.68 0.86 0.87 -2.88 -0.84 -1.41 0.46 -1.65 -1.81 -1.36 -0.99 -0.56 1.03 0.38 0.57 0.17 -0.27 0.02 0.0 -0.11 1.51 -2.28 -0.41 0.21 -0.16 1.16 -0.79 1.97 0.85 -0.09 -0.34 -0.4 -1.23 -0.67 -0.47 -0.78
-5.04 -3.28 -5.0 - - -7.16 -1.64 -5.41 -7.95 -8.92 -8.27 - -3.32 -1.92 -9.26 -2.81 -3.27 -3.18 -2.54 -2.09 0.43 1.2 0.6 3.02 2.85 0.21 0.58 0.43 3.55 - 0.73 - 0.23 -5.79 - -2.58 - -8.97 0.43 -2.84 -1.65 -1.98 -1.43 -0.58
- - - - - - - - -0.73 -3.1 -0.6 - - 0.17 - - - - -1.41 - 1.03 - -0.86 -1.6 0.42 -1.94 0.26 -1.42 - - 1.74 - -0.15 0.02 - 4.68 - - 0.48 -0.26 - - 0.92 -
-2.07 -1.52 -4.61 -4.02 - -4.58 0.54 -1.13 0.28 0.81 0.73 -6.25 - -1.84 0.94 -1.36 -2.48 -3.76 -3.28 -1.26 1.34 0.65 1.82 0.02 0.43 -0.83 -1.61 0.42 -2.88 -1.69 0.73 -0.58 0.66 3.0 -3.2 1.96 -1.65 -8.72 -0.52 -1.99 -1.21 0.16 0.77 -1.97
- - - - - - - - - - - - - - - - - -7.66 - -4.83 -2.21 0.6 3.19 4.76 0.46 0.57 -2.42 -4.73 1.56 - -13.46 - - - - -8.77 - - -10.68 - - - - -
-1.58 -0.89 -2.72 -4.52 0.9 -3.09 0.56 2.49 0.32 0.28 0.23 -1.11 - 0.72 2.45 -0.32 -0.46 -0.27 -0.38 -0.62 1.07 0.61 -0.98 0.18 -0.59 -2.32 -0.01 -1.5 -0.51 - 0.0 -3.48 0.31 -0.32 -2.0 -2.41 -5.96 -4.71 -1.62 -1.78 -0.76 1.22 1.52 -0.61
- - - - - - - - - - - - - - - 0.09 - -2.76 - - 0.09 - 2.1 1.81 4.77 -1.91 - - - -0.29 - - - 1.22 - - - - - -2.61 - - 1.62 -
AT1G69180 (CRC)
- -7.52 - - - - - - - - - - - - - -2.7 -2.13 0.88 - -2.63 3.78 1.21 0.37 -0.43 4.01 -2.79 2.75 -8.4 -4.05 -8.24 -6.26 -7.03 -8.14 - -1.48 -4.65 - - - -10.52 -9.41 - -8.65 -
AT1G74020 (SS2)
-0.1 1.91 0.72 -1.43 -1.8 -0.49 -2.96 -3.78 -1.29 0.07 0.39 -2.1 0.98 -5.84 -1.99 -3.43 -3.82 -3.76 -6.17 -4.42 0.43 -0.43 -0.44 -1.77 1.12 1.39 -3.56 -3.61 -4.69 -7.11 -0.01 -0.01 1.23 3.9 -5.78 -1.41 -4.31 -3.24 -3.61 -0.81 -1.42 -3.53 -1.59 0.16
AT1G77110 (PIN6)
-7.33 - - - - - -0.86 -3.85 -4.5 -7.46 -6.09 -3.77 - 1.19 -0.95 1.95 1.59 2.03 1.01 -0.55 0.98 -1.7 -0.45 -1.79 2.69 -2.5 0.71 -2.04 -4.43 -7.35 -1.31 -7.52 -2.65 - 3.62 -1.19 - -7.04 -3.25 -2.39 -1.3 -1.74 -0.88 -3.47
0.27 2.31 0.24 -1.17 -4.22 -2.07 -4.39 -0.85 -1.12 -1.0 -1.76 -3.06 -1.34 -0.38 2.73 -0.34 -1.2 -1.16 -2.12 -2.12 0.53 0.04 -0.58 -1.8 0.15 0.41 1.35 1.81 -0.73 -7.57 -1.02 -0.96 -1.09 -0.4 0.61 -3.26 -2.91 -2.39 0.74 0.76 -0.64 -2.45 -0.2 1.17
AT2G22800 (HAT9)
-0.98 1.72 -1.12 -7.07 - -8.46 -2.23 0.12 0.06 0.97 0.87 -0.88 0.53 -5.31 1.67 -0.52 -1.38 -3.17 -1.25 -1.25 0.21 1.12 0.13 -1.13 0.37 3.52 -1.32 -4.95 -0.91 - -2.89 -1.8 -3.16 1.29 -5.16 1.37 -5.31 -2.63 -5.31 -2.21 -1.76 -1.47 -0.52 -1.27
AT2G26580 (YAB5)
-5.64 - - - - - 1.16 0.59 0.35 0.06 -0.06 -3.47 -4.52 -3.13 -3.68 0.34 0.48 0.2 -2.99 -4.96 -0.09 0.89 1.69 2.72 1.78 -2.01 0.01 -3.92 -6.78 - -2.12 -3.68 -3.49 -6.75 0.76 -4.08 -7.19 -6.73 -5.74 1.42 1.57 1.59 1.89 -0.4
-1.58 0.1 -0.95 - - -3.53 -4.36 -4.69 -3.84 -4.3 -4.14 - - -0.3 2.77 -3.92 -4.74 -5.17 - -2.26 3.37 0.26 -0.0 -1.44 2.34 2.23 -0.66 1.32 1.62 - -4.95 -3.66 -5.92 0.84 -5.31 - -5.95 - -1.3 -2.1 -1.67 - -0.21 0.11
- - - - - - - - - - - - - - - - - -8.19 -2.28 -3.42 3.4 2.21 1.67 0.53 4.27 0.36 0.54 0.6 -3.5 - -4.12 - -6.77 - - -2.62 - - -4.2 - - - - -
0.02 -0.75 -0.63 1.25 - 0.03 -1.03 -0.15 -0.31 -0.22 -0.15 -1.03 1.69 0.29 1.49 -0.45 -0.3 0.39 0.27 0.04 1.62 -0.05 -0.06 -0.69 -0.03 -1.86 0.64 0.45 -0.38 -9.07 -0.49 -1.06 -0.49 -1.48 0.4 0.15 -2.12 -0.87 0.16 -0.07 -0.5 -0.82 0.16 0.08
AT2G36190 (cwINV4)
- -8.34 - - - - - - - - - - - - - - -9.68 -7.31 -6.0 -3.49 1.94 3.13 1.08 -0.22 4.42 1.6 -2.77 -1.81 -6.79 -2.85 -0.57 - -4.17 - -9.05 -1.82 -8.68 - 1.17 -8.4 - - - -11.07
AT2G39060 (SWEET9)
- - - - - - - - - - - - - - -9.24 -12.09 -11.94 -7.6 - -5.84 3.79 0.42 0.83 -0.08 4.68 -2.93 -4.12 - -7.61 -10.06 -4.33 - -6.64 - -2.49 -11.32 - - -7.88 -9.65 - - - -
AT2G47810 (NF-YB5)
0.4 4.2 1.37 - - -3.77 - - - - - - - -4.88 - -4.53 - - - - -0.11 -1.27 -1.05 -1.54 2.81 -1.16 -1.31 -0.27 -4.04 - 1.77 - 2.03 - - - - - -0.21 -0.54 -3.12 -3.89 -0.05 -1.16
AT3G10340 (PAL4)
0.03 2.73 -0.64 -4.56 - -4.18 -3.11 -5.27 -6.89 -3.93 -5.75 -5.88 - 0.22 -2.43 -3.13 -4.74 -6.2 -4.4 -3.65 -0.15 0.98 -1.2 -0.0 -1.29 3.78 -3.42 -2.89 -0.77 - 0.98 0.11 1.68 -1.86 -0.19 -2.11 0.75 -0.41 -3.84 -0.63 -0.71 -2.83 -1.04 1.25
AT3G19830 (NTMC2T5.2)
-1.02 -0.84 -1.17 -0.57 -0.0 -0.96 0.3 -1.37 0.45 0.38 0.05 -0.41 -2.15 0.65 1.32 -1.31 -0.86 -0.56 0.17 0.44 -0.08 1.13 0.38 1.11 1.58 0.36 -0.08 -0.41 0.01 -2.01 0.14 -0.37 0.47 -0.09 -0.16 -0.18 -0.48 -0.71 -0.89 -0.09 -0.65 0.27 -0.47 -0.6
-7.46 -6.05 - -5.35 - - - - - - - - - - - -11.38 - -7.07 - -4.3 3.23 2.64 1.38 0.09 4.59 -3.27 -3.69 -8.51 -6.15 -6.4 -11.07 -3.29 - - - - -6.17 -2.94 -10.9 -8.45 - - - -
- - - - - - - - - - - - - - 0.35 - - - - - -2.32 1.73 - - - 3.81 -3.89 - - 2.88 -3.7 - - - - 4.05 - - 0.2 - - - - -
-4.93 -5.55 - -5.85 - - - - -8.79 -8.59 - - - - -8.17 - -11.09 -7.55 - - 0.0 2.83 -4.5 -5.77 -1.35 4.68 -1.46 0.65 -2.08 2.36 -6.06 -2.5 -7.04 -4.29 -1.76 -2.36 -1.33 -2.46 -1.94 -0.74 -3.14 - -8.26 -3.06
AT4G00950 (MEE47)
-2.4 -4.92 -6.03 -1.79 - -3.94 -1.17 0.64 -0.25 -2.63 -1.95 - - -0.98 -3.44 -0.93 -0.79 -0.68 -0.75 -0.91 -0.59 0.69 -1.27 4.67 0.75 -1.64 -0.66 -1.21 -3.52 - -1.89 -4.82 -1.79 - -0.39 -4.19 - -6.09 -1.73 -3.12 -0.04 0.08 0.26 -2.14
-2.3 -1.48 - - - - -2.81 - - - - - - 4.16 -2.26 -1.97 -1.82 - -0.14 0.62 0.8 0.48 -0.41 -0.92 -2.84 -3.93 -1.72 - 1.69 - 2.14 - 2.35 -2.5 - -0.61 - - -2.02 -1.97 -0.64 -0.36 0.78 -3.3
- - - - - - - - - - - - - - - - - - - - -0.39 3.42 -1.09 -0.0 0.58 3.0 - - - 4.43 -5.08 - - - - - - - - - - - - -
AT4G12430 (TPPF)
-1.82 0.24 0.54 - - -8.1 -1.0 -1.2 -1.2 -1.48 -1.49 -4.12 -1.35 -1.55 -2.64 -4.06 -4.65 -6.11 -0.9 -0.35 1.51 2.05 0.71 1.73 -0.9 2.42 -0.55 -0.71 2.6 2.74 -1.32 -2.22 -1.11 -0.4 - -4.13 -1.04 -2.96 -2.03 -3.54 -1.68 -0.9 -0.86 -1.01
-2.29 -0.73 0.94 - - -3.82 - -3.69 -6.28 -6.26 -8.75 - - - - - - -6.85 - -5.07 0.3 -0.07 1.42 0.44 4.74 2.83 -5.32 -7.09 -7.15 - -7.15 - - - - -0.55 - - -4.57 -3.54 -5.76 - -5.35 -4.57
AT4G23920 (UGE2)
0.01 -0.84 -0.16 1.07 - -0.48 -0.81 -0.71 1.35 1.55 1.14 -0.69 0.68 -1.19 1.6 -0.08 -0.15 -0.51 -0.68 -0.24 0.81 -0.34 0.12 -1.56 -1.7 1.37 -0.24 0.1 -0.21 -6.46 -0.9 -0.6 -1.14 0.94 -1.07 -1.07 -0.22 -0.59 -0.71 0.12 -0.81 -0.75 -0.02 -0.72
AT4G34680 (GATA3)
-1.0 1.38 -4.11 -3.77 - -4.81 -0.78 0.35 1.69 1.27 1.13 -4.8 -0.53 -0.44 1.73 -0.34 -1.33 -2.27 -1.61 -0.83 1.71 -0.15 0.02 -1.25 0.11 0.47 0.57 -0.37 1.31 - 0.02 -2.19 0.13 -0.16 0.45 -1.01 -4.4 -3.23 0.02 0.4 -0.43 -0.95 0.35 0.08
0.45 0.66 1.46 0.21 -0.28 0.56 -0.48 -1.77 -1.48 -1.39 -0.97 -5.3 -3.06 -0.66 -0.82 0.33 0.34 0.37 -0.11 -0.22 0.18 0.43 0.16 1.63 2.08 1.02 0.29 0.57 0.53 -3.6 -0.76 -2.27 -0.86 -1.37 -0.1 -2.21 -2.59 -2.3 0.09 0.43 -0.42 -0.95 -0.78 -0.08
0.49 1.26 0.7 0.64 0.17 0.36 0.46 0.41 1.64 1.21 0.9 -3.81 - -0.53 -0.0 -0.68 -0.09 0.15 -0.3 -1.06 -1.23 0.24 -1.55 -0.37 -1.13 0.13 0.51 0.37 1.0 -7.23 -1.19 -2.23 -1.84 -1.63 0.23 -2.58 -2.33 -1.07 -0.22 -0.58 -0.45 -0.17 1.33 -0.06
0.33 2.17 -0.3 -3.06 - -3.64 0.0 -7.47 -9.01 -10.05 -9.99 -3.86 -6.65 -3.5 -9.26 -0.1 0.25 0.72 -2.32 -0.92 -1.37 0.16 -0.43 2.77 -1.09 0.71 1.56 2.67 1.0 - -1.02 -4.66 -2.47 -8.27 -0.87 -1.99 -7.83 -7.64 1.53 -0.85 -0.12 -0.53 0.7 -0.22
AT5G24150 (SQP1)
-7.02 - -7.95 - - - 2.71 -6.72 -6.87 -7.0 -8.49 -1.11 -2.6 -1.08 -2.32 -6.12 -6.19 -5.52 -1.38 1.1 2.0 1.31 1.84 -1.65 1.84 2.32 -2.36 -6.59 0.27 - 0.18 -1.32 1.27 1.95 - -5.53 -4.45 -3.68 -6.44 -0.03 -2.27 0.74 1.2 -6.88
AT5G24270 (CBL4)
-1.33 2.27 0.97 -0.09 - 0.21 -3.24 -0.36 0.73 0.79 0.44 -4.11 0.35 -2.09 -3.53 -2.34 -3.22 -4.7 -1.11 0.06 2.88 2.08 0.39 -0.22 2.22 -3.46 -0.52 -1.3 -2.23 - -6.11 -0.39 -6.29 -8.57 -3.3 -4.85 0.11 -0.27 -3.77 -0.29 -1.28 -2.07 -1.56 0.08
- - - - - - - 2.56 -1.31 - - - - -0.94 - - - - - 3.31 0.39 3.59 - - 0.66 - 0.66 0.04 1.74 - -3.94 - -3.03 0.01 - - - - -3.51 -2.63 - - 2.1 -0.63
AT5G38120 (4CL8)
- - - - - - 0.43 - -9.23 -9.32 -9.23 - - -0.16 -4.81 -5.49 -5.86 -2.59 0.59 1.25 0.28 3.34 0.47 3.61 3.39 -3.13 -0.27 -2.72 -2.26 - -1.93 - -2.79 - - -7.64 -5.23 -7.23 -2.62 - -4.61 -1.67 -5.24 -
- - - - - - 1.4 - - - - - - 0.43 - -4.81 -4.48 -1.52 0.77 2.05 -0.07 3.1 0.82 1.07 4.09 -2.17 -0.44 -1.73 - - 0.12 - -0.28 - - - - - -2.56 - - -4.2 - -6.13
AT5G40350 (MYB24)
- - - - - - - - -4.97 -5.75 -5.8 - - -8.54 -8.34 - -10.18 -7.23 - -3.04 -0.52 2.11 0.55 4.07 3.13 1.86 -2.11 -4.75 2.9 -6.74 -8.71 -5.58 -11.62 -1.44 - - - -11.22 -6.92 - - - - -
AT5G40360 (MYB115)
- - - - - - - - - - - - - - -5.06 -0.55 1.48 0.98 - - 1.11 2.77 -2.64 2.96 0.29 2.21 -5.08 - -3.06 - 1.55 - 1.06 -2.68 -0.74 3.07 - - -7.29 - - - - 0.5
AT5G44620 (CYP706A3)
-8.14 - - - - - - - - - - - - -10.54 - -1.93 -0.02 2.56 -0.74 -2.51 0.34 2.54 -1.69 -1.15 0.27 -2.61 3.21 3.41 1.48 - -2.26 -8.68 -2.78 -7.45 -7.59 -8.54 -11.03 -7.71 1.93 -8.42 -6.64 -6.98 -7.23 -7.99
- - - - - - - - - - - - - - -10.05 -5.34 -2.89 0.0 -7.88 -5.26 1.66 3.19 -1.26 -2.31 1.5 -4.96 3.22 3.36 1.76 - -3.67 -8.98 -4.44 -8.92 -7.41 -5.35 - -9.55 1.97 -9.67 - - - -
AT5G50080 (ERF110)
- - - - - -9.39 - - - - - - - -7.5 - -11.12 -8.36 -8.85 -8.44 -2.8 2.2 0.64 -0.31 1.82 0.77 -2.08 1.74 2.39 4.29 -8.35 -4.88 -5.51 -5.38 -0.89 - -0.03 -8.97 -6.27 0.73 - -9.52 - - -
2.4 1.95 0.03 -4.26 - -3.33 -2.98 -4.81 -5.69 - -4.02 - - 0.46 -2.39 2.89 2.34 -0.47 -1.74 -1.74 1.1 -2.48 -1.97 -1.7 -0.99 2.94 -2.47 -1.92 -4.89 - -3.43 -3.95 -3.41 0.59 - - - - -2.33 -2.38 -0.64 -1.03 0.92 0.46

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.