Heatmap: Cluster_251 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-3.46 - -5.71 - - - -0.43 -2.41 -3.13 - -3.41 1.49 1.25 3.07 - - -0.34 - - - -3.37 2.52 2.3 -3.56 0.82 0.33 1.83 - - - - - -
- -7.04 -9.19 - - - -7.06 - - - -6.03 1.31 -5.23 1.78 - - -2.68 - - - -6.69 2.79 2.28 3.12 -3.0 2.19 0.66 - - - - - -3.15
-6.47 -5.02 -8.76 -8.99 - - -4.9 -9.29 - -8.3 - -0.66 1.34 0.77 - - 1.41 - - - - 2.87 1.75 -2.55 2.86 1.2 1.28 -2.72 -1.54 -0.37 -2.17 -0.66 -1.18
- -2.3 - - - - 0.75 - - - - 1.42 1.73 3.15 - - -0.45 - - - - 2.08 1.5 - 2.47 -2.03 1.43 - - - - - -
-2.64 -3.7 - -0.97 -4.56 - 0.04 - - - -0.38 1.02 -0.23 0.39 - - 0.28 - -3.96 - - 3.39 0.59 -2.6 0.02 1.05 1.44 -0.65 0.66 1.0 -1.54 -5.09 1.26
-2.7 -5.8 - - -5.43 - -0.85 - - - -1.75 1.64 1.94 1.6 - -0.9 0.29 - -4.16 -4.23 - 3.22 1.1 -1.8 1.71 0.6 1.37 -4.21 -3.13 -1.56 -4.35 -4.29 -1.37
-3.82 -4.41 -5.16 -5.8 - - 0.81 - - - -1.05 1.68 0.86 2.54 -1.07 -3.36 0.06 -4.52 -1.93 -4.69 -3.66 1.78 1.21 0.51 1.62 0.77 0.38 -1.23 0.14 -0.3 -2.31 -0.99 0.49
-2.83 -3.34 -3.02 -3.7 -3.62 -3.22 -2.21 -3.47 -4.5 -3.87 -0.22 -0.07 2.23 0.58 -0.2 0.11 0.88 -0.18 -0.63 -0.39 -0.37 1.59 0.9 -0.29 2.32 0.58 1.1 -0.94 -2.21 -1.84 -0.7 -0.39 -1.44
-0.94 -1.33 -1.37 -2.18 -2.27 -1.12 -0.2 -4.27 -2.67 - 0.63 0.48 1.36 1.47 -1.06 -0.59 0.7 0.48 0.72 -0.7 -0.56 1.91 0.38 0.29 1.91 0.29 -0.02 -1.64 -1.35 -1.91 -1.5 -1.54 -1.31
-1.81 -3.63 -5.59 -5.73 -4.16 -3.24 0.03 -4.8 - - -1.08 1.22 1.25 1.65 -2.02 -0.53 0.9 -1.95 -0.6 -1.8 -2.09 2.34 1.55 0.48 0.4 0.33 1.06 -0.41 -0.45 -0.16 0.45 -0.6 -1.51
-2.9 -4.31 -0.69 -0.73 -0.53 -3.05 0.35 -2.83 -4.11 -4.34 -2.21 0.86 0.73 0.09 -3.59 -2.68 0.74 -1.93 -2.13 -3.01 -2.07 2.44 1.02 0.14 1.62 0.96 0.97 0.52 -0.83 -1.44 0.25 0.16 0.6
-5.15 - -4.01 -4.24 -5.49 -4.89 -3.0 -1.18 -2.01 -1.39 -0.3 0.19 1.83 0.55 -3.26 -1.25 1.47 -1.87 -1.41 -1.64 -1.09 2.51 -0.93 -3.3 2.97 0.67 0.96 -0.72 -4.97 -6.98 -3.55 0.29 -2.02
-3.74 -2.89 -3.14 -4.16 -5.48 - -2.09 - -4.05 -3.94 -0.12 2.25 2.05 0.82 - -5.83 1.99 - -2.53 - -3.35 1.93 -3.87 - 2.21 1.73 2.18 -6.68 - - - -5.72 -
-2.91 -2.43 -5.73 -6.85 -5.58 -6.2 0.17 -4.52 -5.04 -5.69 -2.03 1.08 0.14 1.83 -6.07 -3.35 0.19 -3.67 -4.52 -3.58 -4.55 3.26 1.12 -1.32 0.6 0.66 1.08 -1.63 0.41 0.53 -1.67 -2.39 0.95
-4.85 -4.48 -3.91 - - - -1.48 - -4.66 - 0.76 0.65 1.75 0.7 0.66 1.04 1.37 1.22 0.51 0.73 -0.03 0.95 -1.16 0.95 1.63 0.73 0.95 -2.62 -4.43 -3.05 -5.58 -2.67 -3.97
-2.62 -4.66 - - - - -0.59 - - -2.29 -4.32 0.12 1.63 1.33 -0.6 -0.28 0.4 -4.29 -1.07 -0.37 -1.72 2.41 1.03 1.07 0.76 -0.19 0.17 0.49 0.01 -0.12 0.74 0.92 -0.45
- - -3.83 -5.21 -5.43 -3.09 -3.8 -1.76 - - -2.81 1.62 0.45 1.97 -2.74 0.16 0.23 - -1.32 -1.03 -2.35 3.32 2.05 - -0.42 0.57 1.99 - - - - - -
- -0.56 - -4.94 - - - - -3.16 - - 1.23 1.76 2.93 - - 0.65 - - - - 3.05 1.85 - -1.53 -0.77 2.13 - - - - - -
-1.11 -2.93 -0.84 -0.46 -0.09 -1.4 -0.17 -0.72 -1.13 -2.43 -0.42 0.08 1.66 -0.07 0.48 -1.84 0.54 -1.12 -1.33 -2.29 -0.85 1.13 0.58 0.61 1.67 1.31 1.29 0.59 -1.97 -1.51 -0.65 -0.63 -1.82
-1.69 -0.77 -5.18 -4.05 -6.59 -3.83 -0.01 - -5.14 -5.74 -3.8 0.68 1.09 2.1 -6.89 -4.66 0.78 -5.49 -3.17 -5.18 -5.15 2.91 1.8 0.46 0.31 1.04 1.69 -4.09 -1.02 -0.74 -2.56 -2.92 -1.09
-1.2 -0.88 -1.28 -0.81 0.19 0.61 0.73 0.04 -0.64 -1.37 -2.54 1.32 1.38 0.95 -3.46 -3.39 0.23 -3.28 -4.25 -3.7 -3.96 2.19 1.47 -1.53 1.18 0.77 1.14 -3.93 -0.79 -0.64 -3.07 -5.07 -0.94
0.51 0.09 -1.83 -4.45 -3.54 -3.04 -4.69 -5.44 -2.82 - -1.04 0.26 1.93 -3.67 -1.89 -4.76 1.2 - -3.7 -1.62 -1.67 1.53 -2.29 1.51 2.97 1.82 1.78 -5.6 -6.69 -5.63 -5.76 - -4.6
-1.17 -0.18 -2.83 -2.6 -2.95 -4.15 -0.21 -4.57 -3.51 -4.91 -1.87 1.55 -0.04 1.78 -1.13 -1.3 0.72 -4.4 -2.08 -0.94 -1.28 2.49 1.97 -1.53 0.55 0.31 1.23 -0.99 -0.23 0.01 -0.71 -1.54 -0.81
-3.4 -5.02 -8.26 - - - -0.43 - -8.14 - -1.6 1.38 0.82 1.77 -0.76 -0.87 0.38 -2.86 -1.86 -0.72 -1.16 2.7 2.52 -0.65 0.05 -0.0 0.96 -1.2 -0.75 -0.36 -1.31 -1.21 -0.66
- - - - -8.87 - -5.48 - -6.43 -6.53 - 0.83 1.85 0.7 - - 2.01 - - - - 3.55 -1.79 0.19 1.78 1.17 1.54 -4.78 -5.83 -7.55 - -4.43 -4.05
-0.46 0.61 -3.1 -2.38 -5.67 - -1.23 - - - -4.41 -0.31 0.96 3.49 - -4.98 1.02 - -1.46 - - 2.89 0.85 - -2.04 -0.42 1.75 - - -5.85 - - -
-1.47 -0.63 -2.89 -5.2 -6.27 -3.66 -0.75 - -6.07 - -2.72 0.82 1.42 2.15 - - -1.33 - - - - 2.98 0.72 -4.31 2.81 0.16 2.0 - - - - - -
-3.98 -2.66 -5.35 -4.8 -5.1 -4.38 -1.26 -3.35 -6.2 -3.39 0.13 1.39 1.28 -0.0 0.15 1.0 0.11 0.04 0.46 -0.16 0.3 1.69 0.07 1.19 1.53 0.75 0.84 -1.64 -0.38 -0.62 -1.08 -1.2 -0.79
-2.49 -3.2 -2.69 -3.68 -2.32 -4.45 -2.5 -2.24 -1.82 -4.11 2.01 0.38 1.15 0.19 -1.7 1.02 0.7 0.73 0.9 -1.68 0.04 2.0 1.1 -1.65 2.29 0.19 0.55 -9.41 - - - - -4.95
-1.66 0.54 -0.03 -3.68 - -2.41 -2.75 - - - - 0.42 0.32 3.59 - - 0.52 - -2.23 - - 3.14 -1.65 -2.46 - 0.23 1.53 - - -3.2 - - -
-3.3 - - - - - 0.67 - - - 0.78 2.18 0.54 1.35 -1.58 -0.97 0.3 -1.51 -0.22 -2.68 0.26 -1.43 0.88 - 2.38 0.58 0.38 -1.72 0.42 0.87 -1.59 -1.57 1.07
-2.9 -1.96 -3.94 -5.16 -4.68 - -0.2 -3.29 -2.98 -3.05 -0.67 0.34 1.12 0.96 -1.3 0.54 0.41 -1.72 -0.27 -0.15 -0.67 2.44 0.48 0.6 1.29 -0.18 0.35 0.34 -0.48 -0.18 0.33 0.89 -1.13
- -0.18 - - - - - -2.99 - - - -0.34 -0.61 3.36 -3.14 - -0.05 - - -0.99 - 3.13 1.53 -1.59 0.85 0.15 1.66 - - - -2.42 -1.06 -
- - - - - - - - - - - 1.03 0.95 2.82 - - -0.15 - - - - 3.2 2.66 -4.85 0.42 0.01 1.66 - - - - - -
-1.37 -0.24 -1.54 -4.0 -4.06 - 1.85 - - -0.66 - 0.1 1.39 2.9 - - 0.58 -0.02 -1.24 -2.31 - 2.5 - 0.27 0.7 0.01 1.23 -2.32 -3.34 -1.76 -3.43 -4.83 -2.16
-1.89 -1.35 -2.46 -2.19 -1.88 -0.62 1.0 -1.55 -1.19 -0.93 0.34 1.69 0.53 1.96 -1.49 0.01 0.06 -0.57 0.02 -0.35 -0.2 2.12 1.35 -0.64 0.67 -0.76 -0.28 -3.17 -1.59 -0.85 -4.34 -3.36 -1.15
- - - - - - - -2.3 - - - - -1.5 0.73 - 1.27 0.39 - - - - 3.31 1.68 -0.7 0.76 1.85 1.35 -0.54 -0.76 -0.09 -1.66 -0.4 1.12
-5.02 -4.55 -8.6 -8.77 -9.76 -8.52 -5.47 -6.92 - - - 0.94 0.02 2.56 - - 0.47 - - - - 3.58 2.41 -2.85 1.12 -1.09 1.41 - - - - - -
-1.55 -3.9 -2.59 -5.39 - - -0.84 -4.54 -2.69 - - 2.61 -0.5 2.44 - - -1.26 - - - - 3.21 2.19 0.06 0.35 -0.59 0.62 -3.8 -2.41 -3.65 - -3.78 -2.08
-0.29 -0.59 -0.28 -0.73 -1.1 -0.43 0.52 -3.24 -2.11 -2.08 -1.53 1.89 0.26 2.02 -3.91 -2.45 -0.37 -2.89 -3.15 -3.67 -3.98 2.26 2.13 -1.47 1.01 0.06 0.75 -1.25 -4.28 -2.71 -1.63 -3.1 -0.23
- - - - - - - - - - -0.94 2.45 1.02 2.61 - - -0.38 - - - - 2.51 0.9 1.62 0.55 0.38 2.23 - - - - - -
0.15 -0.03 -0.68 -1.66 -5.76 - 0.03 -5.5 -6.2 -5.63 -1.64 1.36 0.66 1.67 -0.2 -1.01 0.25 -3.9 -2.81 -2.42 -2.85 0.12 0.17 0.45 2.38 0.86 0.69 -0.67 0.72 -0.35 -1.27 -0.43 0.78
-6.39 -3.97 -9.45 -9.16 -10.19 - -1.85 - - -9.6 -6.29 0.7 1.97 1.12 -8.01 -5.78 1.63 -10.75 -8.27 -9.33 -10.88 3.29 1.54 -1.26 2.15 0.71 0.96 -3.96 -2.91 -2.63 -3.43 -3.15 -3.52
-0.74 -1.42 -1.11 -1.67 -1.38 -1.5 0.4 -1.35 -1.76 -1.6 -1.68 1.41 0.91 2.27 -3.25 -1.95 0.53 -2.27 -1.86 -2.09 -1.73 2.84 1.27 -1.66 1.25 0.49 0.97 -7.47 -6.04 -8.24 -8.37 - -9.85
- -2.73 - - -4.27 - - - - - -2.06 0.22 0.64 0.23 - -2.18 0.74 - - - -2.16 3.06 1.24 -0.76 -0.47 1.55 0.96 1.17 -0.1 0.48 0.78 1.26 -0.06
- - - - - - - - - - - 2.06 0.62 3.13 - - 0.8 - - - - 3.49 -1.96 - -0.1 -1.54 2.01 - - - - - -
-3.28 -3.61 -5.95 -3.33 -4.14 -1.8 -0.98 -4.27 -1.09 -4.47 0.06 1.24 2.37 -0.2 0.13 0.37 1.35 -0.8 -0.7 0.49 -0.94 1.49 0.46 1.5 1.84 0.58 0.75 - - - - - -
- - - - - - - - - - - - 0.88 4.1 - - 0.09 - - - - 2.93 -1.41 - - -1.08 2.17 - - - - - -
-0.23 -0.02 -2.15 -2.7 -2.51 -2.03 -1.19 -1.95 -2.1 -2.0 0.21 -0.2 1.18 -0.43 -0.01 -0.24 1.03 -0.48 -0.47 -0.17 -0.22 0.9 1.36 0.52 1.22 0.6 0.92 -0.04 0.01 -0.14 0.06 -0.07 -0.79
-1.33 -1.78 -1.51 -2.2 -2.12 -2.33 -0.92 -0.6 -1.22 -1.56 -1.9 1.02 0.42 1.93 -2.61 -2.56 0.26 -2.86 -2.97 -2.66 -3.26 2.6 2.8 -2.04 0.3 0.3 0.84 -2.53 -0.93 -0.59 -2.28 -2.62 -0.69
-0.96 -0.58 -2.17 -1.86 -1.57 -0.97 0.36 -1.94 -2.36 -0.94 -0.38 0.9 0.78 0.98 -1.41 0.28 0.95 -1.63 -2.1 -1.16 -0.94 2.09 0.88 0.65 0.52 0.29 0.87 -0.33 -0.75 -0.77 0.48 -0.35 -0.93
- - - - - - - - - - - 0.36 - 1.66 - - -1.99 - - - - 1.94 1.91 3.42 -3.06 1.29 2.77 -4.02 -1.93 -4.05 -2.73 -3.92 -
- -1.12 - - - - - - - - - -0.64 - 2.54 - - -0.36 - - - - 3.63 2.18 - -1.18 1.73 2.21 - - - - - -
-0.64 -0.03 -1.23 -1.43 -1.31 -0.93 -0.28 -1.97 -2.62 -1.85 -2.56 0.73 1.28 1.39 -1.16 -0.72 0.46 -2.73 -2.51 -1.58 -1.7 2.55 2.05 -1.3 0.69 0.45 1.09 -2.8 -0.9 -1.35 -2.89 -2.27 -0.06
-1.98 -1.18 -0.32 -5.34 -0.53 -1.83 -1.69 -0.68 -0.64 - -4.6 0.68 -0.52 2.67 -0.83 -3.72 1.46 0.35 - - -3.7 2.46 1.91 - 0.49 0.03 1.71 -4.95 -2.24 - - -3.21 -2.59
- -3.35 -3.34 -1.06 -4.43 - -2.04 -0.15 -0.54 -0.93 - 0.17 2.24 0.32 - - 1.25 - - - - 3.05 - - 3.03 1.1 0.89 - - - - - -
-1.66 -1.84 -4.35 -5.83 -8.1 -4.47 -6.08 -6.56 -7.77 -3.24 -1.43 0.57 -0.31 2.26 -0.19 -1.49 1.02 -0.52 -1.52 -1.67 -1.72 3.37 1.94 -3.84 0.71 1.03 0.84 -5.14 -6.88 - - - -5.7
-0.81 -0.23 -0.93 -0.95 -0.77 -0.21 0.46 -0.4 -0.61 0.0 -0.51 0.73 0.34 1.23 -0.63 -0.3 0.4 -0.73 -0.82 -0.94 -0.75 1.53 1.38 0.01 0.24 0.22 0.34 -0.92 -0.4 -0.15 -0.89 -1.03 -0.12
- -6.76 - - - -5.09 -6.02 -4.22 - - -3.1 1.5 1.56 1.56 - - 0.9 -3.3 -3.99 - - 2.99 -4.08 -1.35 2.71 1.65 1.77 -4.89 -2.24 -4.01 - -6.12 -2.2
-1.63 -1.96 -1.82 -1.38 -1.1 -0.86 -1.74 -1.84 -0.81 -1.85 -3.72 0.45 1.2 1.88 -3.61 -3.7 0.34 - -3.65 -3.71 -3.68 2.57 2.2 -2.55 0.16 1.36 1.6 -2.76 -1.3 -0.49 -2.09 -1.33 -0.14
- - - - - - - - - - - -0.08 -3.23 3.53 - - -3.01 - - - - 3.45 - 1.33 -0.46 -0.12 2.36 - - - - - -
- -1.25 -5.02 -5.66 -4.9 - -1.08 -5.92 - - - 1.43 0.76 0.25 - - 0.01 - -5.1 - - 3.46 2.77 -2.33 0.28 1.65 1.57 - - - - - -
- - - - - - - - - - - - - 3.06 - - - - - - - 3.47 - 2.65 - 2.32 0.87 - - - - -1.08 -
- -8.66 - - - - -6.2 -6.97 - - 0.75 0.1 1.65 -1.16 -1.69 -1.89 0.81 0.76 0.72 -0.21 0.28 1.81 0.0 -0.34 2.72 1.09 1.16 -1.52 -2.08 -1.09 -1.32 -0.66 -0.85
-6.96 - - - - - -6.31 - - - 1.06 0.05 1.38 -0.17 -1.42 -2.88 0.6 0.22 1.03 0.19 0.14 1.89 -0.06 -1.95 2.72 0.82 1.07 -1.28 -2.98 -0.7 -0.82 -0.1 -0.21
-3.95 -1.25 - - -6.91 - - - - - - 1.09 0.04 2.89 - - 0.25 - - - - 3.37 2.43 - -2.1 0.44 1.77 - - - - - -
-0.65 -1.27 -1.25 -1.84 -1.18 -1.18 -0.7 1.06 -0.02 -0.13 -0.71 0.16 1.36 -0.76 -2.72 -0.56 1.12 -0.48 -1.33 -0.89 -1.02 1.06 -0.37 0.95 1.65 0.97 1.09 -0.23 -1.08 -1.51 -0.63 -0.45 -0.65
-4.31 -3.33 -4.93 -4.76 -3.49 -2.41 -0.77 -6.02 - - -1.74 1.8 1.72 2.2 -2.12 -0.35 0.91 -2.29 -1.18 -2.46 -3.65 1.75 -1.23 -0.35 2.12 0.96 0.99 -1.37 -0.15 -0.65 -0.73 -1.15 -0.73

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.