Heatmap: Cluster_187 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
1.48 1.75 0.89 0.62 1.18 0.09 2.74 -1.12 0.31 -1.96 - 2.98 -3.87 -0.81 - - -2.61 - - - - -1.24 -0.01 - 0.45 -6.48 -5.97 - - - - - -
1.34 1.01 0.59 -0.49 0.42 0.04 1.15 0.08 1.99 0.08 -1.29 1.4 -0.91 0.75 -1.88 -1.72 0.25 -2.04 -0.97 -1.13 -0.95 -0.08 -3.36 -1.19 0.55 -0.31 0.49 -1.93 -1.5 -1.16 -2.34 -3.47 -1.68
1.06 1.51 1.05 0.98 1.18 1.86 3.06 -3.31 -3.7 -4.02 - 1.74 -4.46 0.06 - - -2.3 - - - - -0.68 0.43 -1.48 -2.78 -3.74 -2.43 - -0.14 -0.3 -3.43 - -1.56
2.35 2.47 0.39 -0.3 -1.59 -0.74 1.93 0.67 3.45 -1.33 - -0.28 -0.39 - - - -2.05 - - - - - - -1.07 -1.65 - -5.53 - - - - - -
2.5 2.13 1.33 -1.83 -1.41 -1.99 2.68 1.45 2.85 - - 0.07 -2.46 - - - -2.02 - - - - -3.32 - -1.31 0.24 - -5.66 - - - - - -
0.7 1.34 0.52 0.61 0.48 1.19 3.17 0.56 0.43 1.04 -3.32 0.47 -2.95 -0.37 -3.17 -4.26 -4.68 -3.56 -6.66 - -5.7 -2.13 -1.76 -2.24 -3.43 -3.11 -3.61 -1.19 -0.18 -0.13 -1.26 -1.37 0.67
1.11 2.37 -0.61 -0.82 0.5 -4.14 2.39 0.62 2.87 0.34 - 0.92 -3.36 0.37 - - -1.47 - - - -2.88 -1.75 1.16 - -1.14 -1.69 -2.11 - -5.0 -3.42 - - -2.44
1.15 1.54 1.15 1.13 1.74 1.18 2.75 -0.67 -0.5 -1.44 -1.36 1.49 -3.49 0.43 -2.43 -0.69 -3.32 -1.23 -1.39 -1.58 -1.56 -1.66 -5.03 -2.99 -1.58 -6.93 -5.92 -5.09 -2.24 -1.2 -4.52 -4.23 -0.35
1.06 1.43 0.99 0.88 1.22 1.87 2.47 1.92 1.76 0.79 -1.6 0.33 -4.61 -0.77 -2.75 -1.88 -3.92 -1.65 -2.07 -2.62 -2.03 -3.26 -8.43 -5.14 -3.21 -5.68 -5.13 - - -10.89 - - -6.19
-0.31 -0.26 -0.26 -0.36 0.23 1.07 1.99 -0.01 -0.02 -0.42 0.58 0.58 -2.32 0.47 0.09 -0.21 -0.33 0.74 0.35 0.04 0.57 -0.72 -1.75 -1.27 -1.56 -0.52 -0.72 -0.8 -0.52 -0.54 -0.56 -0.58 -0.48
0.93 0.93 0.23 0.81 0.63 0.92 1.03 0.78 2.08 0.8 - 0.88 -0.34 -0.41 -4.11 - -0.5 - - - - 0.5 -0.33 -1.2 1.38 -0.24 0.11 -1.79 -1.22 -1.85 -2.16 -3.42 -1.07
1.8 1.86 0.62 0.61 0.68 0.25 0.59 2.12 2.67 0.41 -3.86 0.77 -2.42 -0.46 - -5.9 0.15 -5.0 -6.11 -7.27 - -0.96 -2.46 -1.86 -1.3 -1.84 -1.42 -6.02 -3.35 -2.01 -6.69 - -2.09
0.74 0.4 0.4 -0.07 -0.43 0.4 0.57 -0.58 -1.18 -1.4 -2.35 -0.73 1.11 -0.13 -2.17 -0.62 -1.85 -1.76 -2.23 -3.25 -2.61 0.8 2.23 3.09 -0.22 -1.37 -1.38 -3.54 -3.92 -4.35 -3.9 -5.31 -5.09
0.42 0.89 0.38 0.55 0.04 0.97 0.8 0.4 -0.21 1.78 -0.43 1.1 -0.84 0.43 0.03 -0.2 -2.24 0.43 -0.34 -0.06 0.37 0.15 -1.9 -0.72 -1.47 -0.75 -0.68 -1.77 -1.72 -1.86 -1.8 -1.8 -1.29
2.04 2.41 0.45 -0.02 -0.04 1.59 2.86 1.03 2.53 0.37 -4.46 -3.66 -2.59 - - -5.74 -2.52 -4.58 -4.69 -5.75 -7.72 -7.01 -4.08 - -2.81 -6.05 -5.22 -8.97 - - -8.87 - -6.64
0.94 1.27 0.31 0.49 0.32 0.86 1.42 -0.13 0.23 0.06 -1.26 0.78 -1.54 0.57 -1.0 -0.8 -0.79 -0.77 -1.49 -1.51 -1.31 0.71 1.07 -0.95 -0.74 -1.09 -0.62 -1.05 -0.87 -0.26 -0.68 -0.77 -0.33
0.3 1.91 0.44 0.97 1.1 0.56 3.06 0.79 1.19 -1.08 0.06 - -2.9 -0.81 -3.03 0.15 -2.27 - - - -3.1 -1.75 -0.35 0.13 -0.41 0.08 -0.09 - - - - - -
1.24 1.92 -0.25 0.04 0.67 -3.42 2.26 0.73 2.4 1.05 -3.06 0.6 -3.33 0.64 - -4.08 -1.13 -4.28 -5.02 -4.01 -5.05 -1.15 1.69 -6.83 -1.9 -1.29 -1.2 -9.48 -2.58 -2.41 -5.44 -8.98 -1.58
1.88 2.41 -0.43 -0.97 0.27 - 2.04 -0.05 2.26 -0.89 -4.21 0.34 -2.61 1.06 - - -0.27 - - - - -4.04 1.9 - -2.07 -0.47 -0.33 - -1.79 -2.52 - - -0.47
-5.66 -7.97 -6.69 1.41 1.37 1.57 -5.04 -1.39 1.8 -3.86 -1.33 1.42 -0.95 -1.26 -3.08 -7.25 -4.37 - -6.2 - - 1.89 -3.04 3.55 -2.49 -1.35 -2.44 -4.33 -4.52 -3.37 -4.84 -6.12 -5.12
1.56 1.65 0.4 0.15 1.03 1.51 0.4 1.71 2.95 2.69 - -2.22 - - - - -7.51 - - - - -1.99 -4.28 - -4.12 -6.87 -5.23 -6.31 -5.31 -6.51 -2.92 - -4.2
0.12 0.07 -0.45 -0.48 -0.18 0.14 2.38 1.06 0.79 0.34 -1.42 0.65 -1.37 1.4 -0.18 -0.87 -1.93 -2.57 -1.87 -0.88 -0.58 0.3 -0.81 -0.09 -0.56 -2.06 -2.4 -1.16 -0.07 0.01 -1.03 -1.73 0.83
-0.29 0.57 -0.42 -0.23 -0.34 0.23 2.73 -0.7 -0.96 -0.05 -0.29 0.7 -1.55 0.15 -0.75 -0.73 -1.49 -0.68 -0.08 -0.28 -0.28 -0.27 -2.0 -1.23 -1.37 -3.2 -2.83 -0.2 0.59 0.98 -0.23 -0.07 0.53
2.36 2.65 -1.02 -1.58 -0.94 -2.43 2.15 1.56 2.92 1.27 - -1.86 - -3.72 - - -10.76 - - - - -5.47 - - -5.49 0.23 -0.19 -5.0 -5.23 -4.94 - -4.26 -3.48
1.06 1.21 0.49 0.42 0.55 1.2 2.46 0.12 1.1 0.2 -3.4 1.73 -1.21 0.71 -3.49 -3.86 -2.96 -4.02 -4.18 -3.12 -2.81 -1.09 0.18 -2.57 0.03 -1.89 -1.77 -1.66 -1.47 -1.29 -1.98 -2.32 0.22
1.18 0.52 0.79 0.19 0.57 0.46 1.05 -0.19 0.3 -0.79 -0.82 -0.27 -0.14 -0.39 0.99 -0.35 -0.66 -0.89 -0.44 -1.32 -0.53 0.01 0.19 -0.22 -0.2 -0.77 -0.65 -0.65 -0.27 0.22 -0.16 -0.55 -0.6
1.01 1.34 0.37 0.58 0.75 1.1 -0.32 1.14 1.94 0.68 -0.28 -0.54 -1.91 -0.81 -2.13 -1.09 -0.72 -0.24 -0.4 -0.96 -0.55 -1.24 -1.61 -2.28 -0.79 -0.41 -0.31 -1.01 -0.53 -0.23 -1.08 -1.16 -0.2
0.39 1.15 -0.53 0.45 0.74 0.51 3.49 -0.31 -0.01 1.21 - 2.26 - - - - -1.34 - - -0.63 - -1.48 -0.66 -0.79 0.5 -5.17 -3.01 - - - - - -
1.08 2.2 -0.08 -0.63 -0.07 0.2 2.05 -0.28 1.5 -0.34 -5.46 1.85 -2.83 -0.1 -1.35 -2.44 -0.88 - -2.38 -4.45 -1.83 0.37 0.05 -1.43 -1.31 -0.19 -0.27 -3.17 -0.0 -0.92 -1.82 -3.07 -0.28
0.47 0.97 -0.28 -0.21 -0.47 0.06 2.2 0.07 0.38 1.99 0.81 1.34 -2.21 0.26 -1.38 0.5 -1.14 0.02 0.24 -0.37 0.28 -1.31 -0.09 -1.53 -1.87 -1.61 -2.57 -5.11 -3.54 -2.93 -5.02 -5.35 -1.31
1.07 1.41 1.31 0.98 0.69 -1.24 2.4 -1.29 1.21 -0.22 - 1.23 -2.58 - - -0.36 -3.19 - - - -3.15 0.48 1.84 0.99 -0.24 -4.76 -6.51 - -1.23 -2.62 -1.83 -1.09 -2.45
1.38 1.86 0.49 -0.09 -0.0 0.17 2.54 1.48 2.09 1.94 -5.78 1.17 -6.84 -0.03 - -5.85 -5.69 - -4.71 -7.02 -5.82 0.2 -3.32 -4.09 -4.64 -0.97 -1.59 - -6.78 - -8.02 -6.91 -6.19
0.88 0.36 0.73 0.05 0.05 0.43 1.31 -1.4 -0.59 -1.74 -0.55 -0.11 0.17 - -2.42 0.23 -0.24 -2.35 - - -3.49 1.08 0.3 3.15 -0.65 -1.92 -1.23 -2.1 -1.76 -2.11 -1.65 -2.87 0.01
2.23 1.1 -0.09 0.62 - -2.61 1.53 0.09 -3.38 - - - - - - - -2.49 - - - - - 1.95 3.94 - -5.71 -5.74 - -3.57 - - - -
0.68 0.91 -0.35 -0.21 -0.15 0.12 2.52 -0.03 0.71 0.37 -0.3 1.02 0.4 -0.34 -1.91 0.03 0.03 -0.14 -0.28 -0.63 -0.28 -1.56 0.23 -0.87 0.69 -1.05 -0.59 -6.95 -2.0 -1.06 -5.91 -8.01 -2.4
1.15 0.15 1.54 0.96 1.63 2.13 2.74 0.45 -0.92 -1.1 -5.61 0.49 -0.54 -0.16 -4.82 -3.0 -1.7 -6.75 -3.85 -4.92 -5.3 -0.4 0.87 0.05 -0.2 -3.51 -3.29 - - - - - -
1.52 1.7 0.27 0.02 0.11 0.62 1.12 0.6 1.3 0.89 -0.79 0.36 -1.24 -0.42 -2.92 -1.64 -1.0 -1.18 -1.74 -1.44 -1.7 -0.21 -0.93 -0.93 -0.11 0.28 0.11 -1.89 -1.04 -0.08 -1.53 -1.31 0.05
-0.3 -0.47 0.06 -0.04 0.51 1.19 1.5 -1.6 1.22 - -1.49 2.13 -2.49 1.64 - - -2.69 - - - -3.26 1.14 -0.78 2.68 -3.16 -1.48 -1.17 -2.7 -1.78 -2.15 -1.29 -1.32 -1.36
0.81 0.93 0.22 0.01 0.53 0.42 0.05 0.09 1.67 0.75 0.63 -1.77 -0.71 -0.95 -0.49 0.13 -0.51 0.08 0.75 0.58 -0.24 -1.26 -0.92 -0.78 -0.07 -0.68 -0.76 -1.07 -0.8 -0.3 -1.19 -1.53 -0.94
-1.04 -1.42 -0.3 -0.52 0.72 1.33 2.89 0.84 0.93 1.13 -1.94 1.91 -3.38 2.22 -2.04 -0.93 -2.45 -1.55 -1.86 -2.23 -1.87 -0.38 -1.99 -0.41 -3.27 -4.74 -4.08 -3.57 -4.58 -4.94 -3.76 -3.43 -4.54
0.91 1.64 0.52 0.35 0.67 -0.17 1.71 1.27 1.17 0.89 -0.92 -0.13 -0.19 0.47 -1.01 -3.27 -0.27 -2.63 -0.57 -1.36 -0.97 -0.22 0.53 -0.57 0.14 -0.16 -0.14 -5.84 -4.27 -4.16 -4.8 -4.74 -3.31
0.31 -0.44 0.93 0.42 0.18 -0.21 1.77 -0.01 0.8 0.01 -2.48 0.1 -0.46 -0.27 -3.08 -3.75 -1.34 -2.47 -3.11 -2.64 -3.31 0.57 0.07 1.51 -1.51 -0.66 -0.3 0.62 0.49 0.26 0.04 0.34 0.11
0.91 0.51 0.8 0.15 0.29 0.22 0.38 -0.09 0.21 -0.65 -0.52 -0.41 0.52 0.22 -0.69 -0.26 -0.61 -0.49 -0.62 -0.85 -0.62 0.25 0.56 1.07 -0.2 -0.15 -0.28 -0.4 -0.32 -0.67 -0.42 -0.72 -0.32
0.05 -0.9 -0.28 -0.36 0.42 1.15 2.72 -0.47 0.04 0.32 -1.66 0.77 -1.35 0.42 -3.49 - -3.04 -2.24 -2.93 -2.26 -2.23 0.41 -3.03 1.03 -0.64 -1.34 -1.8 -0.28 0.39 0.74 -0.34 -0.58 0.91
-0.37 -1.46 -0.77 -0.76 -0.42 1.28 1.9 -0.0 -1.12 -0.11 -2.44 0.11 -0.69 0.79 - -3.88 -2.16 - -3.82 - - 0.05 -0.01 0.54 -0.59 -0.3 -2.15 0.47 1.28 1.3 0.03 0.67 1.74
0.92 0.57 0.64 1.6 1.57 1.45 0.16 -0.54 2.53 -0.92 - -2.95 -6.46 - - - -6.99 - - - - -3.24 -5.52 3.1 -3.56 0.1 0.27 - - - - - -
1.52 1.91 0.06 0.69 0.71 1.54 1.0 0.24 0.14 -0.36 - 1.1 -1.1 1.3 - - -1.32 - - - - 1.05 1.16 -3.37 -0.89 -1.11 -0.3 -6.07 -0.96 0.39 -3.36 -3.65 -1.34
1.55 1.34 0.25 -0.05 0.32 -0.97 1.24 1.54 2.36 -0.25 -4.95 1.71 -1.03 0.69 - -6.81 0.91 - -4.64 - - 0.16 -1.92 -0.67 -0.98 -0.8 -0.51 -7.8 -2.45 -1.23 -4.6 -6.17 -0.76
1.0 1.97 -0.79 -0.06 0.59 0.24 1.67 1.58 1.13 2.11 - -3.41 -3.47 -0.94 - -2.17 -2.63 -0.24 - - -2.14 -2.64 - -0.85 -0.28 -0.95 -0.52 -0.14 0.4 -1.03 -0.07 -1.3 0.22
- - 0.34 2.82 2.92 -3.07 - -0.2 3.95 -0.67 - - - - - - - - - - - - - - - - - - - - - - -
0.85 0.78 0.9 -0.35 -2.63 -4.44 0.6 -5.16 -3.31 -5.4 -4.41 -0.61 -2.2 -0.39 -2.3 - -3.01 -4.23 -2.75 - -3.37 0.06 2.52 3.75 -2.26 -3.17 -3.22 -0.94 -1.62 -2.15 -2.08 -2.25 -1.16
1.36 1.48 0.55 0.37 -0.07 -0.44 3.02 -0.62 -1.96 -2.43 -6.23 2.56 -0.79 0.46 - -5.36 -1.77 - -4.3 - -5.33 0.14 1.02 -2.52 0.94 -1.97 -2.14 - - - - - -
1.23 0.45 0.66 0.11 0.23 0.32 0.52 -0.3 -0.26 -0.88 -0.91 -1.18 -0.02 -0.75 -0.16 -0.54 -0.72 0.04 -0.65 -1.03 -0.53 -0.4 -0.34 1.15 -0.56 -0.25 -0.33 0.51 0.29 -0.02 0.35 -0.09 0.11
1.66 1.88 0.63 1.46 1.35 1.78 0.3 1.17 2.68 0.66 -3.78 -3.82 -1.1 -0.59 - - -3.04 - - - - -0.04 -0.44 -0.7 - -2.55 -0.96 - - - - - -
1.5 1.05 -0.1 0.2 0.92 1.88 -0.93 1.76 2.9 2.92 - -4.0 - -1.86 - -5.4 -9.01 - - - - -1.68 -5.44 - - -2.55 -2.33 -6.39 -4.08 -5.29 -2.04 -3.15 -6.3
0.93 1.83 -0.48 -0.99 -0.02 -0.69 0.97 1.32 2.11 -0.05 -1.41 0.8 -3.51 0.31 - - -1.28 - -1.48 -2.22 -2.51 0.22 1.43 - -0.24 0.29 0.87 -4.56 -1.26 -0.6 -2.82 -3.48 0.33
1.28 1.32 0.74 0.55 1.12 2.38 2.88 0.22 0.49 -0.07 -6.46 0.01 -3.54 -0.76 -6.08 -3.8 -3.03 - -4.53 -4.6 -6.15 -3.26 -1.38 -5.75 -1.79 -2.8 -3.28 -1.5 0.15 -0.16 -2.02 -2.02 -0.34
1.65 1.85 0.8 0.84 1.38 -1.06 3.52 0.69 1.92 1.48 - - - - - - - - - - - -7.88 - - - - - - - - - - -
1.79 1.58 1.04 0.52 0.71 0.47 -0.04 1.04 2.81 -1.7 -4.63 -1.33 -0.18 -6.17 - - 1.02 - - - - -1.43 -3.04 -0.53 0.23 0.79 0.11 -3.61 -7.29 -4.21 -5.87 -2.54 -0.23
1.72 1.49 1.67 2.13 1.91 -2.83 1.09 1.95 3.0 0.06 - - - - - - - - - - - - -1.88 - - -3.7 -4.68 - - - - - -5.29
0.11 0.26 0.19 0.13 0.21 0.03 1.59 1.15 1.21 1.96 -0.53 0.89 -1.57 0.4 -1.23 -1.29 -1.39 -0.47 -0.84 -0.82 -0.78 -1.2 -0.76 -1.94 -0.64 -0.55 -0.76 -1.22 -0.53 -0.24 -0.74 -1.21 -0.25
2.04 2.44 0.6 0.1 1.39 0.95 1.29 0.73 2.83 1.57 - 0.6 - -2.72 - - - - - - - -3.65 - - - - -2.57 -3.65 - - - - -2.7
1.34 1.13 0.92 0.47 0.26 1.24 2.91 -0.64 -0.27 -0.04 -2.99 2.15 -1.38 1.04 -4.04 -1.4 -2.68 -2.06 -5.07 -2.38 -2.71 -1.3 -1.01 -1.68 -0.05 -1.21 -1.18 -7.36 -3.74 -4.62 -6.91 - -3.76
1.28 0.61 1.19 0.73 0.9 0.1 2.64 -0.3 1.19 -0.73 -3.37 -0.04 -0.39 -0.14 -4.34 -3.52 -1.93 -5.26 -4.37 -3.04 -2.49 0.73 -0.01 2.37 -0.91 -2.36 -2.91 - - - - - -
0.42 0.94 0.08 0.46 0.27 0.86 1.63 0.63 0.91 -0.16 0.21 0.55 -2.26 -0.97 -0.01 -0.05 -1.55 0.28 0.19 -0.43 0.01 -0.46 -1.58 -1.28 -1.45 -0.41 -0.51 -0.81 -0.2 -0.45 -1.15 -1.29 -0.32
2.09 1.42 0.97 1.27 0.63 1.23 0.13 -0.55 2.11 0.61 -6.32 -3.53 -2.73 -5.04 0.03 -5.43 -4.23 -5.11 - -9.53 -7.91 -1.97 -4.65 1.63 -4.07 -1.11 -1.71 -0.52 -0.03 0.02 -0.51 -1.28 -0.38
1.47 1.67 -0.54 0.64 0.43 1.41 0.28 1.04 2.21 1.99 - -4.57 - -1.31 - -4.65 -1.12 - -4.59 -4.65 -4.62 -1.43 0.43 0.91 - -2.06 -1.61 -0.56 -0.89 -0.62 -0.6 -1.06 -0.53
0.84 1.63 0.58 0.64 0.62 0.27 1.05 -1.14 -1.37 -1.09 -0.98 -0.06 -0.52 0.63 -2.31 -0.58 -0.09 -0.56 -0.53 -1.27 -0.88 0.46 1.55 0.61 0.12 -0.37 -0.31 -1.22 -1.06 -1.0 -1.49 -1.95 -0.73
0.92 0.52 0.5 1.53 1.04 0.69 -2.59 1.05 2.49 0.41 0.04 -0.36 -2.85 0.26 -0.16 -2.44 -0.47 -0.79 -4.06 -2.45 -1.03 -1.43 -3.02 - -3.32 -1.81 -2.03 -0.32 0.1 0.28 -0.85 -0.76 -0.13
1.14 1.5 0.39 -0.17 0.37 0.01 0.83 0.98 1.34 -0.19 -1.65 0.03 0.71 -0.8 -3.13 -3.89 -0.6 -2.92 -5.37 -4.1 -3.86 -0.61 0.29 0.09 1.58 -0.37 -0.36 -1.32 0.01 -0.2 -1.18 -1.4 0.09
-0.95 0.64 -0.5 -1.02 -0.05 0.13 2.6 0.92 1.21 2.56 -3.8 0.11 -2.78 0.31 - -0.78 -1.37 -1.03 -0.4 -2.79 0.05 - -1.23 - -1.07 -2.54 -1.65 -0.11 -0.27 -1.11 -1.73 0.14 -0.85
0.4 0.16 0.5 0.29 0.55 0.57 1.93 0.29 0.19 0.23 - -0.84 -1.52 0.77 -5.59 - -1.77 -2.93 - - - 1.66 1.87 2.84 -2.97 -2.98 -1.59 - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.