Heatmap: Cluster_217 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
1.35 0.8 -0.54 -0.08 1.11 1.14 -0.82 -1.21 -2.45 0.85 -5.35 2.24 -1.24 1.42 -3.73 - 2.62 - - - - -0.55 1.86 - -0.11 -4.26 -1.58 - - - - - -
1.68 1.61 - - -3.99 - 2.48 - - - - - - - - - -5.32 - - - - -1.43 4.3 -0.21 - -3.8 - - - - - - -
0.85 0.22 0.43 0.68 1.27 0.9 -0.93 -0.24 0.34 0.47 -5.02 0.43 -0.11 1.84 - - 1.39 -8.2 - -8.37 -9.34 -1.44 3.03 -6.94 0.44 -6.11 -1.6 - - - - - -
1.57 0.88 1.52 1.3 2.03 1.05 -0.22 0.74 1.08 0.55 -2.62 -0.2 -0.86 0.7 -1.59 -4.93 1.0 -4.76 -2.55 -3.61 -3.09 -1.31 0.91 -4.09 -0.59 -6.14 -3.78 -3.45 -1.82 -2.03 -2.04 -2.53 -0.98
1.33 0.91 -0.46 0.56 0.33 0.52 -0.59 -0.37 -0.76 0.3 -0.72 0.83 -0.07 0.73 -1.3 -0.79 0.62 -0.68 -0.46 -0.49 -0.59 -0.33 1.57 -2.4 0.3 -0.23 0.05 -1.22 -1.08 -0.71 -1.04 -0.98 -0.66
1.23 0.47 1.42 1.07 2.51 2.56 -0.59 1.61 0.95 1.48 - - -1.73 -0.13 - - 1.08 - - - - -3.05 -0.25 - -3.55 - -3.86 - - - - - -
1.5 1.51 0.34 0.67 1.09 1.42 0.27 -0.41 -0.15 -0.19 -1.7 1.39 -1.32 2.0 -2.29 -3.0 0.79 -3.84 -0.36 -2.84 -2.89 -0.29 0.92 -3.79 -0.45 -1.89 -1.32 -3.16 -2.44 -3.57 -4.19 -4.63 -0.42
1.32 0.93 -0.2 0.45 0.52 0.29 -0.37 -0.54 -0.87 -0.22 -1.04 0.92 -0.14 1.22 -0.88 -0.85 0.48 -0.38 -0.48 -0.46 -0.27 0.24 1.26 -1.8 -0.05 -0.51 -0.32 -1.19 -0.54 -0.7 -1.15 -1.21 -0.48
1.97 1.3 1.11 0.88 1.55 0.92 -1.08 -0.37 -0.28 0.07 -3.89 -0.2 0.06 1.84 - -3.47 0.83 -3.75 -3.55 -4.66 -3.32 -2.16 2.47 -5.92 -0.01 -6.04 -2.48 - - - - - -
0.94 0.51 0.13 0.32 1.22 0.86 -2.2 -1.99 -1.38 -1.64 -0.19 -0.52 1.27 1.76 -2.97 -0.6 1.56 -0.31 -1.41 -0.48 -1.45 -5.07 2.4 -4.22 1.56 - -1.65 - - - - - -
1.17 1.7 -0.39 0.89 0.49 -0.27 0.03 -1.33 -1.22 -0.47 -0.73 1.13 0.71 1.44 -5.62 -0.32 1.86 -1.3 -2.26 -2.91 -2.98 -0.71 -1.99 -1.48 1.47 -1.22 0.15 -3.13 -1.05 -1.62 -5.19 -4.22 0.12
0.77 0.92 -0.92 -0.76 -0.12 -0.6 0.51 -1.51 -1.06 -1.04 -1.32 -0.05 1.38 0.84 -0.59 -1.73 0.35 -1.86 -1.87 -1.54 -1.85 0.52 3.1 -2.06 1.03 -1.33 -0.73 -2.7 -1.81 -1.46 -2.31 -2.41 -1.83
0.81 0.38 -0.53 -0.27 0.1 -0.29 -0.32 -0.91 -1.27 -0.58 -0.72 1.43 0.33 1.73 -1.37 -0.42 0.36 -0.84 -0.54 -0.64 -0.6 0.16 1.55 -1.61 0.45 -0.92 -0.58 -0.81 -0.37 -0.14 -0.69 -0.7 -0.24
0.79 1.01 0.54 0.59 0.68 0.56 0.77 0.19 0.24 -0.28 -0.58 0.62 0.13 0.51 -0.96 -0.72 0.64 -0.71 -0.68 -0.65 -0.62 0.1 0.87 -0.48 0.38 0.03 -0.21 -1.93 -1.88 -1.84 -2.53 -2.03 -1.22
-0.09 0.34 -0.28 0.15 -0.01 0.59 1.18 0.1 0.06 0.92 -0.45 0.84 0.38 0.96 -0.99 -0.5 1.07 -0.74 -0.45 -0.35 -0.3 0.78 0.31 -0.91 0.22 0.29 0.28 -3.62 -2.97 -2.47 -3.33 -2.97 -1.44
1.63 0.73 -0.5 0.79 1.85 -0.27 0.67 -0.76 -0.42 -0.46 - -2.53 0.93 - - - 1.87 - - - - -1.98 2.3 2.24 0.97 - -2.84 - - - - - -
-0.32 0.31 -1.14 -0.98 -1.27 1.14 1.01 0.01 -0.27 1.59 -1.08 1.02 0.3 1.0 0.64 -1.0 1.12 -1.17 -1.69 -0.83 -2.33 0.85 -0.54 -3.89 -0.23 0.36 0.83 -2.46 -0.17 -0.87 -1.45 -2.08 -1.57
1.66 1.6 -0.35 0.95 0.97 0.91 -0.23 0.22 -0.62 1.04 - 2.36 -0.13 2.88 - - 0.09 - - - - -1.31 - - -0.81 - -3.07 - - - - - -
0.41 0.25 -1.31 -0.57 -0.39 -1.07 -0.88 -1.85 -2.06 -0.97 0.02 0.67 0.57 0.84 -0.09 -0.47 0.99 -0.3 0.0 -0.01 -0.05 0.45 1.81 -1.71 0.12 -0.29 -0.02 -0.63 -0.18 0.25 -0.42 -0.55 0.1
1.87 1.43 -0.26 0.27 0.42 -0.54 0.13 -1.26 -1.49 -0.28 -3.52 0.78 0.51 2.45 -7.77 -11.03 1.88 -7.7 -8.39 -7.72 -10.01 0.14 2.02 -6.2 0.98 -4.84 -2.14 -6.01 -5.66 -5.2 -5.99 -5.66 -4.89
0.38 0.15 0.03 0.04 0.12 -0.59 0.34 -0.53 -1.05 -1.34 -1.48 0.05 0.85 -0.04 -1.21 -0.48 0.5 -1.56 -1.78 -1.69 -1.71 0.44 1.52 0.16 0.57 -0.1 -0.02 0.67 0.02 -0.03 0.58 0.02 0.2
1.56 1.41 -0.16 -0.49 -0.39 -2.01 0.5 -3.86 -4.26 -6.66 -9.52 -1.05 0.68 0.35 -8.55 - 1.1 - - - - 1.07 3.75 -2.56 0.57 -4.52 -1.23 - -6.07 -5.66 -8.02 - -5.8
0.46 0.76 0.12 0.21 0.35 0.98 2.03 0.06 0.56 -0.02 -1.07 1.77 -1.22 1.12 -2.4 -0.81 0.78 -1.22 -1.31 -1.49 -1.48 0.43 -0.09 -2.7 0.65 -0.26 -0.05 -9.49 -6.13 -5.57 -8.3 - -1.03
0.69 0.11 -0.15 0.3 0.31 0.27 -0.31 -0.93 -0.99 -0.21 -1.32 1.69 -0.01 1.84 -1.4 -1.19 0.55 -1.38 -1.37 -1.26 -1.33 0.02 1.73 -2.07 0.72 -0.77 -0.42 -1.18 -0.89 -0.55 -0.87 -0.96 -0.51
0.1 -0.18 -0.77 -0.9 -0.62 -0.25 -0.1 -0.61 -0.56 -0.64 -0.48 0.01 0.07 0.69 0.26 -0.07 0.33 -0.24 -0.67 -0.41 -0.5 0.08 1.12 1.14 -0.31 -0.27 -0.27 0.36 0.17 0.23 0.2 -0.02 0.24
0.41 0.32 0.56 -0.28 -0.22 -1.48 -0.04 -2.01 -2.94 -1.8 -1.84 -0.23 0.26 -0.11 -2.11 -0.91 0.82 -0.95 -2.1 -1.48 -1.81 1.12 0.68 2.8 -0.61 0.09 0.19 -0.62 -0.49 -0.43 -0.68 -1.24 0.43
1.62 1.86 -0.4 0.44 0.91 0.88 -0.02 -0.0 0.05 0.19 -3.59 1.33 -0.12 1.94 - - 1.68 - - - - -1.0 1.45 -2.51 0.88 -5.5 -1.22 - - - -10.46 - -
0.83 0.44 -0.02 0.54 1.1 1.05 0.45 -0.01 -0.17 0.24 -4.33 1.6 0.14 1.67 -8.91 -9.0 1.53 - -10.27 -9.33 -11.3 -0.13 2.27 -4.74 0.43 -5.93 -2.02 -1.88 -3.03 -3.33 -1.68 -2.19 -3.48
1.44 1.58 -1.75 -0.42 0.06 -1.64 -0.95 -0.72 -0.55 -0.73 - -4.41 -0.13 -1.43 - - -0.03 - - - - -4.92 4.3 - -1.59 -6.1 -4.51 -7.92 - - - - -
0.08 0.14 0.36 -1.53 -5.67 -3.51 2.54 - -3.75 - - 0.1 -4.41 0.46 - - -2.09 - - - - 2.04 3.75 -1.6 0.6 -1.12 -0.65 - - - - - -
-0.01 0.02 -0.26 -0.23 0.02 0.69 0.45 -0.61 -0.16 -0.85 -0.47 0.92 0.11 0.19 0.57 -0.64 0.25 -0.53 -0.62 -0.8 -0.67 0.37 0.41 0.14 0.64 0.03 0.11 -0.41 -0.1 -0.03 -0.41 -0.54 0.04
- - - - - - 3.53 - - - - - - - - - - - - - - - 4.42 - - - - - - - - - -
1.39 0.54 0.52 0.23 0.3 -0.59 -0.29 -1.53 -2.38 -0.85 -1.34 0.75 0.75 2.07 -4.1 -4.77 1.28 -2.8 -5.71 - -4.16 -1.52 3.29 -4.61 0.49 -5.18 -2.43 - - - - - -
1.33 1.3 -0.74 -0.19 0.26 0.63 -1.05 -0.56 -0.33 -0.08 -0.76 1.44 0.76 1.55 0.1 -0.52 1.11 -1.01 -1.21 -1.43 -1.3 -1.42 1.04 -1.64 1.47 -0.07 -0.2 -10.93 -9.78 - -10.07 -8.67 -8.24
1.22 1.06 -1.3 -0.44 0.79 -0.98 0.2 0.6 0.14 0.18 -2.21 1.98 0.22 2.8 - - 1.59 - - - - -0.21 -0.87 -2.36 1.41 -3.68 -0.63 - - - - - -
0.68 1.08 0.39 0.8 0.06 -0.0 -0.03 -0.14 -0.06 0.59 -1.23 0.73 0.57 0.49 -2.87 -2.27 1.07 -1.95 -2.22 -1.66 -1.96 0.27 0.34 -0.67 0.84 -0.14 0.01 -1.29 -0.34 0.06 -1.27 -1.1 0.51
1.48 1.04 -0.63 0.44 1.39 1.46 -1.32 -0.62 -1.14 0.56 -6.86 1.59 -0.4 1.35 - - 2.41 - - - - -1.74 2.19 - 0.2 -5.47 -2.6 - - - - - -
0.7 0.2 -0.66 -2.35 -3.75 -1.85 0.82 -1.08 -1.53 -0.95 -1.87 -0.13 0.34 0.02 -2.65 -0.86 0.63 -1.32 -0.92 -1.07 -1.34 1.31 0.95 2.45 -0.3 -0.52 -0.07 -0.27 0.69 0.17 -0.46 -0.73 0.23
-0.17 -0.11 -0.36 -0.23 -0.37 0.27 0.11 0.13 -0.22 0.31 -0.28 0.04 0.53 0.19 -0.05 -0.09 0.33 -0.22 -0.37 -0.06 -0.27 0.5 0.39 -0.12 -0.23 0.05 0.21 -0.39 -0.07 0.2 -0.35 -0.3 0.18
1.14 0.1 0.66 0.65 1.72 1.62 -0.56 0.76 1.33 0.82 -3.79 0.07 0.59 2.7 -2.2 - 0.51 -1.35 -5.04 - -1.9 -0.44 -2.81 - 0.24 -8.04 -6.06 - - - - - -
0.43 0.29 0.71 1.15 0.85 0.99 0.38 0.66 1.08 0.92 -4.53 1.19 -2.73 0.58 - - 0.79 - - - - 0.25 2.75 -4.41 1.03 -5.47 -2.43 - - - - - -
1.02 1.38 -0.81 -0.04 0.18 -0.12 0.47 -0.29 -0.82 0.16 -4.0 -0.06 -0.38 1.06 - -3.83 0.12 -6.99 - -5.57 -7.13 -1.67 3.63 -0.44 0.29 -2.73 -2.18 -2.01 -4.22 -6.51 -3.1 -2.27 -2.92
2.02 1.59 -0.26 -0.22 0.63 -0.28 -0.08 -0.91 -0.69 -0.7 -1.93 0.59 -0.29 2.63 - - 1.64 -4.61 -5.71 -5.1 -5.75 0.71 1.51 -6.67 0.34 -3.39 -1.68 -3.05 -3.21 -2.19 -2.9 -2.15 -2.24
0.53 0.04 -2.6 -1.5 -0.05 -0.22 -0.28 -3.0 -2.43 -0.6 -3.18 2.04 -0.01 2.41 -2.07 -2.16 0.73 - -2.71 - - -1.47 3.49 - 0.89 -7.24 -2.88 - - - - - -
1.85 1.25 -1.51 -0.56 0.48 -1.89 0.15 -0.62 -1.68 0.16 -1.96 1.87 0.6 2.98 - - 1.44 - - - - -0.24 -1.4 -3.85 1.69 -5.72 -0.85 - - - - - -
0.65 0.91 0.02 1.0 0.7 0.97 -0.22 -0.34 -0.53 0.01 -1.88 0.1 0.95 0.72 -1.87 -1.98 1.73 -1.39 -3.1 -3.21 -2.48 0.9 0.28 -0.23 1.04 -0.36 0.21 -1.77 -2.02 -1.28 -1.71 -2.0 -0.7
1.34 0.98 0.24 0.05 0.69 0.46 -0.51 0.47 0.34 0.85 -0.66 -0.24 -0.2 0.4 -1.25 -0.62 0.88 -0.3 -0.38 -0.32 -0.66 -0.2 0.58 -1.47 -0.22 -0.16 0.09 -1.2 -1.02 -0.78 -0.79 -1.28 -1.01
1.32 1.39 -3.47 -1.62 0.53 -0.8 0.97 -3.5 -3.05 -1.18 -1.66 2.25 0.28 3.23 - - 1.25 - - - - -0.41 -0.38 - 1.39 -3.94 -0.87 - - - - - -
1.7 1.45 -0.09 0.57 0.95 1.14 -0.76 0.83 0.55 1.17 -4.09 2.17 -1.01 1.75 - - 1.28 - - - - -1.1 0.44 -3.97 -0.76 -1.5 -0.61 -9.38 -7.17 -7.55 -9.46 - -8.28
0.94 0.44 -1.17 -0.28 -0.48 -0.9 -0.44 -2.24 -2.2 -1.26 -0.13 1.15 0.6 1.29 -1.47 -0.26 0.76 -0.44 0.09 -0.23 -0.17 -0.02 2.09 -1.19 0.61 -0.27 0.03 -1.08 -1.22 -0.85 -1.17 -1.14 -0.63
1.84 1.37 0.0 0.58 1.6 0.67 -0.14 0.38 0.18 0.41 -4.28 0.05 0.03 1.84 -9.12 - 1.87 - - - - -1.38 1.76 -8.79 0.85 -8.12 -3.13 - - - - - -
1.35 0.86 -1.15 -0.23 -0.44 -1.58 0.21 -3.42 -3.14 -1.16 -4.62 1.19 0.37 2.43 - - 1.39 - - - - 0.66 3.19 -4.23 0.77 -5.59 -1.51 - - - - - -
0.31 -0.18 -0.83 -0.22 0.13 -0.33 -0.3 -1.2 -1.15 -0.64 -0.36 1.02 -0.21 1.57 -1.5 -0.71 1.04 -0.38 -0.28 -0.29 -0.26 -0.23 1.58 -2.19 0.06 -0.43 -0.12 -0.47 -0.3 -0.01 -0.34 -0.26 0.48
0.83 0.75 0.3 0.15 0.45 0.16 0.13 -0.1 -0.58 -0.31 0.07 0.41 0.6 0.07 -0.09 -0.57 0.89 -0.72 -0.47 -0.96 -0.54 0.19 1.17 -1.01 1.34 -0.32 0.03 -2.46 -1.53 -0.76 -2.48 -2.44 -0.89
0.96 0.75 0.13 0.97 0.75 1.1 -0.44 0.23 -0.13 0.96 -3.6 1.09 -0.85 2.01 -4.53 -5.53 0.37 -6.51 -5.45 -5.59 -5.7 0.51 2.13 -3.1 0.29 -0.73 -0.54 -1.6 -2.95 -3.46 -2.61 -1.77 -3.97
0.05 0.18 -0.43 -0.46 -0.41 0.45 -0.02 0.2 -0.14 0.55 -0.32 0.0 0.49 -0.25 1.05 0.08 0.49 -0.3 -0.22 -0.52 -0.3 0.1 -0.13 -0.12 -0.55 0.18 0.51 -0.56 -0.38 -0.05 -0.32 -0.53 -0.12
0.67 0.47 0.08 -0.22 -0.19 -0.16 0.73 -0.72 -1.19 -1.41 -1.41 -0.08 0.87 -0.05 -0.19 -1.0 0.39 -1.02 -1.2 -1.02 -1.19 0.37 0.65 0.56 0.76 -0.08 -0.07 0.14 0.2 0.14 -0.02 0.02 0.38
1.54 0.38 0.69 1.65 1.97 2.82 -0.45 0.97 1.33 1.49 - -1.9 -1.97 -0.54 - - 0.01 - - - - -3.94 1.21 - -1.55 -5.36 -3.62 - - - - - -
0.98 0.35 -0.41 0.63 1.51 1.73 -1.03 -0.29 -0.49 1.38 -3.59 1.58 -0.37 1.96 -2.58 -2.84 1.21 -2.69 -2.59 -2.43 -3.41 -1.25 2.0 -6.07 0.18 -5.89 -3.04 - - - - - -10.39
1.98 1.59 -0.47 0.36 1.49 2.0 -2.02 0.72 -0.67 1.96 -3.85 0.66 -2.59 1.3 - -2.42 2.19 -3.26 -3.36 -4.42 - -2.94 -0.34 - -0.92 - -3.19 - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.