Heatmap: Cluster_309 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - - - - - - 2.35 2.28 - - - - - - - - - 2.23 - 3.98 - - - - - - - 1.37
-4.13 -3.67 -6.47 -8.2 -6.58 - -3.64 -6.44 - - - 1.54 0.69 -0.18 - -3.22 -0.88 - -6.62 -5.1 - 2.34 0.93 - 4.13 0.06 -0.07 -7.67 -5.84 -6.72 - -6.41 -3.52
-1.67 -1.79 -5.32 -6.89 - - -0.98 - -2.56 - 0.21 1.49 2.0 -0.58 -1.1 -3.19 -0.13 -0.9 -2.68 -3.88 -5.17 1.59 -2.77 -2.9 3.97 -2.91 -2.1 -1.32 -4.62 - -2.25 -0.42 -
- - - - - - - - 0.11 - - 1.81 2.01 - - 2.14 -0.51 - 1.01 - - 3.32 - - 2.66 -5.13 -1.71 - - - - -2.59 -1.09
- -4.45 -6.45 - -3.21 - - - -1.88 -4.65 1.15 0.2 1.27 -1.9 -1.13 -0.98 0.35 -0.82 -0.6 -0.56 -0.64 -0.34 -1.76 - 2.82 -2.02 -1.7 0.6 1.65 1.19 0.57 1.5 0.78
-4.29 -1.52 -4.11 - - - 0.22 - -4.09 - -0.84 0.23 0.78 -0.25 -1.35 - 2.92 -3.08 -2.38 -3.25 -2.05 -2.23 -1.82 -4.41 3.13 0.77 2.37 -3.75 -2.06 -0.93 -2.93 -2.03 0.06
-1.88 -3.47 -2.57 -2.43 -0.88 -1.18 -0.3 -2.54 -2.08 -7.42 0.21 1.76 1.65 0.53 1.35 -0.66 0.6 -1.48 -0.08 -0.85 0.07 -0.06 1.4 -1.88 2.9 -0.14 0.14 - - -6.76 - - -5.46
- - - - - - - - - - - - 1.88 - - 1.87 -0.21 - - - - 2.5 2.84 - 3.58 - - - - - - - -
- - - - -5.24 - - -3.78 - - 0.71 -0.35 2.43 -2.93 -2.93 0.89 -0.3 - 0.04 -1.02 -1.41 1.71 0.65 - 3.93 -4.46 -3.51 - - - - - -3.83
-1.9 -3.71 - - - - 0.33 - - - -0.75 0.45 1.82 -1.54 0.27 0.96 -0.04 -0.47 -1.25 -0.83 -0.28 1.39 0.59 -3.79 2.63 0.24 0.96 -0.8 0.08 -0.89 0.9 -0.05 -1.31
0.57 0.82 -2.49 - - - 0.19 - - - -0.65 0.8 1.07 1.37 -3.58 0.97 -0.06 -3.51 -0.8 -0.68 -3.65 2.64 1.2 -0.51 1.58 -0.09 0.46 -2.44 -0.81 -2.28 -0.37 -1.1 -1.98
-0.68 -1.37 -0.88 -1.03 -0.96 -1.2 -0.36 -2.89 -2.57 -3.8 -0.45 2.04 0.71 -1.61 0.34 0.9 -0.78 -1.75 -0.7 -1.57 -0.58 2.26 -0.31 -0.2 2.25 -0.51 -0.55 0.28 -2.06 -1.54 -0.85 -0.3 -0.57
-0.45 -1.32 -2.37 -1.48 -4.11 -3.8 0.6 -0.32 -2.58 -2.73 -3.02 2.84 1.62 -0.71 - - -1.34 - -4.65 -1.91 -3.1 2.6 -3.16 -4.87 3.09 -1.22 -1.24 -3.38 -1.19 -2.33 -4.65 -4.71 -1.49
- -5.29 -4.66 -4.74 -3.52 - -3.27 -4.39 - - -5.5 1.68 0.78 -0.11 - - -0.22 - - - - 3.3 -2.34 -4.79 3.82 -0.51 0.01 - - - - - -6.52
-0.29 -2.02 -0.14 0.12 -2.9 -5.08 1.35 -1.68 -1.32 -2.36 -4.3 1.19 1.4 - -1.59 - 1.74 - - - -2.66 1.62 1.19 - 3.34 -2.06 -0.7 -3.08 -4.35 -1.06 -3.2 -3.61 -1.5
-1.12 0.05 -2.73 -4.18 -7.29 - -1.44 -2.82 -4.38 -5.02 -0.54 0.22 2.07 -0.23 -1.17 1.84 -1.43 -1.59 -0.55 -0.12 -0.8 2.39 -0.4 -2.06 3.02 -1.08 -0.27 -3.75 -2.13 -3.02 -1.32 -1.96 -2.63
- - - - - - - -0.06 - - - - - 0.71 - - -0.7 - - - - 3.48 0.59 - 3.92 - 0.3 - - - - - -0.27
- - - - - - - - - - - 1.07 1.34 -0.03 - - -1.9 - - - - 2.52 - - 4.42 - -5.86 - - - - - -
- - -3.33 -0.95 - - -0.53 - -1.62 - - 2.45 0.71 0.53 - - -1.62 - - - - 2.57 - - 4.05 -4.82 - - - - - - -
- - -6.18 - -4.4 -2.91 - -1.78 -2.77 - -4.2 0.76 1.24 - -1.4 0.87 -3.64 -1.17 -2.13 -1.11 -1.3 2.38 1.36 -0.55 3.63 0.69 0.6 -4.1 -6.22 -6.1 -2.7 -2.49 -6.07
- - -4.72 -5.99 -5.97 - -5.22 - -5.2 - - 1.19 0.63 -2.87 - - -0.41 - - - - 2.99 -1.0 0.14 4.18 -3.17 -1.27 - - - - - -
- -2.7 - -5.74 -1.83 - -3.85 -1.21 -2.3 -1.41 0.23 2.59 2.12 0.85 -0.72 0.39 0.66 0.82 -0.8 -0.36 -0.89 0.15 -0.73 -0.43 2.95 -1.71 -1.31 -4.51 -4.82 -5.56 - - -
- -2.06 - - - - - - - - - -1.49 1.86 -0.26 - - 0.18 - - - - 2.08 3.32 - 3.43 -3.58 0.82 - - - - - -
-0.3 0.64 -2.17 -4.99 - - -0.03 -3.08 - -5.31 -1.05 0.49 0.69 0.84 -1.88 0.91 0.28 -0.13 -0.54 -1.3 -2.27 2.31 0.13 -2.14 1.94 -0.14 0.96 -1.06 -0.13 -0.39 0.92 -0.39 -0.69
-0.67 - - - -4.49 -3.45 - - - - 0.13 2.61 -1.03 2.93 - 1.56 -1.5 -2.25 1.03 0.72 -0.03 0.45 - 0.29 2.36 -1.18 -0.73 - - - - - -
- - - - - - 0.9 - - - - 1.92 2.58 0.76 0.76 - -0.52 - - - - 0.99 0.64 - 3.7 - -1.94 - - - - - -1.23
-8.76 - - - -8.95 - -5.91 -5.45 - -0.93 -0.68 2.47 2.11 0.08 1.05 1.37 -0.06 0.48 0.09 -1.07 -0.06 0.09 0.87 -5.13 2.57 0.32 0.35 - - - - - -9.67
- - -11.09 - - - -7.57 -8.19 -8.07 - 0.89 -0.5 0.34 -1.93 -0.92 0.05 0.32 -0.03 0.26 -0.71 0.37 0.04 -0.53 -4.37 3.24 0.03 -0.16 -0.3 0.9 1.49 -0.74 0.12 0.78
-0.28 -0.07 -1.8 -1.9 -1.52 -0.9 -1.33 -0.74 -2.02 -1.3 0.59 0.78 0.96 -2.3 1.1 0.98 0.21 0.28 0.79 -0.07 -0.03 0.29 -0.68 -5.68 2.24 -0.34 -0.13 -2.5 0.46 0.36 -2.92 -1.76 0.08
- - -4.98 - - - - -0.68 -1.65 - - 2.92 0.3 - -1.45 -0.37 0.47 - - - - 3.13 - - 3.22 -0.81 1.04 -4.53 - - - - -
- - - - - - - - - - - -1.79 0.31 - - - 2.75 - - - - -0.23 0.25 - 4.23 -2.08 1.88 - - - - - -
- - - - - - - - - - - 0.45 0.78 - - - -1.28 - - - - 3.32 - -1.79 4.23 -3.63 -1.68 - - - - - -
- - - - - - - - - - - - 3.08 - - - 1.17 - - - - - - - 3.52 -0.4 - - 2.82 1.62 - - -
- - - -7.02 -5.09 - -3.09 -4.08 -5.43 - -2.87 2.08 2.74 -1.64 -1.32 0.21 -1.58 -1.83 -2.09 -1.24 -5.29 2.56 -3.77 -1.16 3.27 0.11 -0.01 -3.09 - - -2.66 -3.24 -
- - - - - - - - - - 1.68 - 2.09 - - 0.09 -1.51 1.57 0.14 - - 1.24 - - 4.07 -1.91 -0.67 - - - - - -
- - - - - -7.21 -8.06 -6.26 -8.01 -5.78 -0.3 2.57 -0.04 2.35 -3.3 -1.92 -0.81 -2.47 -3.12 -1.57 -2.25 -0.97 -7.12 2.04 3.73 -2.17 -2.63 - -8.02 -3.81 - - -6.94
- -4.46 -4.51 - - - 1.2 - - - - 2.05 0.46 0.01 - -2.47 -0.36 - - -0.39 - 2.95 -0.42 1.88 3.1 -1.06 0.15 - - - - - -
-5.36 -6.04 -6.1 -7.34 -7.45 -7.59 -4.47 -7.52 -8.1 -7.23 -0.27 0.27 0.84 0.27 -2.3 0.01 1.26 -0.05 0.16 -0.29 -0.02 0.86 0.39 -1.7 2.83 -1.19 -1.18 0.85 0.21 0.63 0.49 0.59 0.59
- - - - - - - - - - - -0.47 1.63 - - - -1.4 - - - - 0.19 - - 4.79 -3.69 - - - - - - -
-0.51 -2.82 -1.32 - -3.22 - -2.04 - -1.75 0.42 - -2.61 2.14 -2.6 - - 2.84 - - - - -0.98 1.52 - 3.08 0.36 2.07 - - -0.85 - - -
-4.44 -4.95 - - -4.74 -2.92 - - - - -3.76 0.37 2.63 - -2.03 -3.82 -1.17 - 0.14 - - -0.94 2.57 0.22 3.79 -2.79 -2.11 - - - - - 0.53
- - - - - - - - - - - - - - - - 0.99 - - - - - - - 4.95 - - - - - - - -
- - - - - - - - - - - -1.6 1.05 -1.59 - - 1.98 -2.52 - - - 0.19 -1.72 1.36 4.13 -1.54 0.14 - -1.47 -1.44 - - 1.32
- - - - - - - -5.18 - - - -3.92 0.69 - - - 2.06 - - - - -3.15 2.45 -6.17 4.19 -2.67 1.68 - - - - - -
-6.91 -5.81 -4.37 -3.89 -3.75 -3.02 -3.24 -7.06 - -0.38 -2.3 2.47 2.24 - 0.48 -2.97 -1.52 -0.43 -1.59 -1.98 -1.81 1.34 -0.18 -0.5 3.58 -0.81 -0.78 -2.25 -4.02 -4.6 -3.59 - -2.46
-1.77 -4.17 - - - -2.46 -3.31 - - - - 3.19 -3.31 2.18 - - -0.79 - - - - -0.46 - 0.5 3.99 -5.51 -3.75 - - - - - -
- - - - - - - - - - - 3.01 - -0.44 - - -1.31 - - - - 1.3 0.44 0.89 4.18 - - - - - - - -
-7.22 -7.82 -7.72 -6.94 -6.81 -6.28 -4.17 -5.43 -7.16 -7.25 0.6 -3.16 3.25 - -0.94 0.68 0.68 0.45 -0.3 -0.24 -0.85 -0.95 - - 3.66 -1.65 -1.59 -6.08 -2.07 -2.48 -4.97 -4.06 -4.52
- -5.43 - - - - -0.68 - -5.66 - -3.12 2.75 -0.52 2.26 - -5.34 -0.48 -2.0 -4.28 -3.34 -3.73 2.04 1.71 0.17 3.24 -1.46 -1.39 -4.57 -6.37 - -5.34 -6.28 -4.64
- - - - - - - - - - - - 2.07 - - - - - - - - - 3.03 - 4.36 - - - - - - - -
- -3.22 - -2.99 - -1.5 -0.74 -1.15 - - -0.26 2.4 0.43 -1.29 - - 0.93 - - - -1.36 1.23 -1.42 -1.55 3.95 -0.34 -1.85 - -2.31 0.22 - - -2.28
- - - - - - - -4.36 -3.51 -3.94 - - 2.23 - - - 2.04 -0.11 - - - - 0.83 -0.76 4.19 - - -0.55 0.42 -4.47 -2.08 -2.43 -4.49
- -2.95 -4.26 - -5.07 - - - - - - -1.15 1.59 - - - 1.84 - - - - -1.67 2.19 1.77 3.83 -1.62 0.8 - -1.12 -2.14 - - -1.08
- - - -3.32 - - - - -2.53 - - -1.53 0.22 - - - 1.75 - - - - -0.0 1.81 1.39 4.13 -2.26 1.53 - - - -2.39 - -
- - - - - - -2.08 -0.83 - - - 1.35 1.89 - 1.6 - -0.68 - - - - 2.57 - 0.27 3.62 0.99 -0.19 - - - - - -
- - - - - - - - - - -0.77 2.2 2.06 -0.19 -0.98 0.05 0.79 -1.32 -1.05 -1.24 -1.04 1.41 1.1 -2.49 3.65 -4.06 -2.9 - - - - - -
- - - - - - - - - - 1.73 -4.42 -0.13 - -4.41 -1.3 0.94 0.2 1.78 0.26 1.66 -3.55 0.63 - 2.88 -1.02 0.43 -0.53 -0.41 0.71 0.06 -1.24 1.04
- - - - - - - - - - - 2.89 -1.07 2.34 - - -1.14 - - - - 1.6 0.9 -0.24 3.79 - -4.9 - - - - - -
-1.23 -1.56 -2.11 -2.39 -2.14 - - -1.19 -0.16 1.08 -3.4 2.58 1.12 1.38 - - -0.62 - - - - 0.49 0.72 -0.41 3.6 -1.49 -1.51 - - - - - -
- - - - -2.39 - - - - - - 0.57 2.34 - - - 1.02 - - - - -0.49 0.85 2.47 3.95 - -1.9 - - - - - -1.06
- - -3.03 - -4.15 -2.45 - - - - -0.85 3.08 0.31 2.09 - - -0.07 - -0.68 -2.33 -3.44 0.47 0.37 - 3.76 - - - - - - -3.27 -
- - -5.96 - - - - -5.25 - - 0.18 -4.4 2.81 - -0.02 0.65 0.67 -0.15 0.04 0.12 0.37 -1.43 - - 3.9 -5.44 -4.47 -2.67 -3.22 -1.8 -1.52 -3.68 -5.38
- - - - - - - - - - 0.53 1.35 2.14 - -0.87 1.63 -0.59 - -0.31 0.26 1.44 1.53 -1.58 -2.12 2.87 0.57 1.02 -1.74 -4.47 - -0.96 -2.83 -1.59
-2.96 -2.85 -7.04 -9.3 -6.98 - -1.74 - -8.51 - -1.0 2.24 0.8 2.69 -4.7 0.13 -2.74 -0.77 -2.0 -1.22 -1.49 0.97 0.64 1.36 3.11 -0.68 -0.82 - - - -7.38 -6.47 -2.6
- - -3.05 - -3.69 - 0.92 - - - -2.03 2.5 0.68 1.14 0.08 1.06 0.13 - 0.72 -0.02 -0.99 1.77 0.63 - 2.98 -2.05 -2.28 -2.0 - -3.25 - -2.34 -
-1.93 -4.73 -3.57 -3.83 - - -3.46 -6.9 - - -1.87 1.7 2.09 -2.88 0.82 0.8 0.64 -4.05 -0.3 -1.2 -1.87 2.62 0.9 -2.06 2.98 -2.8 -1.41 -1.55 -2.68 -3.75 -1.36 -2.45 -3.16
- - - - - - -3.65 -3.44 - - 1.4 1.21 2.24 - -0.59 2.08 -1.92 -2.51 0.38 0.32 0.81 1.93 - - 3.09 -3.96 -1.08 -3.52 -3.71 - -1.59 -2.68 -
- - - - -3.59 - - - - - 1.06 1.55 2.02 - 1.95 0.94 - - -0.17 - -1.21 2.92 - - 2.94 -1.96 -0.97 -2.46 -1.98 - -2.24 -2.97 -
- - - - - - - - - - - - - - - - 0.63 - - - - - - - 4.98 - - - - - - - -
-2.42 -1.21 -1.31 -1.69 -3.15 -1.44 -3.14 -1.89 -2.63 -1.12 1.16 -2.7 1.67 -1.45 -0.28 0.07 0.6 0.33 0.96 0.48 1.57 -1.79 - - 3.7 - - - - - - - -
- - - - - - - - - - - - - - - - -0.01 - - - - 3.43 - - 4.41 - - - - - - - -
-6.32 -5.35 -5.84 -4.17 -5.56 -7.31 -5.58 -5.62 -4.2 -4.04 -9.14 -0.36 0.57 -2.36 - - 2.18 - - - - 1.78 1.81 1.06 3.72 -1.09 1.58 -9.65 -5.68 -4.5 -6.35 -11.07 -6.22
- - - - -3.83 - - - - - 0.4 2.6 0.13 - - - 2.22 - - - -0.54 1.53 - - 3.68 -1.81 -1.25 - -1.54 -2.57 - - 1.1
- - - -3.47 - - - -5.36 - - -3.55 2.87 0.81 1.8 - - 0.01 - - - - 2.35 0.68 -0.24 3.55 - -4.88 - - - - - -
- - - - - - - - - - - - 1.57 - - - -0.15 - - - - - - - 4.86 - - - - - - - -
-3.74 -2.15 - - - - -2.72 - - - 1.06 1.33 1.34 - 1.58 -1.75 -0.8 0.73 - -0.44 -1.73 1.45 -2.79 -2.92 3.83 -2.11 -2.79 -2.6 -1.76 -2.21 -2.88 -2.76 -1.63
-2.54 -3.11 -2.05 -2.27 -1.04 -1.54 0.32 -3.55 -3.5 -3.95 0.44 1.8 2.12 0.95 0.4 0.24 0.18 -0.51 -0.02 -0.49 -0.33 0.11 1.35 -1.57 2.83 -1.46 -0.99 -9.53 -6.0 -7.89 - - -6.14
- - - - - - - - - - - 0.23 0.83 - - - 0.23 - - - - 2.49 - - 4.03 -2.91 -1.94 -0.74 0.49 0.58 -2.86 0.25 0.76
- - - - - - - - - - - -0.35 0.61 -1.22 - - 0.48 - - - - 2.44 - - 4.43 -3.87 -2.06 -1.54 -0.82 -2.34 - -2.96 -1.44
- - - - - - -4.71 - - - - -2.11 1.21 -0.37 0.12 -5.36 1.46 -3.2 - - - -0.43 -0.35 1.39 2.7 -0.21 0.34 1.44 1.04 1.0 2.02 -0.66 0.51
-5.69 -4.56 -3.37 0.05 -0.39 0.9 -0.57 - - - - 1.4 2.6 - - - 0.96 -5.54 -4.65 -4.71 - -3.45 2.52 0.2 2.96 -2.49 -1.39 -3.77 -0.76 -0.72 -2.99 -3.1 -0.05
-3.46 -6.83 -2.32 -0.75 0.08 -0.21 -1.54 -4.3 -3.64 -5.13 -0.18 0.02 1.6 -0.57 - - 0.35 - - - - 2.77 0.19 - 3.77 -1.6 -0.23 - - - -5.25 - -
-2.63 -0.2 - - - - -2.98 - - - -2.29 -0.71 2.34 - -0.7 -2.01 -1.18 - -0.73 -1.28 - -0.98 2.41 -2.18 3.81 -1.99 -1.11 -1.38 - - 1.24 - -2.89
- - - - - - - - - - 1.32 -5.66 2.48 - -0.72 1.29 1.55 0.98 0.94 -0.02 0.16 - -4.77 - 3.65 -5.44 -2.73 -4.48 -5.77 -5.69 -6.74 -4.74 -4.59
-4.36 - - - -6.18 - - - -1.88 - -2.38 1.03 1.88 -0.01 - - 1.5 -2.47 - - - 0.7 -0.6 1.77 3.88 -2.11 -1.37 - -1.06 -2.73 - - 0.08
- - - - - - - - - - -1.4 -2.25 0.58 -0.44 0.21 1.36 -1.81 1.58 - - -0.99 1.04 0.72 - 4.24 -4.09 -6.58 - - - - - -
- - - - - - -1.29 -5.91 -4.98 - -3.7 3.13 2.21 -0.35 - - 1.26 - - - - 1.14 -5.18 -0.99 3.68 -4.06 -1.7 - - - - - -
- - - - - -0.35 - - - - - 1.95 0.71 - - - 0.31 - - - - 0.38 2.66 - 4.07 -4.24 -0.02 - - - - - -
- -6.87 -5.73 -4.53 - - - - -5.61 - -1.8 0.92 1.33 0.04 - - 1.75 -3.13 - - -3.27 0.48 0.07 1.71 3.88 -2.03 -0.56 - -1.15 -1.89 - - 0.57
-1.34 -4.87 - - -2.28 -3.28 - -1.6 -1.51 - -0.0 2.92 1.46 -1.48 2.25 -3.16 -0.45 - - - - 2.35 -0.38 -1.74 2.52 -1.59 -0.98 -1.58 -2.61 - -0.95 -3.89 -1.23
- - - - - - - - - - - 3.02 3.53 - - - 2.3 - - - - - - - 3.07 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.