Heatmap: Cluster_30 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-2.32 -3.24 -2.5 -3.09 -1.9 -2.12 -0.39 -1.31 -1.52 -2.16 1.24 0.3 0.32 0.57 1.17 1.82 -0.76 1.1 1.34 1.35 1.02 0.13 0.12 -0.28 -0.01 -0.72 -0.86 -1.17 -1.11 -0.91 -1.17 -0.9 -0.68
-0.67 -1.37 -0.74 -1.21 -0.61 -0.4 0.24 -1.07 -0.65 -0.7 0.1 0.58 0.06 0.9 0.5 0.59 -0.54 0.63 0.02 0.15 0.32 0.16 -0.18 0.54 0.29 -0.17 -0.23 0.0 0.21 0.16 -0.11 -0.34 0.27
- - - - - - - - - -4.55 1.35 -0.03 1.69 0.79 1.37 1.28 -1.06 1.85 1.87 1.83 1.5 1.48 - - 0.61 -1.49 -0.58 - - - - - -
-0.85 -0.67 -0.72 -0.45 -0.5 -0.39 -0.32 -0.67 -0.85 -0.22 0.71 0.87 -0.58 0.46 0.21 0.39 -0.3 0.85 0.72 0.92 0.75 0.07 -0.42 -0.47 0.02 -0.06 0.04 -0.48 -0.34 -0.16 -0.72 -0.4 0.07
-2.18 -3.37 -2.8 -2.32 -1.79 -2.23 0.0 -1.26 -1.05 -5.09 1.46 0.7 1.31 0.45 1.68 1.51 -2.09 1.78 1.03 1.25 0.93 0.62 - 0.2 1.54 - -8.15 -5.97 - -5.65 - - -
-1.49 -1.01 -2.3 -2.78 -2.96 -1.66 -0.0 -1.62 -2.77 -0.22 0.92 0.92 -0.63 0.98 0.83 0.88 -0.55 0.89 0.87 0.6 0.62 0.85 -0.31 -0.11 -0.04 -0.44 -0.56 -0.91 0.42 0.63 -0.29 -0.79 -0.25
-1.43 -0.92 -2.34 -1.84 -1.43 -0.64 -0.94 -0.31 -0.15 0.34 1.09 0.34 -0.23 0.26 0.76 1.17 -0.9 0.97 0.99 0.49 0.99 -0.17 -1.2 -0.2 -0.37 -0.74 -0.7 -0.32 0.12 0.01 -0.05 -0.42 0.11
- - - - - - -3.6 - - - 0.99 -0.27 1.09 0.61 2.13 1.27 -0.87 1.86 1.69 1.46 1.59 0.87 1.07 -3.81 1.23 -3.9 -3.9 - - -7.88 - -8.04 -
-0.31 -0.29 -0.69 -0.59 -0.75 -0.71 -0.12 -0.6 -0.52 -1.18 0.89 -0.17 0.02 0.01 -0.42 0.76 -0.04 1.15 1.03 0.8 1.0 -0.21 -0.18 0.16 0.01 -0.15 -0.0 -0.64 -0.81 -0.65 -0.93 -0.86 0.35
-0.43 -0.62 -0.43 -0.64 -0.85 -0.99 -0.11 -0.25 -0.87 -0.04 0.58 -0.16 0.34 -0.23 0.26 0.98 -0.18 0.63 0.73 0.55 0.92 -0.19 -0.29 -0.23 0.06 -1.0 -0.92 -0.17 0.2 0.21 -0.11 -0.13 0.11
-0.94 -1.17 -1.09 -1.15 -0.48 -0.73 -0.66 -0.49 -0.34 -0.86 0.62 0.19 0.25 0.31 0.02 0.91 -0.32 0.36 0.71 0.96 0.75 0.07 0.02 -0.66 0.42 -0.62 -0.79 0.06 0.13 0.25 0.1 -0.18 0.28
-0.14 -1.26 -0.54 -1.24 -0.66 -1.37 0.17 -0.52 -0.97 -1.18 0.66 0.32 0.25 0.34 0.39 0.9 -0.62 0.65 0.79 0.78 0.62 0.06 -0.04 0.06 0.21 -0.08 -0.09 -0.37 -0.16 -0.22 -0.42 -0.44 -0.04
-1.55 -1.29 -1.41 -0.72 -0.78 -0.9 -0.14 -0.57 -1.15 0.26 0.59 0.47 -0.33 -0.57 1.23 1.25 -0.82 0.48 0.56 0.43 0.4 0.29 -1.43 0.34 0.6 0.21 0.14 0.18 -0.5 -0.41 -0.11 -0.3 -0.38
- - - -3.59 - - - -4.56 -4.71 - 1.72 -2.39 -0.29 -0.24 1.13 0.79 -0.49 1.62 1.1 1.8 1.01 1.64 -2.5 -0.96 -0.35 -1.54 -1.23 0.49 1.41 0.15 -2.47 -1.81 0.43
-2.29 -2.22 -1.32 -0.9 -1.03 -0.69 -0.68 -1.15 -1.05 0.21 0.33 1.11 -1.73 0.96 0.9 -0.32 -0.65 0.57 0.21 0.83 0.5 0.1 -1.21 -3.16 -1.16 0.23 0.19 0.87 -0.05 0.13 0.83 0.74 0.38
-0.76 -1.52 -1.4 -1.91 -0.93 -2.73 0.61 -0.66 -0.57 -1.06 0.22 0.34 0.79 0.51 -0.92 0.31 -0.36 0.24 0.32 0.23 0.06 0.91 0.81 0.14 0.6 0.06 -0.07 0.02 0.23 0.09 -0.03 -0.09 0.31
-1.06 -1.37 -0.82 -0.4 -0.24 -0.58 -0.3 -0.99 -0.9 -1.07 0.13 0.39 0.11 0.24 0.92 0.19 -0.25 0.07 0.29 0.56 0.27 0.49 0.07 1.21 0.11 -0.08 -0.24 -0.12 0.33 0.04 -0.33 -0.31 0.04
-0.94 -1.34 -1.55 -2.03 -1.27 -1.59 0.39 -0.75 -0.77 -1.23 0.2 0.86 0.38 0.47 -0.28 0.74 -1.08 0.6 -0.05 -0.11 0.18 0.65 0.82 0.25 0.48 -0.03 -0.06 -0.05 0.57 0.3 0.22 -0.16 0.11
-0.67 -0.29 -1.01 -0.85 -1.22 -1.0 -0.35 -0.7 -1.02 0.02 0.69 0.35 -0.27 0.69 0.55 1.05 -0.33 1.06 0.85 1.19 0.83 -0.07 -0.09 -0.85 -0.38 -1.1 -0.98 -0.47 -0.26 -0.18 -0.41 -0.52 -0.04
-0.77 -1.51 -0.48 -0.64 -0.27 -0.29 -0.38 -0.76 -0.82 -1.17 0.75 -0.0 0.81 -0.61 0.4 0.81 -0.35 1.14 1.07 0.63 0.87 -0.14 -0.15 -0.5 0.64 -0.09 -0.06 -0.74 -0.64 -0.33 -1.05 -0.82 0.01
-0.46 -0.93 -0.62 -0.52 -0.09 -0.52 0.01 -0.58 -0.58 -1.04 0.25 -0.11 -0.32 0.19 -0.25 0.64 -0.99 0.27 0.2 0.14 0.14 -0.01 -0.23 0.59 -0.6 -0.22 -0.41 0.57 0.85 0.47 0.44 0.35 0.56
-1.62 -2.12 -1.86 -1.86 -1.39 -0.95 0.67 -1.51 -1.4 -0.67 0.32 0.52 0.14 0.83 0.21 1.16 -0.84 0.52 -0.02 0.36 0.36 0.15 -0.26 0.88 0.09 -0.35 -0.33 -0.07 0.61 0.51 0.22 -0.37 0.37
-1.52 -2.25 -1.35 -2.2 -1.58 -3.07 1.02 -1.85 -2.77 -2.72 -0.02 0.45 0.78 0.84 -0.21 0.69 -0.21 -0.15 0.12 -0.12 -0.16 1.13 0.32 0.14 1.08 -0.05 -0.3 -0.03 0.63 0.33 0.54 -0.07 0.17
-0.27 -0.73 -0.55 -0.92 -0.44 -1.25 0.7 -0.43 -0.42 -0.95 -0.25 0.41 0.4 0.69 0.7 0.29 -0.94 -0.19 0.02 0.31 0.17 0.76 0.94 0.69 -0.02 -0.27 -0.43 -0.47 -0.13 -0.06 -0.33 -0.57 -0.01
-0.55 -1.22 -0.75 -1.67 -0.61 -1.29 0.69 -0.6 -1.04 -1.1 0.54 0.25 0.18 0.58 0.28 0.96 -0.38 0.6 0.22 0.35 0.27 0.31 0.14 0.13 0.61 -0.36 -0.44 -0.09 0.17 -0.04 -0.11 -0.27 0.06
-0.59 -1.31 -1.15 -1.47 -0.67 -0.58 -0.14 -0.69 -0.61 -0.5 0.38 0.18 0.06 0.69 0.39 0.55 -0.38 0.44 0.4 0.55 0.64 0.08 -0.11 -0.43 0.01 -0.13 -0.13 0.19 0.23 0.36 -0.03 -0.03 0.58
-1.54 -1.58 -1.57 -2.02 -1.41 -2.02 -0.38 -0.47 -0.49 -0.87 0.7 0.28 0.55 0.19 1.24 1.56 -0.89 0.37 0.84 0.63 0.78 0.58 0.32 0.35 0.21 -0.87 -1.07 -0.38 -0.43 -0.41 -0.25 -0.24 -0.77
-0.72 -1.75 -0.85 -1.29 -0.19 -1.36 0.63 -0.71 -0.59 -1.31 -0.03 0.77 0.69 0.44 0.16 0.95 -0.42 0.01 0.19 0.3 -0.11 0.62 -0.05 1.54 0.21 0.0 -0.38 -0.41 -0.08 -0.36 -0.37 -0.51 -0.72
-0.48 -1.18 -0.96 -1.51 -0.84 -0.95 0.15 -0.5 -0.27 -0.37 0.16 0.75 0.28 0.63 0.9 0.94 -1.37 0.28 0.12 0.32 0.21 0.4 0.3 0.46 -0.18 -0.48 -0.59 -0.05 0.06 -0.09 -0.02 -0.1 -0.01
-0.87 -1.44 -0.75 -0.88 -0.33 -1.69 0.75 -0.24 0.43 -1.04 -0.17 0.64 0.94 0.65 0.36 0.11 -1.09 -0.59 -0.09 -0.1 -0.11 0.93 0.02 0.87 -0.29 -0.39 -0.46 -0.3 0.23 0.24 -0.09 -0.29 0.34
-1.17 -0.75 -1.02 -0.63 -0.88 -1.18 0.1 -1.51 -1.72 -0.54 0.6 0.55 -0.06 0.35 0.3 0.78 -0.52 0.66 0.66 1.14 0.7 -0.05 0.07 -1.31 0.02 0.15 0.02 -0.33 -0.21 -0.03 0.09 0.21 0.2
-0.92 -1.13 -1.34 -1.63 -1.39 -1.03 0.04 -0.8 -0.86 -0.69 0.33 0.66 0.2 0.85 0.92 0.91 -1.37 0.59 0.11 0.22 0.17 0.23 0.03 0.6 -0.18 0.16 0.07 0.05 0.12 0.0 -0.04 -0.07 0.05
-3.84 -4.09 -6.32 -3.52 -7.0 - -2.87 - - - 1.49 0.5 1.39 0.87 1.99 1.8 -1.07 1.04 0.69 1.29 1.47 1.21 -2.02 -1.48 1.38 -2.91 -2.97 -4.35 -1.18 -1.26 -2.7 -3.29 -2.55
-1.1 -1.22 -1.32 -1.1 -0.92 -2.33 0.86 -0.74 -0.27 -1.22 0.41 0.77 0.39 0.62 0.18 0.68 -0.59 0.31 0.39 0.85 0.63 0.74 0.82 0.01 0.29 -0.2 -0.38 -0.81 -0.32 -0.17 -0.64 -0.96 -0.08
-1.84 -2.64 -2.63 -3.03 -1.67 -1.76 0.44 -1.25 -1.37 -0.32 0.49 0.45 0.64 0.58 0.59 1.55 -0.76 0.76 1.26 0.88 1.02 0.22 0.23 0.25 -0.1 -0.69 -0.62 -0.87 -0.78 -0.31 -0.55 -0.51 -0.18
-1.28 -1.03 -2.15 -2.22 -1.74 -1.45 0.28 -1.14 -1.23 -0.54 0.6 0.3 0.17 0.66 0.22 1.47 -1.05 0.88 0.88 0.68 0.84 0.2 0.17 -0.48 -0.29 -0.59 -0.63 0.11 0.46 0.02 -0.0 -0.38 -0.12
-0.96 -1.96 -1.12 -1.72 -0.52 -2.0 0.84 -0.24 -0.5 -1.55 0.89 0.51 0.02 0.75 0.58 1.01 -0.18 0.59 0.73 0.55 0.75 0.58 0.65 -0.77 0.24 -0.1 -0.06 -1.19 -0.76 -0.55 -0.66 -0.77 -1.03
-2.06 -1.92 -0.91 -0.44 -0.48 -2.16 -0.85 -0.83 -0.66 -0.07 0.17 -1.01 -1.29 0.15 1.11 1.31 -0.96 0.83 1.01 1.33 1.01 -0.51 -0.67 -0.39 -1.26 -0.8 -1.07 0.19 0.27 0.32 -0.0 0.5 0.49
-1.2 -1.67 -0.73 -1.18 -0.71 -0.8 0.09 -0.09 -0.49 -0.25 0.12 0.43 -0.48 0.57 0.53 0.61 -1.3 0.36 0.33 0.19 0.44 -0.01 -0.07 0.26 -0.75 -0.62 -0.6 0.42 0.74 0.4 0.47 0.18 0.62
-1.15 -1.27 -1.26 -1.2 -0.75 -0.01 0.28 -0.25 -0.55 0.2 0.1 0.3 -0.55 0.01 0.81 0.9 -1.09 0.29 0.58 0.42 0.55 0.31 -0.66 0.26 -0.46 0.27 0.11 -0.11 -0.08 -0.01 0.01 0.0 0.33
-4.09 -3.57 -3.77 -5.81 -2.38 -3.84 -0.4 -2.79 -1.32 -2.82 0.65 0.61 0.13 0.58 0.74 1.91 -0.55 0.59 1.59 1.2 1.02 0.77 0.69 0.35 -0.8 -0.9 -0.73 -1.02 -0.55 -0.14 -0.58 -0.51 -0.68
-1.53 -1.3 -1.01 -0.54 -0.85 -2.08 0.02 -1.39 -1.34 -0.18 -0.01 0.42 -0.62 1.19 0.82 0.75 -1.13 0.44 0.67 0.71 0.8 -0.75 -0.87 -1.45 -0.14 -1.58 -1.77 0.54 0.95 0.26 0.8 0.51 0.41
- -3.6 - -3.58 - - 1.0 -5.23 - - 1.43 0.96 -1.08 -1.41 -2.32 1.18 -0.42 1.26 1.36 1.47 0.68 0.47 0.41 0.1 0.18 -1.18 -1.17 -0.04 -0.08 0.6 -0.17 0.52 0.27
-0.36 -1.49 -0.56 -0.89 -0.08 -0.93 0.04 -0.7 -0.91 -1.11 0.66 0.76 -0.11 0.24 0.68 0.87 -0.68 0.54 0.8 0.83 0.55 0.36 0.2 -0.49 0.34 -0.13 -0.2 -0.71 -0.56 -0.26 -0.47 -0.34 -0.24
-1.36 -1.4 -1.46 -1.27 -1.03 -0.36 0.26 -2.08 -1.76 -1.65 1.04 0.68 -0.54 0.88 0.28 1.01 -0.3 1.12 0.83 0.95 0.93 0.09 -1.55 1.16 -0.22 0.14 0.18 -1.33 -0.66 -0.72 -1.39 -0.92 -0.28
-3.4 -2.76 -5.9 -4.75 -4.78 -4.65 -1.4 -4.8 -4.07 -2.65 1.3 0.51 0.26 0.75 1.34 1.97 -0.36 1.73 1.65 1.1 1.66 0.34 -0.78 -1.1 1.01 -1.1 -0.7 -3.74 -2.92 -2.89 -2.48 -2.76 -2.6
-3.28 -3.29 -3.66 -4.12 -2.32 -6.18 -1.36 -3.58 -3.29 -3.18 0.68 0.02 -0.21 0.91 -0.11 1.91 -1.04 1.47 1.03 1.49 1.55 0.8 -0.16 0.39 -0.08 -0.74 -0.98 -0.15 -0.22 -0.9 -0.34 -0.11 -0.53
- - - - - - - - - - 1.08 1.54 - -0.88 1.37 1.16 -1.32 1.19 1.22 2.31 1.05 -1.18 - -1.81 -1.52 -3.32 -4.98 0.12 1.04 0.88 -0.1 1.5 -0.67
-1.11 -1.29 -1.55 -1.78 -1.48 -3.15 1.21 -0.85 -0.48 -1.07 -0.65 0.87 0.44 0.84 0.45 0.6 -1.29 0.07 0.15 0.26 0.2 0.72 0.3 1.08 -0.32 -0.98 -1.24 0.12 0.49 0.28 0.25 -0.07 0.02
-0.83 -1.67 -0.58 -1.64 -0.22 -2.09 0.35 -0.23 0.06 -1.22 0.2 0.31 0.76 0.52 0.32 0.54 -0.66 0.4 -0.02 0.19 0.27 0.68 0.76 0.37 0.59 -0.17 -0.3 -0.36 -0.08 -0.01 -0.3 -0.57 -0.08
-1.03 -0.67 -1.75 -1.75 -1.29 -1.35 0.2 -0.67 -0.75 -0.01 0.83 0.29 0.1 0.73 0.27 1.53 -0.79 0.95 0.96 0.54 0.7 0.16 -0.4 -0.56 -0.47 -1.83 -1.82 0.14 0.33 -0.08 -0.13 -0.31 -0.19
-2.23 -2.15 -2.21 -2.66 -2.33 -2.49 0.63 -1.49 -2.33 -1.02 0.7 0.93 -0.21 0.31 -0.49 0.99 -0.33 -0.34 1.04 1.18 0.78 0.64 0.7 0.32 0.09 -0.09 -0.26 -0.22 0.07 0.27 -0.04 -0.46 0.26
- - - - - - -3.66 - - - 1.37 -0.21 1.13 -0.18 2.09 1.54 -2.1 1.43 1.69 1.57 1.68 0.68 1.46 -2.73 1.26 - - - - - - - -
-0.27 -1.19 -1.24 -1.48 -0.86 -1.64 0.34 -0.59 -0.91 -1.71 0.02 0.23 1.04 0.71 0.05 0.08 -0.35 -0.4 -0.0 -0.06 -0.15 0.74 0.6 0.63 0.43 -0.11 -0.16 -0.12 0.53 0.42 0.26 -0.18 0.35
- - -5.04 - -4.13 - -2.98 - -4.91 - 1.08 1.7 1.65 -3.51 2.17 -0.13 -0.87 2.5 1.92 1.72 1.68 0.1 - - -0.01 - - - - - - -3.08 -3.48
- - - - - - - - - - 1.22 0.19 2.22 0.48 1.66 1.15 -0.68 0.95 1.6 1.52 1.69 1.73 - - 1.37 -2.24 -1.62 - - - - - -
-1.28 -3.02 -1.92 -2.73 -0.86 -2.12 0.52 -0.36 -0.38 -1.4 0.97 0.84 0.82 0.27 0.89 0.84 -0.06 0.69 0.13 0.62 0.22 0.93 0.94 -0.03 0.75 -0.39 -0.21 -1.26 -0.97 -0.72 -1.24 -1.07 -0.63
-0.73 -1.18 -0.74 -1.05 -0.44 -0.57 -0.13 -0.25 -0.18 -0.52 0.61 0.12 0.18 0.44 0.48 0.84 -0.81 0.52 0.61 0.38 0.56 0.06 0.51 0.12 0.01 -0.3 -0.46 -0.3 0.04 -0.05 -0.17 -0.33 -0.08
- - - - - - -2.82 - - - 1.37 0.63 1.26 1.01 1.87 0.92 -2.0 1.59 1.4 0.8 1.49 0.86 1.81 -1.39 1.3 -6.02 -5.89 -5.35 -5.55 -6.79 -6.92 -4.77 -5.23
-2.44 -2.01 -2.38 -2.09 -1.13 -2.67 -0.47 -2.46 -2.03 -1.43 0.88 0.26 -0.07 0.7 -0.13 1.76 -0.87 1.21 0.49 1.47 1.46 0.32 -0.44 -0.19 0.31 -0.67 -0.71 0.13 -0.29 -0.61 -0.53 -0.08 -0.36
-1.76 -2.47 -2.32 -3.14 -1.85 -2.32 -0.14 -2.11 -1.52 -2.42 1.17 1.09 -0.59 1.1 0.72 1.71 -0.78 1.53 1.47 1.28 1.34 0.59 -0.09 -1.38 -0.05 -0.51 -0.88 -1.91 -1.72 -1.93 -2.01 -1.39 -2.07
-1.21 -1.16 -1.58 -1.69 -0.6 -1.77 0.17 -0.62 0.22 -1.07 0.06 1.3 0.63 0.96 0.56 0.79 -1.27 -0.14 -0.08 0.01 -0.03 0.78 -0.18 1.3 0.09 -0.12 -0.41 -0.63 -0.18 -0.07 -0.35 -0.54 -0.16

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.