Heatmap: Cluster_7 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-8.11 - -6.94 -7.16 -6.66 -5.53 -3.1 -6.23 -4.21 - -0.24 0.05 1.85 1.53 -1.37 1.03 1.65 0.08 0.1 -0.06 0.06 -0.09 3.03 -1.2 2.15 -3.46 -2.74 -3.96 -3.1 -4.59 -3.43 -3.67 -4.16
-6.6 -9.28 - - - - -5.27 - - - 0.21 -1.17 3.27 0.56 -7.47 -0.39 1.82 -0.3 0.39 -1.5 -0.31 1.54 2.49 -2.46 1.9 -4.13 -3.28 -6.99 -4.95 -5.6 -7.06 -6.91 -5.27
- - - - - - - - - - - - 2.51 - - - 3.73 - - - - - 2.93 - 2.5 -3.03 -0.74 - - - - - -
-3.94 -3.48 -4.87 -5.81 -7.24 -9.44 -0.17 -10.61 - -9.13 -3.06 -0.13 3.79 0.53 -3.89 -3.12 1.65 -4.32 -4.94 -5.65 -5.77 1.64 2.32 -2.08 1.67 -2.3 -1.28 -9.59 -9.61 -8.93 - - -7.42
- - - - - - - - - - - - - - - - 4.03 - - - - 3.39 - - 1.68 0.64 0.49 - - - - - -
-3.61 -2.75 -3.08 -2.74 -2.32 -1.7 -3.55 -1.01 0.37 -1.51 0.49 -0.15 -1.6 - 0.11 0.63 1.7 1.97 1.34 0.02 0.31 -0.65 -1.66 -0.7 0.15 -1.71 -1.49 0.52 1.26 0.86 -0.07 -0.95 1.07
-0.34 1.43 - 0.86 -2.5 -0.35 2.7 -0.04 -1.2 - - - - - - - 3.72 - - - - - -0.31 - - 1.77 0.52 - - - - - -
- - 0.35 - - - - - - - - - 2.3 - 0.56 - 3.82 - - - - - - - 2.92 - 1.85 - - - - - -
- - -6.1 - - -8.33 -8.72 -8.55 - -10.14 1.45 -6.39 -0.9 -5.06 -1.89 1.39 2.51 1.97 2.54 1.55 2.19 -10.8 -2.89 -8.37 -0.52 -0.29 0.67 -4.71 -3.18 -2.36 -3.57 -4.94 -2.66
-1.36 -1.2 -3.28 -5.08 -4.96 - 1.21 -3.48 -4.7 - 0.62 -1.98 1.13 -0.97 -4.29 0.83 2.48 -4.22 -1.16 -1.07 -1.55 -2.1 3.11 -4.55 -0.09 0.74 1.05 -2.04 -0.01 -1.51 -2.46 -5.12 0.0
- - 2.18 - - - - 3.86 2.7 - - - - - - - 2.9 - - - - - - - - - - - - - - - -
- -5.13 - - -4.38 - -4.7 - - - - -2.65 4.0 0.06 - - 3.5 - - - - 0.14 -0.07 - 0.64 -5.93 -0.58 - - - - - -4.63
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - - - - - - -0.85 - - - - 2.09 - - - 4.11 - - - - - 2.05 - 2.21 -1.89 0.85 - - - - - -
-2.46 -0.73 -1.93 -1.39 -2.73 - -2.44 -2.24 - - -0.08 -1.39 - - - 0.11 1.35 -1.31 0.9 -0.48 -1.45 -0.84 -1.51 - - 0.27 1.46 1.07 1.13 2.34 1.79 1.07 1.57
-3.27 -1.72 -6.77 -8.58 -7.35 -5.76 -0.06 -6.47 - - -0.05 -0.66 2.69 0.36 - -0.7 2.02 -0.35 -0.52 -1.2 -0.7 1.48 2.39 -0.94 1.96 -0.74 -0.33 -2.98 -1.27 -2.37 -3.11 -4.45 -1.51
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
-2.33 -1.15 -5.42 -3.47 -6.34 -7.21 -0.54 -4.43 -7.41 -7.43 0.51 -0.39 2.63 0.94 - -0.61 1.96 -0.31 0.57 -1.54 -0.5 1.4 1.61 -1.77 2.39 -0.88 -0.66 -4.1 -2.17 -2.48 -3.13 -3.6 -2.38
- - -3.52 - -4.3 -1.2 - -0.84 -2.92 - 2.14 - 1.24 - - 1.73 2.12 1.54 1.15 0.72 0.75 - 0.21 - 1.36 -4.26 -2.19 -0.27 -0.71 -1.97 0.11 -0.92 0.63
-1.51 -1.49 -2.52 -1.28 -1.98 - -2.82 -5.81 - -0.75 -0.71 -1.06 2.47 -1.37 - 0.16 1.72 -0.36 0.1 -0.35 -0.32 1.64 2.58 -1.13 1.87 -0.15 0.64 - - -5.96 - -2.82 -
- - -3.22 -4.56 -3.52 -4.03 - -4.67 -3.49 - 1.22 0.17 -1.58 -0.36 - -1.1 3.07 1.3 0.15 -0.91 1.21 2.31 -1.94 - 2.47 -0.35 0.22 - - - - - -
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
-5.41 -4.56 - - - - -4.38 - - -3.85 1.71 1.41 2.28 -2.34 - -1.43 0.51 0.32 1.9 -0.62 0.77 1.69 -1.88 -4.59 2.47 -0.2 0.48 -3.85 -3.0 -1.49 -2.57 -2.24 -1.19
- -4.33 - - - - -1.66 - - - -0.33 -1.42 2.59 -2.27 - -2.19 2.11 -2.29 -1.4 -3.56 -1.43 -0.01 3.72 -3.94 2.03 -1.25 -0.06 - - - - - -
-0.65 -1.39 0.62 0.88 0.56 - - - - - 1.96 0.41 - - - - 2.34 0.49 - 0.32 1.58 - - - 1.68 - -2.87 - -0.42 1.93 0.27 0.48 -0.48
-0.9 0.25 -1.45 -1.44 -0.17 - -3.65 - -3.52 - 0.1 -0.83 2.29 0.58 - 0.09 2.18 -0.75 -1.48 -0.55 0.7 1.38 2.39 -2.84 1.21 -0.4 0.41 - - -3.59 -3.81 -3.62 -
-3.65 -2.51 -3.88 - - - -3.37 - -4.32 - -4.28 1.07 1.55 -2.31 -2.31 -4.98 2.48 -3.24 - -4.99 - 0.08 2.32 -0.83 2.38 1.42 1.93 -4.15 -0.77 0.36 -3.69 -1.33 -0.85
-5.08 -2.18 -6.28 - - - - - -5.65 -6.34 - -1.14 2.61 - - - 2.62 - - - - - 3.27 -3.39 3.1 -3.15 0.51 - -4.25 - - - -3.08
- - - - - - -3.83 - - - - - 3.09 - - - 3.29 - - - - - 2.94 0.63 2.11 -6.63 0.1 - - - - - -
-4.21 -3.47 -3.66 -1.51 -1.74 -2.38 -1.12 -2.31 -2.58 -1.44 -0.01 1.98 0.41 2.24 0.58 0.16 2.09 0.0 -0.95 0.59 -0.83 0.85 -0.3 0.11 0.22 -0.03 0.17 -2.32 -2.03 -0.66 -2.06 -2.37 -0.31
-4.37 -2.67 -8.56 -8.79 -10.26 -8.14 -2.13 - - - 0.34 -1.89 3.24 -0.56 - -0.4 1.44 -0.01 0.58 -1.46 -0.63 1.37 2.34 -1.55 2.3 -2.34 -1.9 -4.25 -2.94 -2.91 -4.18 -4.7 -3.11
- -6.45 - - - - -5.8 - - - 1.52 -3.2 2.65 -0.92 -0.61 0.01 2.55 1.21 1.32 -0.42 1.04 -0.01 -2.9 -2.03 1.33 0.48 1.47 - - -5.74 - - -
- - - - - -4.54 - -5.76 - - - -0.46 2.79 -1.27 -3.91 - 2.73 - - - - 2.62 -4.45 1.26 3.25 - -2.93 - - - - - -
- - -4.67 -3.69 -3.26 -2.86 -6.44 - - - -2.37 0.45 3.65 0.23 -2.25 - 1.33 -4.93 -5.04 -5.1 -5.07 2.07 0.2 0.77 1.57 1.14 1.18 - - - - - -6.98
- - - - - - -9.34 - -9.29 - - -2.15 2.76 -9.28 - - 3.42 - - - - 0.76 1.8 -8.53 3.27 -5.73 -1.19 - - - - - -
-6.1 -6.89 -6.51 -8.89 -10.45 - -3.64 - -10.79 - -0.01 -2.27 2.19 -1.22 -1.1 0.87 1.58 0.36 -0.29 0.36 -0.1 -2.28 -0.31 -1.56 1.47 -0.21 -0.23 0.77 0.7 0.95 0.69 0.55 1.54
-6.06 -5.54 -6.36 -7.89 -9.05 -6.78 -4.28 -10.44 -9.94 - -0.11 -2.85 1.57 -1.86 -1.58 0.31 2.35 0.45 -0.21 -0.06 -0.12 -2.98 -0.55 -2.57 1.44 -0.69 -0.55 0.78 1.0 1.3 0.96 0.7 1.61
-7.53 - - - -9.26 - -6.62 - - - - -1.95 2.71 -1.72 - - 3.35 - - - - 1.84 0.8 -0.63 3.15 -5.87 -0.4 - - - - - -
-0.67 -0.72 -0.43 -0.18 -0.73 0.82 -1.35 -0.08 0.16 -0.71 -7.72 0.43 3.13 -0.06 -6.62 - 2.13 - - - - -2.1 1.29 1.91 0.87 -2.08 -0.37 - - - - - -7.52
- - - - - - -6.43 - - - -6.48 -5.38 3.85 - - - 2.2 - -5.41 - - -4.02 1.62 - 3.4 -6.05 -2.06 - - - - - -
- - - - - - - - - - -1.86 - 2.5 - - - 3.3 - - - - 0.59 3.31 - 2.47 - -1.68 - - - - - -
- - - - - - -0.17 -2.0 - 1.08 -0.18 2.17 2.93 1.18 0.44 - 1.45 - 1.15 -1.24 -0.21 2.29 - - - - - - -2.16 -0.64 -2.36 -1.12 -1.08
- - - - - - - - - - - - 2.44 - - - 3.67 - - - - 1.01 2.83 -2.85 1.52 -1.39 1.23 - - - - - -
-5.27 -4.7 -7.86 - -5.69 -5.89 1.46 - - - - 1.42 2.62 2.24 - -5.82 2.19 - - - - 0.32 1.5 0.14 2.49 -0.84 -0.83 - -4.99 - -5.89 -6.89 -
-7.55 - -7.0 -7.26 -8.69 - -5.34 - - - 0.9 -1.58 1.79 -0.44 0.14 1.22 1.94 1.21 1.19 0.59 0.24 1.21 1.33 -2.92 2.3 -2.04 -0.41 -2.96 -2.3 -1.84 -2.5 -2.85 -2.43
-5.8 -7.81 -9.3 -6.03 -8.98 -7.89 -3.91 -7.0 -9.15 - 1.24 -1.61 3.11 -0.6 0.44 -0.26 1.38 1.51 1.19 -0.2 0.86 1.25 -3.0 -1.42 1.59 -0.35 0.68 - - - - -8.77 -
-5.26 -5.02 -6.49 -6.6 -7.62 -8.26 -4.03 -10.48 -10.04 -9.66 0.58 -1.53 3.3 -0.31 0.34 -0.81 1.84 0.25 -0.04 -0.91 -0.18 1.75 -2.19 -0.99 2.02 0.18 1.09 - - - - - -10.53
- - -2.06 - -6.38 - - - - - 1.97 -2.36 2.09 -2.93 -3.93 1.56 2.8 1.09 1.32 -0.33 -1.41 -1.26 0.85 -1.87 2.22 -0.73 -0.53 - - - - - -
-7.09 -6.5 - -7.48 -9.46 - -0.13 - -8.42 - 0.94 0.86 2.49 1.31 -0.48 0.73 1.45 0.74 0.62 0.5 0.54 1.23 1.39 -1.5 1.52 -4.66 -6.79 -3.83 -2.97 -2.6 -3.97 -2.7 -2.11
-8.05 -5.37 - - -6.64 -5.53 - -5.24 -6.8 - 0.59 - 1.56 -2.52 -0.06 0.56 3.33 1.03 0.34 1.1 0.82 -8.07 -3.51 -2.98 2.29 0.25 1.12 -7.17 -5.95 -5.15 -5.18 - -4.95
-3.46 -5.78 -4.44 -2.06 -3.52 -4.14 - -2.83 -3.27 - - - 3.03 -3.97 -3.97 - 3.38 - - - - -2.13 -0.64 -1.64 3.14 0.68 0.77 - -3.99 -4.01 - -3.46 -4.95
- - - - - - - - - - - 0.11 2.84 0.12 - - 2.59 - - -1.78 - -1.46 3.42 -1.94 2.58 - -2.98 - - - - - -
- - - - - - - - -7.49 - - - 0.42 - - - 4.41 - - - - - -3.2 2.69 1.04 -1.67 0.61 -7.16 - - - - -
- - - - - - - -0.44 - - 0.31 - - - - - 4.39 - - - 0.35 - - - - 0.45 2.64 -0.67 - - - -0.74 -
-1.48 -0.7 -2.51 -2.19 -2.48 -2.44 0.85 -0.45 -2.72 -2.13 -1.98 0.33 1.26 0.34 -1.28 -0.84 1.84 -2.55 -2.98 -2.3 -2.51 1.35 3.11 -1.29 1.54 -1.11 -0.45 -1.77 -0.92 -1.36 -1.18 -2.24 -1.42
-2.99 -0.36 - -2.03 -2.63 - -0.63 -1.18 -0.84 - -2.01 0.08 2.46 2.09 -0.91 - 0.87 - -1.94 -1.01 - 1.81 1.29 - - -0.37 0.64 0.26 1.39 0.24 -0.21 -1.04 0.32
1.0 0.69 -0.43 -1.25 -1.0 -1.41 0.65 -2.41 -2.76 -1.68 -0.76 0.03 1.23 1.25 -1.1 -1.7 0.4 0.11 -1.64 -3.52 -0.31 0.64 1.36 -0.09 -1.8 -0.11 -0.19 -0.19 0.44 0.65 0.35 0.06 0.16
- - - - - - - - - - - - - - - - 3.22 - - - - - - 3.21 2.18 0.16 0.08 - - 1.02 - - 2.51
-1.12 -1.65 -1.2 -0.95 -1.64 -1.68 -3.02 -1.32 -1.96 -1.15 1.38 -2.19 -0.05 -1.51 -0.49 0.32 2.12 1.49 1.11 0.61 1.34 -2.45 -1.28 -3.27 0.58 1.0 1.34 -0.96 -1.09 -0.89 -0.64 -0.65 -1.27
- - - - - 0.25 - -0.4 -1.55 - -0.65 - -0.03 - 0.46 0.95 2.1 - 2.13 - - -0.64 0.92 0.79 2.67 -0.73 0.61 -1.47 - -0.67 -0.69 -0.36 1.0
-1.08 -2.3 - - - -0.53 -1.4 - - - 0.66 -0.38 -0.46 - - 0.54 1.91 0.7 - 1.85 1.15 - - - -0.34 0.7 1.62 -1.45 1.37 0.2 0.65 1.23 0.99
-2.88 -5.68 -4.0 -5.67 -4.08 -4.09 0.29 - -2.3 - -1.05 -0.98 -2.36 1.16 -0.79 -0.06 1.06 -1.48 -2.1 0.96 -1.62 0.08 1.78 -2.33 -0.32 0.57 0.59 1.31 1.18 1.28 0.84 0.44 1.34
- - - - - - - -1.78 - - 2.12 0.65 0.4 - -0.92 - 3.28 -0.85 1.46 -0.02 -0.99 -1.86 - - 2.81 -2.1 0.56 - -0.76 -1.89 - - -0.83
- -2.78 -4.15 -0.34 -0.88 -1.88 2.77 - - - -2.71 -0.17 1.61 -0.16 -3.07 -3.16 2.1 - - - - 1.28 2.58 0.07 0.36 -2.28 -1.67 -1.3 -1.61 0.65 -2.29 -4.1 0.11
- - - - - - - - - - - - - - - - 4.37 - - - - - - - - - - 3.62 - - - - -
-1.0 -0.93 -2.68 -3.27 -4.58 -4.76 -1.27 -5.4 -5.62 - -0.42 1.13 1.73 -1.18 -3.54 -6.22 2.28 -5.06 -1.91 -4.22 -6.19 0.02 2.33 -2.14 2.12 0.9 0.86 -2.94 0.27 1.13 -2.01 -1.76 -0.32
- - - - - - - - - - - - 4.91 - - - 1.56 - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - - - - - - - - - -0.67 -4.5 3.26 - -2.91 -4.0 3.85 -2.42 - -3.27 -3.56 -4.43 -2.16 - 2.02 -2.97 1.72 - - - - - -
- - - - - - -2.63 - - - 1.05 - -0.83 - 0.75 - 3.29 1.2 0.72 0.14 1.27 1.6 - - - 1.39 2.41 - -2.69 -2.7 - - -
-1.69 -2.36 1.19 0.29 0.42 - -0.35 2.12 0.38 1.09 - - 0.79 - - - 1.91 -0.54 - - - -0.39 0.59 0.46 - - - 0.16 1.96 0.16 - - 1.66
- - - - - - - 1.03 - -0.82 -0.17 - -1.43 0.8 - - 2.07 - - - - 3.12 - - - -1.19 0.69 -1.45 0.69 2.1 0.16 0.98 1.61
-1.7 -0.79 -2.4 - -3.86 - -0.15 - - - 0.55 1.28 1.71 - 1.29 0.31 1.54 -3.11 -0.9 -0.28 -0.93 2.14 1.79 0.56 0.55 -0.39 -0.11 -1.85 -1.67 -0.79 -1.44 -1.04 -0.57
- - - - - - - - - - - -1.04 2.07 - - - 2.9 - - - - 2.23 3.86 - -0.42 -5.07 -0.78 - -1.96 - - - -
- - - - - - - - - - 2.31 -4.4 0.86 - -0.0 1.42 3.35 1.54 1.03 1.21 -0.21 - -2.2 - 1.29 -1.3 0.16 - - - - - -
-2.34 -1.49 -4.82 -2.71 -2.52 -1.93 -1.75 -5.24 -2.65 -5.9 1.11 -3.15 2.02 0.46 -1.22 0.23 1.91 1.02 0.82 0.41 0.33 1.19 -0.04 -1.08 -0.52 0.04 0.64 -0.38 0.36 -0.44 -1.68 -0.81 0.29
-2.47 -5.16 -4.77 -1.02 -4.61 -2.37 1.05 -2.51 -4.24 -2.67 0.79 -0.16 -2.31 -0.54 -1.24 -1.74 2.19 -0.46 -0.81 0.37 0.65 0.23 -1.36 -3.49 -0.5 0.92 1.29 0.91 0.84 0.55 0.65 0.91 0.4
-1.62 -4.57 - - -2.11 - 0.25 - - - 1.39 0.46 -1.32 0.09 -0.91 1.49 1.04 0.16 -0.26 0.99 1.51 -1.85 -2.77 0.21 1.45 -1.01 0.51 0.07 -0.1 0.04 0.15 0.93 0.42
- - -1.91 - - - - - - - - - -0.12 - - - 3.16 - - - - - 4.37 - 0.97 -2.55 - - - - - - -
- - - - - - - - - - 0.27 -0.9 2.45 -0.89 - -2.3 2.19 -1.14 -1.66 -2.31 -0.61 -2.15 3.0 -2.46 3.09 -1.02 0.52 - - - - - -
- - - - - - - - - - - - - - - - 4.69 - - - - - 2.86 - - - - - - - - - -
0.23 0.01 -0.13 -0.45 -0.93 -1.85 0.58 -1.56 -1.54 -0.63 -0.98 0.31 0.53 0.27 -0.22 -0.22 3.32 -0.63 -0.64 -0.6 -0.63 -2.08 1.3 -5.15 1.2 -0.83 0.2 -6.97 -5.98 -4.17 -5.03 -6.88 -6.29
- - - - - - -7.23 - - - -2.69 -1.26 3.22 -3.4 -3.03 -1.17 2.36 - -1.91 -6.3 -3.46 -0.76 2.57 -2.29 2.73 -1.8 0.22 -0.83 -3.42 -4.63 -1.05 -0.8 -1.24
- - -7.0 -6.58 -7.7 -4.81 -3.73 - - -6.84 -3.41 - -0.72 -2.48 -5.23 -3.97 3.86 - -4.63 -5.33 -6.47 -3.47 - - -0.42 2.74 3.29 - - - - - -
- - - - - - - - - - -0.12 - 3.05 - 2.81 -0.9 2.62 -2.13 1.26 -3.3 -0.18 -0.13 0.67 -3.46 1.84 - -4.94 -4.52 - - -3.24 -3.13 -
- - - - - - - -0.34 - - - - 1.25 - 2.99 - 2.99 3.41 - - - - 0.38 -0.75 -0.46 - -1.48 - - - - -1.53 -
- - - - - - - -3.93 -2.5 - - - 1.74 - - - 4.53 - - - - - 0.26 0.57 0.13 0.31 0.15 - -1.92 - - - -
- - - - - - - - - - -1.62 - 3.14 -3.48 - - 3.59 -1.82 - -5.9 - -2.27 1.23 -0.01 2.54 -1.09 0.68 - - - - - -
-2.09 -2.06 -3.61 -2.17 -1.31 -3.41 -2.16 -4.4 -2.31 - - 0.82 1.98 - - - 2.72 - - - - -3.43 2.96 0.96 2.85 -0.82 0.1 -2.06 - - - -3.79 -
- -3.74 -2.98 - - - -1.46 - -1.45 - - -1.14 1.98 - - - 2.09 - - - - -0.25 3.23 -0.67 3.59 - -1.07 - -3.54 - - - -
- - -4.27 -5.3 - - -0.02 - - - - 0.56 1.91 1.95 - - 1.88 - - - - 1.48 3.08 0.42 2.37 -3.74 0.45 - - - - - -
-2.93 -2.76 -3.64 -5.16 - - -5.16 - - -1.24 - -1.82 3.98 - - - 1.99 - - - - -0.18 0.13 -4.39 3.23 -6.39 -1.64 -5.21 -5.16 -2.34 -4.0 - -
- - - - - - -0.91 - - - -1.82 1.25 -1.91 - - - 2.43 - -0.88 - - -0.79 - - 0.77 0.25 1.79 1.5 1.45 1.81 0.02 1.91 1.51
- - - - -7.07 - - -6.94 - - 0.53 - 2.26 - 0.22 1.14 3.01 0.64 0.84 0.99 0.54 - -1.82 - 2.22 0.27 1.22 -6.09 - - - - -5.76
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.