Heatmap: Cluster_323 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - 0.0 - - - -1.77 -0.07 0.19 0.52 0.34 -0.79 1.12 -0.63 0.8 -0.79 1.0 0.23 1.24 -1.95 0.87 -6.17 -3.62 1.05 1.52 0.79 0.71 1.21 1.53
-0.81 -1.64 -1.16 -1.8 -0.88 -2.67 -0.02 -2.16 -2.0 -4.15 -0.46 -0.54 -0.31 0.14 0.69 -0.07 1.02 -2.08 0.11 0.22 -1.34 0.43 1.05 -0.3 0.64 -2.78 -2.23 0.76 1.11 1.59 0.74 0.54 1.14
-1.7 -3.11 -6.25 -3.05 -2.68 -2.48 -0.3 -2.07 - -1.96 -0.3 0.31 -0.38 1.36 0.61 -1.35 0.73 0.75 -0.42 0.23 -0.21 0.58 0.78 -0.78 -0.35 -1.05 -1.03 0.69 1.24 0.86 0.96 0.64 1.35
- - - -3.25 - - -2.51 - - - 1.63 -1.46 -0.79 1.66 2.17 1.04 1.23 2.08 0.39 0.67 0.36 0.31 1.7 - - -3.2 -2.79 0.22 - -2.45 -0.82 0.47 -2.44
-4.76 - -1.5 - -4.03 -4.26 -0.18 -2.29 -4.45 - 0.82 -0.06 0.67 1.51 -0.59 0.67 1.16 1.27 1.28 0.18 0.89 -0.13 -0.08 0.56 0.63 -2.92 -2.59 -0.13 0.09 0.73 0.67 -0.23 -0.61
-5.97 -4.53 -4.85 -4.85 -3.86 - -0.07 -1.75 -4.19 -5.0 -0.38 -0.44 0.06 1.19 -2.08 -0.18 1.4 -1.06 -0.53 -0.86 -1.56 0.18 0.8 0.88 -0.46 -1.97 -2.04 1.0 1.57 1.22 1.08 0.73 1.93
- - - - - - - - - - 0.76 1.24 1.12 - 1.34 1.84 -0.08 0.41 0.12 -0.17 -0.14 1.15 -2.78 - 1.7 -4.57 -3.18 0.33 -0.01 -0.08 1.66 1.5 -0.83
-0.67 -0.58 -0.17 -0.24 -0.0 0.21 0.08 0.02 0.1 -0.03 -0.6 -0.2 -0.82 0.14 -0.63 -0.14 0.19 0.12 -0.21 -0.63 -0.49 -0.16 -0.14 -0.44 -0.3 -0.75 -0.54 0.44 0.97 1.02 0.64 0.45 0.68
-5.01 -2.94 -6.51 - -1.34 - 1.12 -1.97 -2.8 -5.37 0.54 -0.25 0.02 0.63 0.17 -0.2 1.1 0.08 -0.56 0.5 0.05 0.42 1.34 -0.25 0.77 -0.83 -1.11 0.91 1.01 0.67 0.59 -0.03 0.3
- - - - - - 0.78 - - - -0.59 0.3 0.12 -0.4 1.19 0.22 0.97 -2.32 -1.43 0.76 0.45 0.77 1.39 -1.06 -0.36 -3.15 -3.17 1.3 0.87 0.92 0.98 1.05 1.31
- - - - - - 1.87 - - - - - 1.87 - - 4.43 -1.59 - - - - - - - - - - - - - - - 1.95
-2.65 -3.11 -3.41 -3.98 - - 0.68 - - - 0.54 0.52 0.96 -2.28 -0.02 -1.37 1.31 -0.28 -0.05 0.06 -0.27 0.74 0.7 -0.86 0.56 -3.77 -4.23 0.31 1.3 1.32 0.99 0.81 1.6
-1.87 -4.19 - -3.53 -1.89 -2.52 0.78 - -2.58 - 0.83 -0.81 -3.47 1.32 0.71 -0.89 1.51 0.6 - -0.02 -0.45 0.6 -0.51 -2.64 0.11 -4.7 -4.84 0.76 1.12 1.35 1.62 0.96 1.07
-1.55 -1.5 -1.35 -0.74 -0.89 -2.27 0.1 -1.82 -1.29 -1.91 0.23 0.26 -0.97 0.52 0.53 -0.06 0.57 0.14 0.05 0.49 0.29 0.12 -0.25 -2.22 -0.22 -4.46 -3.1 0.8 0.7 0.97 1.12 1.5 1.06
-2.63 -3.88 -3.6 -2.51 -1.47 - -0.17 -3.06 -4.1 -3.42 1.37 0.53 -0.04 1.2 0.62 0.53 1.49 -0.09 1.78 -0.25 0.34 0.41 -1.35 -2.0 0.07 -2.82 -2.75 0.11 0.16 0.66 0.56 0.41 0.63
-7.08 -7.55 -6.46 -7.79 -7.34 - 0.43 - - - 0.2 -0.13 -0.25 0.36 0.21 -0.11 1.14 -0.5 0.78 0.77 0.9 0.78 0.66 -0.19 0.34 -0.89 -2.18 0.5 0.67 1.21 0.62 0.89 1.17
- - - - - - - - - - - - - - - 4.49 -1.35 - - - - - - - - - - - 0.75 - 1.36 1.42 1.65
-0.85 -0.32 -0.42 -0.67 -0.48 0.09 0.5 0.26 -0.37 -0.34 -0.16 -0.3 0.29 -0.27 -0.12 -0.3 0.12 0.55 -0.1 -0.22 -0.04 0.1 0.0 0.42 0.06 -0.39 -0.32 0.12 0.36 0.44 0.16 0.21 0.57
- -7.24 - - - - -0.31 - - - -1.24 0.14 -0.04 1.26 -0.12 0.76 0.73 -0.12 -0.67 -0.14 -0.42 1.06 1.5 -0.61 -0.6 -1.1 -0.93 0.74 1.68 1.25 0.94 0.24 1.17
- -3.43 -5.02 - - -2.33 -3.22 -0.9 -1.38 0.1 0.22 0.7 0.56 0.67 1.62 1.16 -1.16 -0.09 -0.53 -0.26 -1.01 0.73 - -3.42 2.12 -1.11 -0.24 0.54 -0.46 0.29 1.08 1.29 -0.66
-2.09 -1.14 -1.8 -1.28 -1.52 -0.89 0.79 -1.92 -1.6 -1.83 -0.32 0.3 0.3 0.14 -0.34 -0.41 1.16 0.1 -0.18 -0.26 -0.13 0.18 0.11 0.99 -0.1 -0.86 -0.6 0.65 0.74 0.93 0.54 0.71 0.75
-8.23 - - - -7.52 - 0.5 - - -7.6 -1.33 0.67 -0.5 1.23 0.31 -0.23 0.86 -0.77 -0.45 -0.12 -0.47 0.69 0.5 -1.21 -0.59 -1.23 -1.13 0.82 1.55 1.59 0.94 1.18 1.48
- -5.8 - - -6.17 - 0.66 - -5.4 - 0.04 0.49 -0.24 0.0 0.65 0.12 0.48 -0.6 -0.12 0.46 0.15 0.62 0.94 -0.35 -0.32 -0.7 -1.42 1.21 0.91 1.04 1.29 0.99 1.17
-1.1 -3.42 -1.7 -2.05 -1.21 -2.65 0.28 -5.35 -3.85 -4.54 0.94 0.14 0.85 0.47 1.73 -0.21 0.96 1.34 0.53 1.32 0.67 -0.68 0.69 -2.11 0.6 -2.75 -2.92 0.01 -1.21 -0.42 -0.11 0.05 0.2
-5.29 -6.07 -4.87 -4.2 -5.52 -7.01 -0.14 -6.81 -5.4 -4.3 0.07 0.1 -1.33 0.25 0.56 -0.49 1.09 0.33 -0.18 0.46 0.02 0.06 0.04 -2.09 -0.66 -0.91 -1.18 1.12 1.06 1.37 1.33 1.88 1.22
- - - - - - - - - - 0.64 -1.73 0.66 - -0.72 1.84 -0.28 -1.06 1.16 0.77 1.02 1.45 0.86 -0.39 1.96 -3.37 -2.64 -0.2 0.22 -0.58 1.4 1.34 -0.35
- - - - - - - -4.23 -7.67 -7.17 0.44 0.05 1.15 -1.06 2.24 2.0 -1.34 0.14 -0.01 0.1 -0.32 0.79 -3.27 -4.99 1.68 -2.24 -1.14 0.7 -0.4 0.46 1.19 1.25 -0.72
-1.25 -0.43 -1.18 -0.91 -1.26 -0.15 0.4 -1.03 -0.85 -0.38 -0.53 0.71 0.74 -0.06 -0.7 -0.63 0.21 -0.46 -0.35 -0.66 -0.63 0.49 0.45 0.91 -0.15 -1.61 -0.94 0.41 0.86 0.99 0.46 0.16 1.16
-6.66 -7.2 -5.33 -4.52 -2.27 -6.13 -1.87 -5.85 -9.72 - 1.63 -0.78 1.2 0.8 2.99 -0.45 1.42 1.07 0.57 0.32 0.4 0.34 0.56 -0.14 0.65 -1.02 -0.99 -2.99 -3.03 -2.38 -3.21 -2.49 -1.97
-0.92 -0.66 -0.52 -0.48 -0.13 0.1 -0.14 -0.3 -0.25 -0.23 -0.2 -0.06 -0.58 -0.42 0.42 -0.46 0.36 0.16 -0.21 -0.3 -0.37 -0.45 0.01 -0.51 -0.6 -1.43 -0.83 0.73 0.8 0.94 0.87 0.97 0.8
- -5.62 -4.48 -3.65 -2.92 -3.16 0.4 -1.98 - -4.57 -0.02 0.63 -1.44 0.37 -0.14 0.13 0.72 1.03 0.48 0.66 0.89 0.11 -0.07 0.12 -1.91 -2.5 -4.34 0.62 1.47 1.25 1.18 0.45 1.23
-3.19 -1.92 -6.92 -5.47 -5.95 - -1.72 - -4.4 -6.66 0.34 0.62 0.24 -2.1 1.49 1.84 -0.69 0.16 0.54 0.51 0.58 0.82 -0.29 -0.66 0.84 -0.98 -1.14 1.04 0.92 0.07 1.19 0.61 -0.48
-0.94 -0.75 -0.21 -0.37 -0.13 0.12 0.21 -0.08 -0.33 0.14 -0.24 0.3 -0.54 -0.05 -0.72 -0.29 0.65 -0.35 -0.31 -0.06 -0.18 0.33 -0.74 -0.26 0.08 -0.54 -0.18 0.4 0.66 0.64 0.34 0.48 0.72
- - - - - - -1.95 - - - -0.37 -0.1 0.02 -0.86 1.91 -0.2 0.49 -0.49 0.61 1.12 0.9 -0.21 0.04 -2.63 -1.07 -5.75 -6.6 1.67 1.22 1.2 0.93 1.8 0.47
-6.32 -3.6 -5.81 - - -5.41 -3.29 -5.1 - -2.87 -1.24 -0.12 1.28 -4.25 1.25 3.09 -0.93 -0.59 0.22 0.49 0.69 0.23 -0.78 -4.5 1.43 -2.67 -1.23 0.81 -0.11 -0.4 0.8 0.5 -0.24
-2.89 -1.37 -4.73 -2.04 -2.32 -0.91 -4.14 -1.01 -1.47 -1.47 -0.83 0.81 1.06 -1.71 1.53 1.3 -1.72 -0.64 -0.43 -0.32 -0.51 0.25 -0.8 -2.45 1.63 0.17 0.02 0.96 -0.26 0.13 1.34 1.43 -0.62
-2.03 -1.76 -1.84 -0.94 -1.1 -2.3 -0.39 -1.08 -0.9 -1.59 -0.08 0.36 0.17 0.29 1.53 0.96 -0.08 -0.34 0.46 0.44 0.36 0.27 -0.4 -0.13 0.38 -1.11 -0.91 0.51 0.42 0.5 0.35 0.53 0.74
-7.22 -8.37 -8.65 -5.12 -10.68 - 0.64 -8.75 -7.2 -5.46 0.14 0.92 -0.01 0.52 1.23 0.2 0.95 0.03 0.52 0.99 0.69 0.57 0.43 -0.97 0.15 -3.04 -2.92 0.45 0.35 0.71 0.6 1.35 0.53
-3.08 -2.73 -2.44 -4.73 -2.68 - -0.16 -2.21 -2.67 - 1.13 0.61 -0.34 1.79 0.45 -0.79 0.93 2.03 0.36 0.15 0.18 -0.08 0.27 -0.07 -0.48 -3.28 -3.44 0.48 0.38 0.1 0.41 0.53 0.12
-1.91 -2.0 -2.14 -2.01 -2.49 -2.97 0.45 -1.68 -2.06 -1.88 -0.69 0.58 0.43 0.13 1.16 0.54 -0.14 -0.31 0.15 0.33 0.08 1.07 0.99 0.51 0.19 -0.89 -1.16 0.42 0.28 0.57 0.43 0.49 0.78
-7.56 -5.53 -6.23 -6.34 -8.4 -8.18 -1.33 - - - -0.28 0.81 0.68 -1.39 1.63 1.35 -0.4 -0.94 0.4 0.45 0.85 0.89 0.54 -1.13 1.29 -3.05 -2.46 1.21 0.86 -0.11 1.11 1.0 -0.21
- - -1.02 - - - - - - - -1.18 -0.23 1.52 - -1.96 1.49 -3.4 0.34 -0.77 -2.64 0.3 -0.82 0.85 -3.8 2.01 0.73 0.77 1.69 -4.38 - 2.09 2.19 -
-0.7 -0.93 -0.58 -0.16 0.1 -0.55 0.34 -0.56 -0.93 -0.13 -0.43 0.39 -0.98 0.35 -0.02 -0.04 0.22 -0.73 -0.16 0.27 -0.0 0.29 -0.25 -0.32 -0.53 -0.73 -0.54 0.51 0.81 0.82 0.54 0.44 0.93
- -3.48 -5.53 -5.79 -3.53 - -0.43 - - - -0.96 0.35 0.09 0.25 0.36 -0.09 0.88 -0.4 -0.03 -0.1 -1.26 0.72 0.58 0.68 0.82 -1.73 -0.95 0.9 1.14 1.64 0.94 0.92 1.34
-1.77 -3.22 -2.36 -5.43 -0.66 - -0.55 0.07 -0.75 - -0.19 -0.42 -1.51 -0.18 -1.97 -3.14 1.34 -0.86 -1.73 -0.43 -2.04 0.15 2.13 -3.3 -0.79 -2.9 -2.99 1.25 1.48 1.55 1.3 0.86 1.6
- -3.71 - - - - - -2.64 - - -0.54 -0.8 -0.07 - -1.79 2.12 -1.17 0.29 0.18 -1.88 -0.27 1.89 -1.91 -2.04 2.71 -1.14 -1.46 1.42 -0.45 - 1.97 1.49 -1.77
- - - - -11.78 - -11.5 -8.3 -8.9 -7.8 0.23 -6.02 1.63 -7.15 2.18 2.31 -1.55 0.68 1.23 0.37 1.29 -4.19 -4.07 -5.17 1.48 -2.22 -1.55 -0.05 0.62 1.17 0.54 0.19 -1.38
-2.05 -2.43 -1.86 -1.06 -1.33 -2.4 0.06 -2.03 -1.97 -2.09 0.16 0.25 -1.1 0.38 0.6 -0.06 0.76 0.14 0.04 0.57 0.24 -0.16 -0.24 -1.86 -0.47 -4.3 -3.06 0.87 0.9 1.15 1.21 1.58 1.18
-4.41 -3.9 -4.05 -3.07 -3.1 -4.75 0.14 -4.48 -3.95 -3.66 0.01 0.49 -0.34 0.48 0.9 -0.63 1.13 -0.01 -0.2 0.67 0.27 0.33 0.09 -1.38 -0.13 -4.54 -3.85 0.91 0.9 1.24 1.15 1.59 1.16
- -7.08 -7.83 -5.44 -7.39 - -3.0 -7.45 -9.41 - 1.32 -0.53 1.71 -0.1 3.07 -0.19 1.17 0.41 0.5 0.33 0.29 0.78 1.36 0.05 0.53 -1.26 -1.11 -2.74 -2.89 -1.99 -2.8 -3.1 -2.03
- - - -1.68 -3.2 - -2.93 - - - 1.64 -0.33 1.48 -0.32 3.03 -1.0 2.12 1.49 0.06 0.32 -0.39 -0.08 0.55 -0.16 -0.87 -1.41 -1.64 -3.23 -2.93 -0.88 -1.09 - -1.85
-4.32 -2.48 - -4.03 -3.42 - -1.27 -3.09 -2.76 - 1.57 1.34 -2.73 1.89 -0.24 -1.16 1.34 1.85 -0.27 0.62 0.86 -0.01 -0.36 -2.49 0.38 -3.36 -2.68 -0.17 0.61 0.62 0.65 -0.69 0.41
- - - - - - - -2.46 - - -4.15 -1.61 2.0 -0.38 2.52 -3.28 -3.96 - - - -1.67 0.61 -0.99 -1.86 0.94 0.59 0.57 2.47 -2.44 - 2.19 1.99 -
-2.9 -1.73 -5.4 -5.13 -5.19 -8.06 -1.92 -5.3 -5.71 -5.54 0.45 0.51 -0.19 -1.13 1.61 1.4 -0.82 -0.03 0.83 0.78 0.82 0.87 0.13 -0.97 0.84 -0.94 -0.93 1.11 0.81 -0.13 1.17 0.59 -0.6
- - - - - - -0.49 - -2.14 - 0.72 0.02 -0.35 -0.67 2.35 0.38 0.69 2.42 1.49 -0.07 2.02 0.74 -1.56 - 0.85 -1.98 -2.16 -1.03 -0.34 -1.35 -1.37 - -1.15
- -5.8 - - - - -0.6 - - - 0.01 -0.15 -1.8 - -1.72 -1.23 1.49 -0.65 -2.76 -0.5 -1.79 -0.3 -0.85 - -2.69 -1.57 -0.25 1.74 1.64 1.94 1.55 1.96 2.32
-0.59 -0.68 -0.04 -0.62 -0.24 -0.32 0.61 0.33 -0.27 -0.78 -0.34 0.51 -0.04 0.22 0.04 -0.24 0.02 -0.03 -0.02 0.29 0.05 0.62 -0.25 0.37 -0.19 -0.46 -0.35 0.11 0.25 0.31 -0.07 0.09 0.27
-2.47 -1.5 -2.28 -1.78 -1.12 - 0.77 -1.67 -1.68 - -0.52 0.48 -0.71 -0.98 0.69 -0.41 1.14 0.67 0.45 0.39 0.62 0.01 0.81 -0.42 0.17 -3.46 -3.81 -0.05 0.99 1.09 0.52 1.18 1.02
- - -4.55 -3.47 - - 0.87 - -3.51 - 0.24 0.75 -0.33 -0.36 0.66 0.57 0.84 -0.48 - -0.46 -0.43 1.38 0.82 0.4 0.05 -1.37 -2.09 1.35 0.8 1.33 1.08 0.78 0.59
-1.97 -1.96 -2.0 -2.26 -3.02 -2.24 -0.8 -2.1 -2.78 -1.66 -0.54 1.11 -0.11 1.66 -0.69 -0.71 0.66 -1.05 -0.68 -1.46 -1.07 1.52 0.36 -0.6 0.68 -2.98 -2.08 0.48 0.79 1.55 0.72 0.65 1.44
-3.17 -3.7 -4.17 -2.49 -3.13 -4.62 0.23 -5.86 -3.99 -4.41 -0.03 0.4 -0.37 0.57 0.76 0.05 0.72 -0.14 -0.27 0.88 0.57 0.22 0.17 -1.3 -0.4 -3.97 -2.86 0.95 0.92 1.15 1.03 1.59 1.24
- - - - - - - - - - -2.24 -1.83 0.91 - 1.09 2.22 -1.79 -2.74 0.74 -0.59 0.12 - -1.94 - 0.54 0.78 0.8 1.92 -1.4 -2.82 2.17 2.51 -1.76
-2.03 -1.87 -2.47 -1.9 -2.38 -1.75 -1.11 -2.8 -3.55 -1.76 -0.01 0.1 -0.1 -1.49 1.82 1.56 -0.91 0.3 0.39 0.01 0.52 0.63 -0.57 -1.94 0.91 -2.01 -1.75 1.26 1.0 0.02 1.24 0.73 -0.15
- -6.51 -7.21 -8.2 -8.72 - -1.08 - - - -0.59 0.74 1.07 -2.18 1.57 2.11 -1.01 0.13 0.9 0.4 0.83 1.04 0.64 -0.34 0.96 -2.34 -2.21 0.61 0.46 -0.65 0.87 0.3 -0.63
-0.34 -2.19 -1.44 -3.67 -1.11 -5.68 -0.05 -0.24 0.1 -5.91 -1.05 0.58 -1.97 -0.61 0.32 0.22 0.97 0.04 -0.04 0.44 -0.16 0.19 -0.11 -1.23 -0.28 -4.12 -4.76 0.96 1.37 1.54 0.98 0.7 1.15
- -5.12 - - - - 0.02 - - - -1.67 0.05 -0.64 -0.57 -0.57 -0.95 1.05 -2.37 -0.36 0.52 -0.01 0.7 1.49 -0.04 0.4 -1.45 -0.81 1.27 1.22 1.82 1.12 0.91 1.4
- - - - - - - - - - - - - - - 4.98 0.55 - - - - - - - - - - - - - - - -
-0.64 -0.43 -0.36 -0.56 -0.34 -0.14 0.38 -0.26 -0.17 0.12 0.07 0.23 -0.26 -0.13 -0.17 -0.01 0.19 0.42 -0.15 -0.12 -0.08 0.1 -0.09 -0.32 -0.42 -0.78 -0.56 0.29 0.54 0.68 0.42 0.37 0.6

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.