Heatmap: Cluster_88 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-1.77 -1.15 -5.29 -2.09 -2.16 -2.05 -2.94 - - - - - - -2.89 - - 0.72 - - - - - 0.99 - -1.85 0.19 0.2 2.93 2.12 1.5 1.32 2.24 1.61
-0.71 -0.94 -1.82 -2.37 -3.88 -3.47 -0.77 -4.74 -3.53 -0.75 -1.35 0.77 -1.06 -0.89 0.28 -0.59 0.55 -1.12 -0.6 -0.59 -0.43 -0.33 -1.31 -3.56 0.39 0.32 0.85 1.89 1.23 1.09 1.06 1.42 1.22
- - - -0.73 -1.61 - -1.32 - -0.31 - 0.63 -0.31 -0.37 0.7 1.29 - 1.75 2.09 - 0.6 0.63 0.24 - - 0.73 -1.89 -1.63 0.3 0.98 1.28 0.61 0.17 0.33
- - - - -2.99 - -0.38 - - - - - - 0.64 - - 1.64 - - -0.78 - 0.57 -0.81 - - -0.82 -0.45 1.08 2.24 2.83 1.59 1.68 1.73
-1.93 -1.44 - -3.01 -1.48 -1.38 - -0.49 - -1.32 - - -2.3 - - - 0.98 - - - - -0.62 - - - 0.43 0.42 0.76 2.4 2.49 1.21 1.66 2.77
-2.37 -2.38 -4.74 -4.19 -4.16 - -0.6 -4.06 -3.51 -1.35 0.11 -0.17 -1.19 0.38 0.22 -0.49 0.65 0.08 -0.78 0.02 -0.46 0.38 0.1 -0.82 -0.42 -1.23 -1.55 1.19 1.58 1.37 1.12 1.33 1.9
-1.88 -2.25 -3.49 -2.42 -3.67 -5.19 -1.4 -5.88 -4.07 -4.9 -2.75 -1.45 -2.08 -1.44 -2.27 -2.36 -0.16 -1.89 -2.0 -1.9 -1.18 -1.18 -0.84 -1.46 -1.22 -0.83 -0.82 2.12 2.03 1.98 2.19 2.08 1.97
-4.2 -4.8 -4.07 -4.92 - - 0.53 -4.41 - - -0.04 0.28 -0.44 1.04 -0.5 -0.34 1.33 0.29 -0.1 -2.49 -0.02 -0.08 0.37 -0.13 -0.47 -0.88 -1.01 1.33 1.44 0.98 1.27 1.14 1.19
- - - - - - -0.76 - -0.74 - 0.23 - -0.8 - - - 1.85 0.33 - - - -0.84 - - - -3.27 -0.79 0.61 2.98 2.23 2.01 1.98 0.92
- - - - - - - - - - - 0.27 - - - - 0.67 - - - - - - - - -2.99 -0.55 1.86 2.02 2.17 2.09 2.66 2.72
-7.85 -9.29 -6.99 -7.69 -5.93 -5.71 -9.43 -5.63 -3.71 -4.75 -0.27 -3.65 -1.27 -3.24 -3.12 -0.48 0.43 0.69 2.0 0.74 1.72 -4.3 1.08 1.0 1.72 -1.06 -1.67 1.1 1.48 1.12 -0.54 0.34 0.42
-1.17 -0.67 -0.59 -0.41 -0.74 -2.16 -0.1 -0.8 -1.08 -0.68 -0.3 -0.18 -0.63 -0.3 0.71 -0.19 0.51 -0.6 -0.0 0.31 -0.17 -0.08 -0.9 -1.06 0.0 0.33 0.36 0.63 1.13 0.96 0.71 0.83 0.69
-12.54 -7.15 -11.02 -5.98 -6.09 -5.54 -5.57 - -11.13 -9.27 0.26 -2.1 -1.13 -1.54 -2.4 -0.2 0.76 0.1 1.21 -0.01 0.77 -2.82 0.14 -1.15 1.73 -0.46 -0.29 1.73 1.7 1.6 0.95 0.98 0.85
- - - - - - -0.83 - - - - - -2.57 - 0.61 - 1.42 - -1.54 0.72 1.59 -1.53 -0.9 - - -0.63 -0.43 2.05 1.55 2.32 1.34 1.4 1.84
- - - - - - - - - - -0.17 - 0.69 -4.93 -1.16 0.4 0.63 0.14 0.17 -0.54 -0.22 -3.5 -1.08 -3.96 2.21 -1.75 -1.64 1.37 2.46 1.6 0.63 0.32 1.84
-3.03 -3.76 -1.91 -2.74 -0.62 - -2.98 -1.84 -2.88 - 0.92 0.74 0.14 -1.95 -0.95 -1.04 1.59 0.58 0.71 0.12 0.15 0.39 0.09 -0.04 0.78 -2.15 -1.43 0.87 0.26 1.05 0.56 1.43 1.01
-1.74 -2.17 -2.44 -3.44 -4.98 -2.1 -0.78 -0.3 -1.24 -2.35 0.21 -0.37 -3.59 -2.53 1.08 -2.62 0.53 -2.46 -1.24 -0.46 -0.28 -1.78 -2.07 -1.79 -3.5 0.66 0.89 1.74 1.54 1.36 1.26 1.15 2.03
-2.5 -2.97 -1.23 -1.78 -2.16 - 0.34 -2.28 - - -0.15 1.61 -1.49 1.43 0.17 -0.51 1.58 1.85 -0.45 -1.52 - 1.08 -1.54 -1.67 -1.38 -1.22 -1.17 -0.01 0.38 1.07 0.69 -0.09 1.49
-1.55 -2.73 -1.78 -1.53 -0.61 -3.13 -0.54 -2.02 -0.87 -3.4 -1.41 -2.97 -1.71 -0.38 -2.96 -3.06 1.07 -0.89 -1.41 -2.06 -1.45 -1.26 -2.09 -0.22 -1.35 -1.3 -1.47 1.37 1.83 2.26 1.75 1.92 1.73
- -1.04 - -0.51 - - 0.25 - - - 0.4 -0.31 0.81 -0.31 - - 1.17 - -0.34 - - -1.4 - -0.56 - -1.33 -2.58 2.54 2.06 1.71 1.02 2.37 -0.28
- - -1.96 - - - -0.13 - 0.89 - - - -1.49 -0.43 - - 1.98 -0.36 -0.46 - - - - -0.68 -0.39 -2.62 -2.66 1.42 1.7 2.12 1.62 2.3 1.78
-1.89 - -3.22 -3.0 -2.24 -1.76 -1.66 - -3.62 - 0.0 0.69 -1.1 -2.21 -0.04 -0.98 1.84 0.18 0.08 -0.72 -0.69 0.38 1.47 - -0.37 0.3 0.24 0.9 1.32 1.25 0.73 0.53 1.45
-1.5 -0.94 -1.32 -1.83 -0.69 -2.42 -2.31 -1.56 -0.59 - -2.26 - - 0.52 - -2.38 0.71 -2.22 -2.32 -1.39 -1.35 -2.31 -0.83 -2.54 -2.25 -0.67 -1.18 2.63 1.17 1.06 1.81 2.48 1.57
-7.07 -5.69 -4.96 -6.08 -5.96 -5.5 -0.0 -5.66 - - 0.44 0.7 -1.27 0.09 -0.63 -0.72 0.29 0.52 -0.12 0.4 -0.94 0.58 -0.65 -1.27 0.06 -0.68 -0.87 1.89 0.53 0.7 0.98 1.89 1.81
- - - -4.49 -1.58 - -1.32 - - -2.31 0.48 -0.88 -2.96 -1.88 - -0.38 2.61 1.01 -0.32 -0.39 -1.94 -1.23 -0.41 -2.13 - -1.82 -1.77 1.18 1.94 2.07 0.33 1.38 1.49
- - - - - - -1.32 - - - - -0.27 - - -0.26 - 2.26 - 1.03 - 2.14 -0.03 -0.38 0.81 -0.22 -1.06 -1.51 1.71 2.09 0.89 1.28 0.86 -0.24
- - - - - - -0.0 - - - -0.31 - -0.35 -0.28 -0.28 -0.37 1.44 0.38 - - - 0.66 0.18 - -1.24 -2.54 -2.32 0.43 1.64 2.59 1.84 2.09 1.08
-2.4 -2.82 -3.07 -3.56 -2.5 - -1.55 - - - -1.56 -1.53 -0.79 -0.2 -0.94 - 2.15 -0.86 - - - -0.95 0.94 -2.78 -0.16 -0.33 -0.74 1.96 1.5 1.8 1.82 1.65 1.35
-4.16 -2.33 -3.77 - -3.42 - -1.78 -3.94 -2.96 - - -3.1 -2.87 -4.31 - -2.53 0.14 - -3.12 - - -2.72 0.62 -1.29 -3.05 0.29 0.55 2.29 2.16 1.64 2.13 2.48 1.62
-2.23 -3.02 - -3.94 -4.4 - -0.88 -2.01 - -0.52 -0.82 0.42 -2.21 -1.15 0.17 -1.24 1.1 -2.08 -2.18 0.07 -1.22 0.01 1.63 - -2.12 -3.49 -2.63 1.66 1.55 1.68 1.63 1.5 1.61
-2.87 -0.59 -4.74 -4.58 -5.05 -6.76 -3.1 -6.19 - -4.31 -1.92 -4.28 -3.14 - - -4.36 0.41 -3.06 -0.82 -2.37 -3.08 -6.7 -2.72 -4.53 -2.17 0.82 0.31 2.59 1.99 1.56 1.87 1.98 2.36
-1.25 -0.54 -2.03 -0.96 -2.38 -1.28 1.07 -1.17 -0.55 -3.25 -1.15 -0.13 -0.33 0.31 -0.73 -1.91 1.28 - -1.85 - -2.88 -1.13 1.82 -0.68 -0.7 -1.86 -1.97 -0.39 1.56 2.43 0.48 0.14 1.44
-2.96 -3.52 - -3.85 -5.31 - 0.09 - - - 0.54 0.15 -0.81 0.56 -0.06 -3.15 1.62 1.82 0.27 0.46 0.09 0.29 -0.38 0.05 -1.44 -2.97 -2.46 0.89 1.01 1.0 1.07 0.74 1.23
-2.06 -0.38 -2.07 -0.59 -0.41 - -0.84 -0.79 -0.19 -5.42 0.22 0.2 0.71 0.59 -1.47 -0.19 1.58 -0.55 0.7 -1.31 0.46 -1.67 -0.11 -1.24 0.7 -3.27 -2.79 0.68 1.27 0.82 0.89 0.73 0.77
-3.91 -1.77 -4.41 -2.3 -4.65 -0.35 -2.88 -3.75 -2.25 -4.46 -2.36 -1.26 -2.9 -1.25 - - 1.27 -1.77 - -2.93 - -1.52 -2.96 - - -1.33 -1.69 2.1 2.47 1.98 2.55 1.57 1.74
- -5.02 -4.72 - - - -3.45 - - - -1.21 - - 0.47 -2.39 - 1.28 -1.15 - - - -3.33 -1.34 -1.47 -2.35 -1.25 -2.13 2.87 1.21 1.65 1.83 2.74 1.71
-1.76 -1.92 -2.8 -2.01 -3.39 -2.32 -2.49 -0.68 -1.41 -2.52 -0.39 -0.22 -3.72 -3.38 -2.64 -1.66 0.65 -4.89 -0.87 -2.36 -1.64 -1.47 -5.09 -1.31 -1.12 -0.03 0.2 1.88 1.52 1.95 1.82 2.11 1.94
-0.65 - -0.38 - - - - - - -0.68 - 1.41 - 0.42 - - 1.11 0.49 - - - -0.68 1.3 0.17 - -0.11 -1.33 1.36 2.22 1.96 0.91 1.82 0.44
-1.92 -1.74 -3.48 -2.49 -3.49 -2.61 -0.16 -3.07 -2.64 -2.48 -0.36 0.08 0.63 -1.33 0.45 -1.67 1.85 -0.23 0.42 0.25 0.49 -0.01 0.38 0.32 0.1 -1.71 -1.95 0.76 0.88 1.27 1.13 0.93 0.58
-2.85 -3.58 -0.78 -3.57 -0.95 -1.99 -1.81 -2.55 -1.19 - -1.42 - - - - - 2.29 - - -0.55 -1.84 -1.55 - -2.03 - -2.86 -3.13 1.37 2.32 2.04 2.34 1.58 1.86
-5.74 -5.07 -3.79 -5.01 -5.08 - -0.22 -3.94 -6.07 -2.44 -2.65 0.13 1.24 0.33 0.04 1.41 0.78 -0.01 0.55 -1.3 0.36 0.54 0.02 0.51 0.86 -2.04 -1.68 0.45 1.15 1.05 0.9 0.41 1.12
- - - - - - - - - - - - - - - - 3.15 - - - - - - - - -3.88 - 1.92 1.35 2.44 1.7 2.43 1.87
-0.26 -3.73 -4.25 -2.61 -2.66 -1.06 -0.56 -1.78 -1.75 -1.83 1.02 0.18 -2.01 0.58 1.58 -2.02 1.88 0.88 -1.96 -2.02 -0.25 0.33 0.07 - 0.85 -1.72 -2.46 1.03 0.53 0.8 0.77 0.89 0.39
-3.55 -0.72 -1.82 -4.42 -1.99 -2.02 0.73 -0.92 -2.82 -0.96 -0.84 0.18 -1.29 0.51 -0.22 - 2.05 0.59 -0.26 -1.9 -0.87 -0.27 1.97 - -0.77 -0.25 -0.73 0.85 0.7 0.6 0.1 0.97 1.14
-1.83 -2.21 -2.45 -2.18 -2.26 -3.69 -0.35 -3.21 -3.17 -1.91 -0.34 -0.1 -0.38 0.04 0.43 -3.01 0.8 0.3 -1.54 -0.19 -0.95 -0.09 0.8 0.31 -0.73 -0.77 -0.74 1.63 1.25 1.27 1.46 1.35 0.95
-2.72 -3.63 -1.65 - -3.55 - -0.68 - -4.24 -2.08 -0.2 0.57 -0.29 -1.65 -0.23 -1.73 2.27 -0.16 -0.68 -0.16 -1.29 0.04 -0.35 -1.9 -1.19 -1.8 -2.47 1.55 1.2 1.31 0.6 2.21 1.21
-2.45 -3.55 -1.56 -2.23 0.16 - 0.63 -1.92 0.79 - -0.63 -1.39 -1.44 -1.38 0.27 - 0.79 -1.3 0.64 -0.89 - -1.09 - -0.31 0.52 -2.76 -2.46 0.33 1.99 1.14 1.77 2.07 1.14
- -1.26 -2.78 -2.95 -2.93 -4.1 -1.7 -3.56 -3.38 - - -3.98 - - -3.97 - 0.86 -2.31 - - - -3.48 -1.28 - - -2.6 -3.64 2.41 1.46 1.48 2.8 2.92 1.73
-0.85 -2.18 -1.14 -1.84 -1.28 -5.54 -0.34 -1.55 -0.56 -3.81 0.42 -0.53 -1.32 0.42 0.64 -1.04 1.78 0.97 -0.02 -0.61 -0.29 -0.8 -1.07 -2.12 -0.67 -5.19 -7.06 1.24 1.08 1.49 0.96 1.14 1.1
- - - -4.42 - - 0.5 -2.16 - - -0.22 -0.63 -0.45 1.66 -0.63 -1.39 2.24 - -0.66 0.36 -0.23 -0.18 0.06 0.76 -2.59 -3.5 -1.94 1.25 1.59 1.64 0.76 0.66 0.54
- - - - - - - - - - - - - - - - 2.22 - - - - - -0.0 - - -2.84 -2.83 1.85 1.78 2.48 2.34 2.1 2.33
-2.25 -2.47 -2.0 -4.93 -3.44 -2.36 -0.49 -3.0 - - -1.67 -1.57 -4.21 0.94 -1.14 -2.24 1.33 -2.07 -1.59 -1.66 -1.62 -1.86 0.54 -1.08 -1.52 -0.53 -1.75 2.05 1.77 1.65 1.83 1.62 1.74
- - - - - - - - - - - -0.74 - 1.85 - 1.5 1.84 - -0.76 - 0.79 0.25 -0.86 - - -2.98 -3.17 1.12 1.63 2.33 1.51 0.89 1.62
-1.13 -0.96 -1.08 0.17 -0.73 -0.26 -0.4 -1.23 -1.81 -1.3 -1.89 -1.0 -1.69 -2.53 0.35 -1.27 1.34 -1.06 -1.07 -2.15 -1.59 -0.33 -0.43 0.97 -0.88 -1.37 -1.34 1.74 0.74 1.16 0.93 1.91 1.26
-0.72 -2.05 - - -3.76 - -1.19 -0.73 - -0.09 -0.56 -0.14 -1.21 -0.13 2.07 - 0.99 -0.06 - 1.54 - -0.09 0.89 1.38 - -4.48 -2.19 1.95 0.7 -1.26 0.94 0.44 1.17
-1.47 -2.17 -1.5 -2.31 -2.22 -2.37 -1.83 -2.62 -2.55 -1.52 -0.02 -1.49 -1.03 -1.84 -1.6 -0.51 1.87 -0.18 0.36 -0.4 -0.32 -1.52 -1.13 -2.09 -1.8 -0.04 -0.1 1.21 1.43 1.72 1.46 1.28 1.69
- - - - - - 0.24 - - - -1.8 - -3.02 -1.72 -2.94 -0.37 0.22 - - -3.04 - -1.08 1.25 - - -0.15 -0.35 1.8 2.32 2.17 2.1 1.88 1.78
- - - - -3.0 - -0.33 - - - -0.09 0.96 0.12 -1.62 0.38 -0.71 1.76 -1.55 -0.65 -0.13 0.64 -0.13 -1.74 0.45 0.74 -0.49 -1.21 1.29 0.94 1.7 0.76 0.49 1.57
- - -0.49 -0.75 -1.33 - 1.18 - - - -0.92 0.03 -1.04 0.04 1.21 1.12 1.71 0.11 - 1.12 1.15 0.27 1.09 - - - - 0.53 0.07 0.75 1.37 0.05 0.67
- - - - -6.38 - - -2.89 - - - - - - - - -0.05 -2.38 - - - - - - - - - 2.6 1.49 2.25 2.76 2.83 2.07
-0.84 0.09 -2.18 -0.41 -1.0 -3.61 -0.28 -1.6 -0.49 -3.09 0.56 -0.48 -1.42 0.19 -1.47 -1.56 1.37 0.26 0.08 -0.57 -1.17 -0.37 0.65 -1.23 -0.67 -4.08 -3.54 1.31 1.67 1.26 0.98 0.98 0.96
-2.53 -1.77 -3.1 -4.25 -4.76 -0.26 -1.76 -1.83 -3.43 -0.93 0.99 0.45 -1.53 0.37 1.46 0.14 0.97 1.73 0.7 0.63 0.31 -0.16 0.42 0.4 0.05 -2.08 -2.04 0.96 0.13 -0.19 0.25 0.17 -1.13
- - - - - - - - - - -0.14 - 0.89 0.96 0.97 0.88 0.84 1.04 0.93 - - 0.95 - 0.71 1.0 - - -0.35 0.94 -0.16 1.54 2.23 0.99
- - - - - - - - - - - - - - - - 1.82 - - - - - - - - - - 1.99 1.11 2.2 1.92 2.72 3.07
- - - - - - 0.55 -1.76 -2.4 - - -1.0 -1.06 -0.99 - - 1.54 0.67 - -1.09 0.53 -1.09 0.47 - -0.95 -0.77 -0.12 1.08 1.32 2.47 1.13 1.83 1.75
-1.15 -1.81 -0.77 -2.28 -1.76 -2.94 0.92 -1.41 -1.64 - -0.39 -0.73 0.71 0.45 0.08 -0.23 1.51 -0.07 - -0.82 - -0.01 0.15 0.19 0.63 -1.56 -3.58 0.64 1.15 1.25 0.96 1.19 1.13
- - - - - - - - - - -0.5 0.6 0.3 2.44 - - 0.68 - - - 0.54 -0.98 -0.0 -0.13 -1.16 -4.25 - 1.73 1.72 1.97 0.83 1.29 1.75
-0.35 - -0.81 - - - - - -0.68 - -0.24 - - 1.89 - - 1.7 - - - 0.66 -0.38 - - - -1.36 -2.52 - 1.85 3.35 - -0.31 2.51
-1.74 -2.6 -2.57 -1.87 -2.24 - -0.4 -2.51 -1.21 - -0.11 -1.67 -1.74 0.34 -0.08 0.25 1.23 0.99 -0.69 1.24 - 0.28 0.21 -1.92 1.18 -2.88 -4.06 1.32 0.33 1.48 1.3 0.9 1.19
- -0.22 -3.18 - - - 0.32 - - -0.75 0.07 0.66 -0.12 1.67 -0.65 -0.74 1.21 -0.58 -0.68 - -1.71 0.11 -0.19 0.1 0.71 -1.58 -3.87 0.35 0.86 2.01 0.2 0.61 1.79
- - - - - - -0.28 - - - 0.27 - -0.74 - -1.26 0.23 1.64 - 0.29 0.23 - 1.15 0.2 - - -2.05 -3.67 1.06 1.24 1.08 2.35 1.69 2.23

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.