Heatmap: Cluster_368 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-4.44 -3.98 -1.59 -1.23 -0.89 -2.86 0.32 -2.19 -1.29 - 0.25 0.17 2.18 1.97 -0.26 -0.01 -0.59 -2.65 -3.76 -0.36 -3.79 1.81 -0.39 - 3.01 -1.43 -1.36 -0.96 -2.8 -2.24 -1.19 -0.59 -2.63
- -3.44 - - - - - - - - 2.25 - 2.63 -3.22 -1.16 -1.58 2.06 0.49 0.16 0.71 -0.51 -2.08 -2.47 - 3.47 -3.12 -1.1 - - - - - -
-2.74 -2.63 -4.7 -3.16 -6.38 - -0.1 -3.33 -3.6 - -1.18 1.48 0.35 0.58 -1.15 -0.9 0.55 0.01 -0.51 -0.11 0.04 1.54 1.51 -2.32 1.59 0.3 0.54 -0.56 0.36 0.94 -0.33 -0.2 1.06
-4.73 -4.67 -6.81 -8.61 -3.85 -2.83 -4.68 -4.43 -6.17 -7.26 1.54 1.98 1.65 0.35 -2.92 0.41 0.19 1.05 0.89 -0.04 -0.04 -0.1 -1.91 - 3.32 -7.15 -7.4 -2.41 -1.03 -2.11 -2.97 -2.92 -1.05
-0.86 -0.57 -1.21 -1.72 -1.46 -1.49 -0.19 -0.84 -1.15 -1.31 0.81 0.38 1.03 0.02 0.33 1.0 0.27 0.55 0.48 0.29 0.47 0.55 0.21 0.16 1.28 -0.69 -0.45 -0.4 -0.48 -0.19 -0.65 -0.84 -0.12
-6.4 -5.39 -5.95 -5.88 -6.03 - -1.35 - -5.16 - 0.43 1.11 0.84 -0.01 -0.34 0.18 0.07 -0.41 -0.25 0.22 0.25 -0.41 0.97 -3.7 1.92 0.03 0.25 -0.74 1.04 1.83 -1.0 -0.37 1.58
-5.5 -3.44 -6.01 - -6.37 - -2.3 -4.42 - - 0.84 1.04 1.27 0.3 -0.19 1.53 -0.02 -0.08 1.32 0.77 0.51 -0.18 0.81 -5.2 2.13 -0.67 -0.68 -1.81 -0.06 1.11 -2.26 -1.17 0.53
-3.49 - -7.33 - - - 0.27 - - -4.65 -0.07 2.17 0.75 0.33 -0.59 -1.49 0.52 -1.08 -0.51 -1.5 -1.47 -0.19 0.55 - 2.7 -0.51 -0.03 -1.9 -0.05 1.72 -0.83 -0.92 1.49
-2.01 -0.49 -3.26 -5.98 -5.22 -6.6 0.88 - -5.42 -3.84 2.3 2.55 1.35 0.2 -1.39 0.38 1.2 -3.14 -1.66 -3.31 -1.75 -0.82 -1.99 -6.64 3.0 -0.51 0.18 - -7.41 - - - -7.36
-6.11 -4.64 -7.2 - -5.58 - -0.31 -6.84 - - 1.19 0.95 1.42 -0.37 -3.66 -0.48 -0.21 0.54 1.05 -0.38 0.68 0.4 -0.06 -2.33 2.43 0.21 0.35 -0.68 0.05 0.56 -0.41 -0.35 0.91
-2.21 -2.33 -5.07 -3.99 -4.25 -3.44 -0.4 -5.52 -4.46 -4.06 0.77 1.34 0.95 0.31 1.19 1.6 0.07 -0.04 0.74 1.19 0.96 0.9 0.99 -2.09 1.75 -0.13 0.19 -4.37 -1.99 -1.06 -2.69 -2.99 -1.96
-0.72 -1.19 -1.37 -2.01 -4.33 -3.79 -0.22 -5.34 -3.38 -7.36 -0.09 1.22 0.79 0.0 2.65 0.06 0.42 0.45 -0.89 -1.08 0.03 1.61 -1.33 1.08 1.4 0.35 0.37 -1.95 -3.38 -1.52 -2.15 -2.53 -1.87
- - -5.77 -4.42 -5.05 -3.43 0.06 - - - 0.24 0.77 2.08 0.34 -1.23 0.4 0.1 -1.35 0.71 -0.31 -0.33 0.51 1.17 -1.49 1.68 0.7 0.88 -1.5 0.34 0.85 -0.87 -1.07 0.85
-0.94 -1.13 -0.93 -1.68 -0.78 -1.48 -0.71 -4.43 -4.55 -4.57 0.79 1.31 1.12 0.36 0.79 0.73 0.66 0.3 0.1 0.24 -0.02 0.65 0.09 -1.26 1.86 0.14 -0.08 -1.34 -0.51 -0.69 -1.19 -0.53 -0.34
-1.55 -1.47 -3.02 -3.59 -3.9 -2.61 0.44 -2.87 -2.81 -3.02 -0.19 0.52 2.02 0.38 -0.14 0.93 -0.25 -0.56 0.28 0.22 0.58 0.99 -0.76 -1.41 1.28 -0.57 -0.27 -0.94 -0.22 1.08 -0.45 -0.3 1.22
-5.14 -5.67 -5.18 -7.23 -6.29 -7.68 -1.84 - - -4.48 0.06 0.88 0.28 1.26 -0.67 0.48 0.4 0.6 0.38 0.65 0.19 -0.36 0.66 -4.4 1.67 -0.28 -0.17 -0.89 0.99 1.74 -0.67 -0.43 1.42
-1.17 -1.0 -1.22 -1.32 -1.34 -0.81 -1.01 -0.85 -0.96 -0.87 0.41 -1.07 0.39 -0.94 2.38 0.13 0.51 0.38 1.08 0.75 0.6 -0.48 -0.4 -1.43 0.11 0.17 -0.06 0.19 -0.52 -0.69 0.18 -0.15 -0.55
- - - -9.09 - - -5.55 - -6.73 - -0.02 -1.82 1.51 -3.61 3.35 0.43 1.26 -0.84 -0.06 -1.32 -0.43 -0.7 -0.29 -1.09 1.8 -0.05 0.19 0.03 -1.58 -2.33 -0.01 -0.3 0.43
-3.56 -4.18 - -5.91 -4.11 - -3.66 -2.06 - - -2.11 2.58 -0.88 2.91 -1.88 -1.97 1.05 1.39 -4.23 - -4.27 -1.06 -1.33 -2.46 1.48 0.91 1.03 -0.33 -0.13 0.73 -1.15 -0.85 -0.51
- - - - -7.72 - - - - - 1.19 - 1.63 - 3.66 0.54 0.25 0.63 1.4 0.15 1.21 - -2.4 -1.62 2.06 -8.22 -9.94 - - -7.66 - -6.41 -
-2.84 -2.88 -1.55 -2.78 -1.96 -2.43 0.38 -2.79 -2.29 -2.78 0.86 1.99 1.01 1.27 1.11 0.65 -1.27 0.33 0.45 0.45 0.15 1.24 - -0.49 2.37 -1.27 -0.21 -2.67 -2.61 -2.12 -3.31 -3.32 -1.9
-0.91 -1.42 -2.16 -2.89 -2.31 -1.1 1.02 -1.45 -1.62 -2.11 0.81 1.58 1.32 0.74 2.05 0.61 -1.16 0.04 -0.11 0.58 0.06 1.35 -2.98 -1.84 2.04 -0.29 -0.45 - - -7.94 - - -
-1.67 -1.82 -2.74 -5.97 -4.22 -5.38 -0.24 -3.91 -5.64 -4.65 0.9 1.64 0.95 0.68 -2.05 -0.31 0.38 0.24 0.65 -0.03 -0.12 -0.27 0.33 -4.48 2.35 0.04 0.22 -2.39 -0.37 1.27 -2.0 -1.83 1.23
-5.15 -0.41 - - - - - -6.26 - - 0.98 -0.29 1.86 -2.24 2.52 1.64 -0.33 0.73 0.02 -0.46 0.41 0.6 -1.29 -1.34 1.82 0.76 0.5 -3.2 -1.22 -0.25 -3.08 -1.26 -1.49
-6.07 -5.26 -5.35 - - - 0.97 - -6.78 - 0.83 2.16 0.97 1.96 -0.41 0.41 1.04 -3.7 -0.39 -0.94 -0.57 1.99 -1.32 -1.53 1.57 0.53 0.75 -1.53 -2.13 -1.7 -2.83 -2.45 -0.55
- - - - -5.99 - 1.15 -4.54 - -4.12 -0.31 2.45 1.35 1.47 -0.08 0.13 1.02 -1.87 -0.32 -0.56 -1.29 1.9 -1.35 -1.82 1.38 0.29 0.92 -1.73 -1.38 -0.54 -2.27 -1.36 -0.41
-3.27 -3.92 -1.96 -2.1 -1.71 -2.79 -0.16 -2.83 -3.91 -4.26 0.85 1.1 1.18 0.98 1.2 0.95 -0.45 0.2 0.61 -0.15 0.08 1.32 -1.76 -1.5 2.08 -0.77 -0.54 -0.3 -0.55 -0.73 -0.74 -0.53 -0.1
- -9.19 - - -9.7 - - - - - -0.53 2.86 2.01 2.11 -0.31 -0.92 1.48 -0.77 -1.89 -1.33 -0.97 -1.4 1.6 -1.49 2.05 0.5 0.59 - - - - - -
-1.12 -4.35 -0.34 -0.76 -0.37 -1.71 0.46 0.27 -0.72 -1.68 0.69 1.22 1.35 0.72 -4.09 -0.49 0.94 0.83 0.75 -0.6 0.43 0.51 -1.85 -2.32 1.93 0.14 0.65 -3.49 -1.23 -1.0 -3.71 -3.61 -0.56
-0.9 -1.75 -1.28 -1.61 -1.34 -1.48 0.51 -1.07 -0.88 -1.07 0.67 0.64 0.98 0.62 1.27 1.06 -0.5 0.76 -0.07 1.03 0.17 1.04 0.16 -0.18 1.03 -0.25 -0.4 -1.38 -1.39 -1.23 -1.27 -1.91 -0.97
- - - - - - - -4.76 - - 3.04 - 2.09 - - -1.12 1.87 0.36 -0.66 0.35 -0.16 -2.62 -1.35 - 3.47 -3.69 -0.85 - - - - - -
- - - -8.77 - - -7.5 - - - 0.93 3.14 0.45 1.3 -6.44 0.04 1.12 0.84 0.43 -0.52 -0.15 1.13 -3.57 -6.7 2.23 0.39 1.13 -4.66 - - - - -6.42
-1.77 -2.25 -4.4 -4.93 -3.84 -2.81 0.28 -5.97 -4.73 -2.61 0.93 0.82 0.62 -0.37 0.98 1.12 0.33 0.77 0.75 1.24 1.13 0.89 1.21 -1.62 1.07 -0.01 0.39 -2.03 -1.87 -0.82 -1.79 -1.47 -0.32
-1.99 -1.01 -4.22 -4.59 -5.3 -5.21 0.76 - -6.34 - -0.47 2.26 1.74 0.6 2.07 0.07 0.04 -1.41 -1.32 -1.38 -0.71 0.32 0.15 1.58 2.35 -0.24 -0.57 - - - - - -
- -4.43 -5.34 - -6.83 - 1.25 - - - -0.9 0.22 0.62 -1.36 -2.94 0.38 1.44 - -0.56 -0.23 -0.34 0.67 1.5 -2.19 1.21 0.6 0.39 -0.28 1.15 1.58 0.33 0.39 1.05
- - - - -7.28 - - - - -4.36 0.1 -2.27 1.61 - 4.17 -0.25 1.29 -2.79 0.16 -2.77 -1.65 -1.85 -0.37 -0.73 1.9 -4.11 -4.47 - -6.06 - - - -4.28
-2.34 -3.12 -2.62 -3.72 -6.74 - -1.94 - -7.76 - -0.17 0.35 1.35 -0.56 2.27 0.86 0.74 -0.24 -0.21 -0.82 -0.36 1.03 1.52 -2.8 2.41 -0.6 -0.2 -1.38 -0.8 -0.42 -0.44 -0.36 -1.73
- - -8.39 -5.73 - - -4.97 - - - 1.95 0.25 -0.01 -1.81 3.39 -2.19 0.33 -1.07 0.68 1.31 0.84 -0.07 1.59 -2.48 1.77 -1.28 -1.42 - - - -8.14 -6.3 -
- - - - - - - -5.84 - - 0.34 -0.75 2.15 -0.99 2.72 1.92 -0.12 1.06 0.94 -0.13 0.81 0.01 - -1.07 1.66 0.67 0.36 -5.18 -3.03 -2.11 -5.14 - -1.91
- - - - - - -6.44 - - - 1.41 0.27 -0.27 -0.36 3.38 -2.85 0.4 -0.33 1.43 1.54 0.92 -0.51 1.22 -3.68 1.69 -0.87 -1.1 -6.5 - - - -6.46 -
-3.42 -2.01 -4.94 - -5.18 -4.62 0.07 - -4.34 -3.85 1.64 2.03 0.14 -1.0 1.05 0.45 1.06 1.01 1.15 0.45 0.54 2.14 -2.12 -3.08 1.56 0.11 0.13 - - -3.39 -5.28 -4.57 -
-1.58 -2.11 -1.85 -1.54 -1.92 -0.73 -0.68 -0.8 -1.77 -0.49 1.3 0.88 2.34 0.81 1.05 1.19 0.17 0.34 1.17 0.4 1.04 1.17 -1.49 -2.36 1.3 - - - - - - - -
-1.11 -0.76 -1.31 -3.35 -4.78 -3.84 -1.15 -3.71 -1.96 -4.65 1.32 2.14 0.29 -0.11 0.96 0.69 1.2 -0.26 0.78 0.54 0.52 1.78 -0.1 -3.47 1.56 0.07 0.36 -3.73 -5.33 -3.03 -3.8 -4.3 -3.58
- - - - - - -1.71 -6.74 - - -0.9 1.53 0.68 2.4 2.28 -0.98 0.24 -0.88 -0.94 -2.46 -0.72 0.37 0.71 -0.91 2.89 0.07 0.13 -2.14 -4.45 -3.9 -1.15 -3.98 -3.09
-0.71 -0.0 -2.88 -1.21 -2.48 - -1.11 -4.13 -3.35 -4.41 0.73 0.81 2.07 2.08 -0.35 1.03 -0.79 1.36 0.35 -0.99 0.34 1.72 -0.91 -2.04 2.29 -3.51 -3.96 - - - - - -
- -5.56 -6.13 - - - -3.06 -6.77 - - 1.64 2.0 0.8 -0.01 0.35 1.46 0.92 -1.04 1.35 0.83 0.7 2.05 0.26 -3.18 1.13 0.24 0.63 -7.24 -5.72 -3.8 -4.42 -3.52 -5.08
-2.39 -2.73 -2.72 -3.1 -3.64 -2.93 -0.59 -3.22 -3.36 -4.22 0.95 1.46 1.53 0.89 0.2 0.94 0.11 -0.5 0.6 0.91 -0.1 1.42 -0.65 -1.53 2.03 -1.21 -0.75 -1.45 -0.8 0.2 -0.94 -1.17 -0.29
-2.14 -1.22 -3.37 -2.63 -3.53 -2.5 0.28 -4.61 -3.24 -3.8 0.78 0.73 1.67 -0.17 0.63 1.0 1.04 1.05 -0.33 0.46 -0.1 0.99 0.34 -0.7 1.7 -1.04 0.18 -2.32 -0.69 -0.04 -1.57 -1.65 -0.04
- -4.61 - - - - - - - - 0.6 2.94 1.42 2.34 0.75 -1.28 1.55 -0.28 -1.22 -2.08 -1.26 -1.53 1.28 -2.89 2.09 -0.02 -0.08 - - - - - -
-3.9 -5.08 -5.26 -5.49 -8.04 - -0.22 - - - -0.42 1.45 0.51 0.22 2.99 -0.68 0.79 0.79 -0.27 -1.11 -0.21 1.73 -1.03 0.35 1.4 -0.1 0.24 -1.24 -2.93 -0.9 -1.58 -2.78 -1.66
-2.5 -1.39 -1.86 -4.03 -2.28 -3.49 0.27 -2.36 -1.5 -4.23 1.49 1.07 1.59 0.72 0.01 1.4 -1.77 0.83 0.98 0.67 0.87 1.34 -0.45 -1.72 1.59 0.21 0.0 - -5.35 -1.99 - - -1.76
- - - - - - -4.23 - - - -3.93 2.61 0.5 2.01 1.46 -2.26 1.22 -3.75 -2.86 -2.92 -1.84 1.25 1.04 -0.09 2.92 0.12 0.5 - - - - - -
-3.96 -6.77 -4.29 -3.67 -5.0 -5.05 -1.98 - -5.26 -7.1 0.33 0.32 -0.27 0.46 0.43 -0.23 1.45 -0.8 -0.96 0.28 -0.26 0.24 0.99 -3.23 1.03 0.59 0.83 -0.4 0.87 1.62 0.4 0.72 1.3
- -3.0 - -6.38 - - -0.17 - - -5.69 0.13 1.63 1.67 0.2 -3.37 1.3 -0.19 -0.02 0.93 0.87 0.86 -0.19 0.63 -3.62 2.02 -0.84 -0.2 -2.23 0.07 1.17 -2.82 -2.39 0.7
-4.25 -5.94 - -5.77 - -5.48 0.42 - - - 0.86 1.44 1.14 0.46 1.98 0.55 0.17 0.94 1.07 1.17 1.4 1.38 -5.4 -2.02 1.29 -0.14 0.27 -5.38 -2.91 -2.09 -4.28 -5.25 -3.25
- - -5.21 - - - -2.15 - - - 0.5 1.39 1.9 1.0 2.24 1.62 1.04 -0.26 0.03 -0.43 0.19 0.29 -2.81 -1.45 2.3 0.26 -0.0 -6.33 -4.71 -2.45 -4.33 -4.84 -2.49
-0.73 -0.46 -1.33 -1.59 -1.15 -1.01 -0.73 -0.94 -1.08 -0.13 0.8 0.58 1.06 0.27 -0.6 0.55 0.22 0.43 0.66 0.64 0.67 0.43 0.03 -1.15 1.2 -0.37 -0.15 -0.96 -0.2 0.14 -0.63 -0.81 0.13
-3.65 -3.17 -4.4 -4.03 -2.96 -3.84 -3.27 -3.12 -3.84 -3.79 -0.38 0.76 1.48 1.26 0.93 -0.66 0.51 -1.52 -0.88 -1.45 -1.01 1.43 2.15 -0.83 2.05 -0.82 -0.26 0.84 -0.72 -2.19 0.37 0.17 -0.97
-5.34 -2.54 -6.2 - -7.08 - -0.07 - - - -0.16 1.87 1.25 1.32 0.79 0.52 0.51 -3.56 0.5 1.15 -0.38 1.83 0.15 -1.19 1.33 -0.13 0.33 -1.26 -1.82 -0.83 -0.38 0.0 -1.06
-2.47 -3.64 -1.83 -3.63 -3.07 -3.85 -1.12 -4.09 -4.69 -3.57 1.1 1.48 1.36 0.38 0.01 1.17 0.79 -0.46 0.4 1.16 0.26 1.35 0.2 -2.89 1.88 0.16 0.36 -2.55 -1.7 -0.63 -1.42 -1.6 -0.89
- - - - - - - - - - - - - - 4.02 - 0.53 - - - 2.37 - - - - - - - 1.31 1.43 1.21 - 1.46
-7.68 -5.33 -7.15 -8.39 -9.05 -6.74 -0.77 - - - 0.82 2.67 0.96 1.74 -0.96 -0.36 -0.6 -1.45 -0.41 -0.97 -1.03 -0.05 0.31 -4.54 3.06 0.4 0.83 -3.87 -4.04 -2.91 -3.42 -2.74 -0.57
-1.47 -0.85 -2.55 -1.92 -3.12 -3.95 -1.04 - - - 0.18 1.22 1.7 2.33 1.43 -0.09 -1.3 1.37 0.91 -0.46 0.07 1.36 0.58 -0.93 1.64 -0.99 -0.56 - - -3.72 - - -
-4.24 - - - - - 0.91 - - -4.78 -0.07 1.67 0.88 -1.43 - -1.03 1.24 -3.09 -0.39 -1.52 -3.23 0.8 0.89 - 2.27 0.05 0.29 -0.25 0.05 2.15 -0.98 -1.23 1.38
-1.98 -2.36 -2.85 -3.02 -3.69 -2.97 -1.55 -3.53 -3.7 -3.9 0.07 1.32 0.83 0.21 -0.38 0.22 0.96 -1.4 0.14 0.3 -0.61 1.04 0.57 -2.44 1.68 0.32 0.5 -0.36 0.28 1.27 0.11 -0.06 0.8
- -5.32 - - -3.36 - - -2.62 -3.13 - 0.85 1.08 1.71 0.71 0.46 -0.09 1.7 -0.58 0.53 0.42 0.94 -0.84 -1.07 0.14 3.07 -0.06 0.41 - - - - - -5.5
-6.06 -5.89 - - - - 0.62 - - - -0.32 2.39 1.71 1.13 -0.84 -0.2 1.6 -1.64 -0.37 -0.29 -1.31 2.03 -2.11 -0.82 1.36 -0.16 0.4 -0.89 -1.38 -0.56 -1.65 -0.81 -0.0

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.