Heatmap: Cluster_476 (HCCA cluster)

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Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
2.44 0.97 1.36 0.49 1.74 0.37 3.05 0.69 2.06 1.98 32.76 7.38 22.87 1.94 26.55 27.96 21.98 40.46 35.71 35.99 31.8 6.61 10.69 5.52 17.25 10.11 11.46 11.1 10.25 13.47 12.61 10.5 12.71
33.33 23.56 41.27 33.49 39.16 24.76 61.84 27.4 20.02 17.61 238.39 44.43 155.53 37.99 132.95 190.02 239.23 234.58 316.62 266.73 358.8 59.03 64.88 37.24 161.19 111.59 128.35 106.36 103.75 115.75 124.42 96.21 96.39
0.0 0.01 0.03 0.02 0.0 0.0 0.4 0.01 0.0 0.0 28.17 1.67 13.43 1.22 2.19 16.61 22.82 22.55 33.85 20.89 28.59 1.59 3.55 4.19 8.07 6.5 8.97 5.65 6.67 5.94 5.56 5.81 7.77
41.77 39.57 32.27 34.77 49.6 70.93 40.79 67.95 80.52 68.55 315.03 70.38 157.41 59.94 175.41 324.7 178.45 317.85 381.74 331.43 366.95 37.17 146.6 64.56 128.07 102.37 128.25 72.61 89.75 100.54 78.34 77.91 100.91
0.0 0.02 0.07 0.02 0.01 0.0 3.32 0.03 0.0 0.0 6.86 2.98 1.42 1.58 1.39 1.24 2.21 7.15 9.14 7.19 12.05 0.3 2.98 0.79 3.64 1.18 1.11 0.33 0.21 0.5 0.11 0.19 0.51
0.25 0.37 0.26 0.4 0.41 0.64 3.32 0.14 0.22 0.13 17.79 4.39 11.3 2.78 8.82 23.58 10.74 13.66 25.7 19.14 23.97 2.69 5.47 2.09 6.64 5.56 6.2 1.94 1.47 2.6 2.36 3.48 2.09
6.5 4.91 4.75 2.94 5.33 4.8 3.64 7.18 6.6 5.91 51.89 5.4 40.36 3.72 24.22 42.71 44.8 49.58 66.42 62.37 56.53 4.97 8.93 7.29 36.4 14.9 19.52 9.71 15.79 19.71 15.43 15.77 17.6
0.84 0.92 0.39 1.42 1.59 2.15 1.42 1.1 1.88 1.67 45.21 6.78 17.21 4.46 8.31 25.07 49.08 53.9 63.31 43.5 60.52 2.84 4.74 7.45 22.32 11.16 13.46 10.46 11.67 17.26 12.71 15.29 15.4
3.01 3.42 2.53 3.87 3.68 4.99 4.19 3.94 4.0 4.16 59.24 7.59 28.74 9.24 37.03 43.64 62.79 74.99 66.81 59.51 71.06 10.9 10.75 5.94 22.49 22.63 29.77 12.47 18.96 25.78 20.12 15.97 23.7
7.51 9.75 5.45 6.69 5.98 6.95 3.57 9.31 7.3 9.26 49.69 5.78 24.87 9.24 39.55 51.74 45.75 60.51 63.81 66.25 63.09 9.4 12.72 6.32 16.0 22.31 26.7 15.59 20.14 29.72 22.02 29.25 24.5
0.01 0.06 0.01 0.02 0.0 0.0 0.36 0.0 0.0 0.0 2.4 0.19 1.58 0.31 0.14 1.47 2.35 1.54 1.69 1.91 1.61 0.33 0.24 0.04 2.14 0.39 0.57 0.46 0.5 0.58 0.37 0.45 0.49
0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.02 8.8 0.21 4.32 0.24 0.38 2.64 5.11 7.68 9.26 6.67 8.68 0.08 0.35 0.14 3.42 1.62 2.02 1.23 1.52 2.15 1.32 1.38 2.39
42.58 32.79 51.44 39.29 45.25 43.95 34.43 61.43 43.76 55.04 366.87 66.96 323.07 58.79 192.25 364.75 191.82 395.72 436.03 388.09 441.31 64.06 172.18 86.17 152.85 104.82 120.43 49.96 55.78 76.32 67.16 70.22 71.0
0.0 0.0 0.0 0.0 0.01 0.0 0.01 0.25 0.0 0.0 41.78 5.42 21.47 8.01 4.04 30.28 19.95 30.0 37.87 31.3 30.44 14.4 16.44 13.01 22.3 13.2 17.59 2.53 4.55 6.98 2.42 4.77 8.81
29.59 37.25 23.78 21.29 24.86 33.69 23.6 29.28 27.69 36.26 251.67 40.63 225.78 39.33 129.68 266.49 183.04 239.08 287.79 263.56 262.29 41.16 59.22 35.9 119.82 87.5 106.95 50.23 58.61 79.44 54.64 55.92 76.52
0.73 0.75 0.42 0.33 0.39 0.26 3.82 0.24 0.28 1.15 64.42 10.72 44.59 7.97 44.04 68.36 61.36 74.51 85.12 77.74 78.52 9.52 11.92 7.23 34.11 21.16 25.6 21.32 25.98 33.41 25.21 24.98 33.78
15.95 24.24 12.14 12.57 10.7 17.71 6.36 9.75 9.87 28.3 239.85 16.02 137.49 16.87 25.09 148.21 286.83 247.11 271.21 236.06 279.12 10.27 38.98 8.72 138.84 85.17 116.94 54.39 58.85 87.92 60.32 76.31 73.21
0.18 1.1 0.07 0.03 0.04 0.07 3.71 0.01 0.0 0.0 44.48 5.97 32.92 3.58 16.41 40.97 25.85 46.04 45.11 39.88 40.57 3.42 4.98 3.91 32.98 11.4 15.4 14.93 13.86 18.59 14.47 14.27 12.5
1.8 1.84 0.71 1.09 0.85 0.61 4.35 0.52 0.45 0.63 23.92 4.58 23.36 3.84 15.19 25.65 30.25 29.73 34.54 29.07 31.2 5.27 9.3 5.82 18.53 11.37 14.41 11.52 12.9 15.76 12.94 13.55 14.78
0.04 0.1 0.1 0.06 0.14 0.06 0.3 0.04 0.01 0.04 10.72 1.72 1.22 1.49 2.57 8.66 4.11 11.67 12.99 12.09 12.74 0.74 0.88 0.46 1.08 1.63 1.97 0.62 1.0 1.84 0.8 1.16 2.27
0.21 0.66 0.09 0.15 0.13 0.32 18.19 0.94 0.34 12.09 93.53 41.32 10.33 58.74 14.73 58.44 36.78 174.67 132.88 136.73 134.18 19.49 15.82 32.51 11.0 19.11 22.98 2.91 2.67 4.05 2.78 3.22 10.64
0.06 0.01 0.0 0.0 0.0 0.0 10.92 0.12 0.0 0.02 49.18 28.67 7.19 35.11 9.73 37.27 27.07 63.39 92.45 113.05 92.16 15.58 14.68 27.26 6.2 9.17 10.52 2.06 1.66 3.38 2.0 2.52 6.51
3.59 2.79 2.76 2.55 3.37 1.54 3.84 3.32 1.97 2.49 58.27 10.5 35.93 6.34 12.3 46.8 55.66 64.63 83.99 61.45 80.75 10.27 16.68 6.48 42.16 18.2 24.92 15.7 19.48 21.73 19.63 18.52 22.61
0.8 1.9 3.5 7.73 6.84 11.63 9.43 24.59 25.32 67.74 423.8 81.43 192.16 56.8 142.27 286.09 218.09 457.67 481.47 336.37 441.93 56.46 47.2 56.23 245.45 111.96 112.47 145.12 118.8 134.65 129.12 129.24 149.37
0.56 0.65 0.56 0.44 0.42 0.65 3.76 0.21 0.19 0.0 33.63 4.87 18.78 2.4 27.56 37.32 34.9 55.46 78.3 65.6 69.84 4.72 6.39 3.95 19.86 11.43 12.97 8.03 10.98 12.13 10.4 10.96 10.29
3.02 2.66 3.34 2.01 2.23 2.69 2.97 2.4 2.11 2.91 16.08 3.18 12.47 3.89 5.48 16.63 11.67 19.57 16.75 13.17 16.07 3.8 4.43 5.48 8.1 5.36 5.25 4.92 6.32 6.57 6.03 5.38 6.52
5.71 7.48 2.25 1.82 2.34 3.82 5.95 2.95 1.9 3.44 90.83 16.83 77.13 15.96 16.87 79.15 83.54 94.03 102.97 75.51 96.48 18.7 23.1 17.21 43.56 20.84 29.68 19.95 24.67 30.68 20.87 24.51 29.33
15.44 16.36 13.69 14.56 19.88 14.4 27.16 24.35 32.6 27.99 339.25 73.89 263.06 85.14 190.84 336.97 170.18 301.71 378.38 323.66 369.66 77.71 105.03 55.2 189.76 102.64 105.78 45.74 51.42 62.54 50.95 50.17 63.37
32.57 38.35 24.63 23.06 24.35 27.52 20.14 22.48 24.07 34.18 236.99 43.83 139.27 44.85 60.55 173.87 202.75 252.44 284.01 229.43 281.86 36.96 51.77 30.16 124.82 91.69 116.75 62.25 65.63 93.27 70.1 81.13 103.77
16.86 14.06 14.5 9.96 14.79 13.23 19.34 13.67 11.23 15.46 81.01 26.83 52.99 28.03 40.75 84.23 48.55 77.92 94.09 84.61 89.06 25.02 32.77 30.0 49.98 31.56 30.68 24.64 22.6 24.55 26.77 24.86 28.39
11.28 9.24 5.48 5.28 6.49 11.75 26.97 10.03 9.14 11.0 108.06 26.26 72.47 36.09 77.4 124.64 48.97 98.07 102.48 81.89 96.18 20.46 31.89 41.88 38.98 29.65 33.93 11.92 13.65 16.27 16.99 19.85 16.66
1.45 0.9 2.31 2.7 3.63 3.99 2.07 9.2 6.84 8.47 37.98 7.4 11.19 8.04 16.1 25.41 14.1 54.81 46.82 34.91 50.51 4.38 3.22 4.85 10.66 10.71 13.24 3.57 4.7 4.51 3.94 4.4 5.69
4.29 7.59 1.92 2.15 1.74 1.56 3.32 1.92 2.26 1.38 104.43 9.33 46.86 11.47 10.04 50.04 73.98 116.05 121.3 94.72 130.48 9.85 15.6 12.24 50.35 18.9 22.97 26.52 28.74 29.8 25.55 34.8 29.53
6.59 4.14 6.81 6.45 5.8 6.82 7.12 6.13 4.73 3.88 130.71 16.66 55.18 19.51 43.49 136.96 84.92 169.42 193.77 139.72 173.49 11.79 16.09 10.71 52.88 28.24 34.03 21.45 20.79 26.06 23.72 25.41 27.42
9.84 10.16 6.26 6.47 7.43 7.42 5.31 3.97 4.92 2.9 38.5 7.73 37.92 6.24 21.87 35.67 51.85 52.66 54.29 43.0 54.83 8.56 13.55 10.23 37.33 14.35 20.71 16.0 16.18 25.24 17.52 19.71 20.94
10.93 9.5 9.28 6.46 13.02 4.47 15.44 15.88 14.45 11.35 83.32 26.38 47.96 19.03 72.71 97.15 104.25 92.67 139.9 123.03 120.08 32.61 38.94 22.47 49.02 44.64 47.91 15.04 18.14 22.97 15.82 18.13 25.53
16.56 24.45 13.5 19.07 27.13 40.25 22.76 28.79 37.72 40.23 430.33 74.51 178.48 78.64 251.36 397.53 247.59 523.44 512.74 424.62 490.08 40.97 46.39 36.24 130.3 129.92 147.78 65.75 76.44 108.96 78.34 73.63 116.25
0.0 0.01 0.0 0.0 0.0 0.0 1.33 0.0 0.0 0.02 7.06 3.06 0.65 3.79 1.13 3.5 3.34 10.33 10.71 11.23 12.21 1.45 1.32 2.07 0.54 2.14 1.97 0.35 0.34 0.43 0.16 0.13 0.83
19.49 17.23 16.19 15.47 15.37 16.13 14.43 16.91 18.06 16.33 215.38 22.25 284.42 29.66 81.51 213.71 149.48 227.59 302.15 248.24 291.32 45.66 96.97 71.29 124.5 72.31 88.51 56.13 60.55 69.25 61.72 68.97 68.06
0.84 1.48 0.93 0.66 1.43 1.32 2.52 1.23 1.7 3.41 22.23 4.73 9.62 2.62 13.67 17.31 20.61 17.58 30.61 20.0 26.54 4.47 7.71 1.19 9.13 8.31 9.51 5.39 5.83 7.29 5.4 4.25 6.84
0.44 0.39 0.02 0.11 0.12 0.23 1.44 0.14 0.04 1.23 18.25 2.86 17.36 1.99 8.58 22.88 18.92 17.68 23.4 25.5 23.42 4.16 5.91 7.37 9.65 6.03 7.72 3.22 3.98 4.43 2.46 2.48 4.42
0.29 0.72 0.16 0.03 0.05 0.1 0.64 0.0 0.14 0.0 115.5 8.86 51.59 5.16 17.97 63.22 42.71 97.64 116.88 92.09 122.74 5.19 4.65 5.03 44.62 21.22 27.51 3.39 3.76 6.29 6.01 5.35 5.44
3.28 5.04 3.11 9.11 7.8 6.71 2.79 0.82 0.9 0.0 116.09 14.32 49.05 5.45 24.97 91.31 115.97 111.86 148.36 90.29 135.0 11.24 7.87 14.25 63.84 34.86 51.02 20.38 26.16 36.25 26.65 31.04 27.99
5.74 5.99 3.5 3.25 3.07 3.64 9.55 3.51 3.92 6.29 58.64 13.44 58.84 14.28 52.0 78.09 77.7 82.56 116.08 103.08 109.08 15.36 23.98 8.66 45.03 29.14 32.95 26.55 30.88 37.8 30.75 32.76 42.45
0.03 0.22 0.12 0.08 0.24 0.09 0.77 0.4 0.17 0.56 39.49 3.7 19.25 1.92 8.1 34.11 36.65 35.01 52.77 36.28 44.96 1.9 4.21 2.11 10.63 14.65 16.73 11.6 12.58 16.96 13.06 16.52 16.49
0.01 0.01 0.0 0.03 0.0 0.0 0.15 0.0 0.0 0.0 5.77 1.34 0.85 0.7 1.68 6.2 2.85 5.66 11.65 9.44 10.35 0.66 1.3 0.32 0.79 1.01 1.33 0.5 0.6 1.19 0.51 0.63 1.51
0.07 0.14 0.0 0.02 0.09 0.02 0.13 0.12 0.17 0.35 13.14 1.12 4.75 1.44 1.56 5.21 6.48 18.26 10.31 8.31 13.11 0.5 0.71 1.07 6.4 2.15 3.17 1.82 2.22 2.27 1.66 1.66 2.96
10.94 8.41 11.05 8.6 10.92 16.99 7.01 8.35 8.6 9.5 652.76 47.17 73.83 77.1 72.01 271.99 182.27 601.63 758.93 485.85 808.01 28.78 26.22 19.13 108.06 110.32 130.0 42.94 36.47 47.21 39.56 48.85 64.91
1.3 1.03 0.27 0.42 0.63 0.77 1.21 0.36 0.52 0.14 61.03 4.94 30.28 5.93 4.64 26.44 50.71 46.04 52.34 31.9 47.39 3.09 6.26 3.76 24.63 21.42 26.85 10.9 11.39 14.95 11.16 9.85 13.87
0.04 0.0 0.01 0.21 0.04 0.21 0.07 0.03 0.0 0.02 14.2 0.74 8.02 0.02 1.75 8.78 6.69 12.7 13.84 10.96 13.8 0.39 1.37 1.15 7.11 3.95 4.82 1.77 2.45 3.44 2.85 2.24 2.36
1.7 1.81 0.65 0.48 0.6 0.2 9.66 0.59 0.86 0.5 75.59 20.72 32.58 14.88 60.65 78.04 42.01 64.15 77.95 82.05 82.01 10.91 22.46 8.8 37.8 21.21 23.4 13.17 17.84 22.39 20.13 20.4 19.93
0.04 0.06 0.13 0.55 0.3 0.21 0.12 0.14 0.0 0.84 245.16 29.94 151.98 21.19 55.22 193.34 189.88 226.68 315.84 235.07 280.66 13.27 18.73 16.25 197.39 30.47 38.78 38.04 41.52 86.15 47.59 72.06 53.93
0.32 0.69 0.25 0.15 0.2 0.7 0.26 0.23 0.36 0.16 47.02 1.55 19.64 1.51 4.9 22.97 46.89 47.36 41.32 28.89 40.75 2.01 4.54 6.8 14.91 10.61 15.3 9.41 11.12 10.33 10.21 9.63 14.3
1.24 0.8 0.38 0.37 0.37 0.21 2.79 0.08 0.18 0.18 31.1 6.52 5.71 2.3 15.86 25.18 18.21 27.1 36.72 28.31 30.22 3.24 6.24 2.82 10.73 9.49 9.36 11.05 9.72 12.14 11.65 12.3 13.7
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 48.83 0.41 5.74 0.77 22.54 33.42 17.26 49.45 53.12 43.7 55.1 0.02 0.0 0.0 4.21 1.05 2.73 0.0 0.0 0.02 0.0 0.0 0.03
4.4 4.56 3.14 3.06 2.48 2.66 4.92 2.83 4.12 5.6 105.53 13.18 27.95 13.32 25.11 82.58 44.15 106.61 113.31 92.09 109.86 11.83 13.51 3.66 29.31 18.29 22.92 3.0 3.77 4.63 3.83 3.53 5.03
1.4 1.49 2.14 3.27 2.25 0.32 27.01 0.99 0.76 0.88 116.87 9.95 102.35 5.42 63.94 137.68 136.16 127.22 178.88 155.99 174.36 13.98 38.54 23.72 79.27 37.25 45.89 28.57 30.87 40.88 37.11 39.56 25.74
0.0 0.06 0.0 0.04 0.05 0.0 0.66 0.08 0.03 0.11 12.8 1.65 4.81 4.1 7.38 13.24 10.73 12.33 14.45 13.97 15.36 1.53 2.23 0.77 4.53 3.99 5.43 0.04 0.07 0.32 0.24 0.32 0.08
0.07 0.18 0.05 0.05 0.06 0.06 0.89 0.03 0.04 0.29 8.0 2.36 5.17 2.42 1.42 5.48 8.81 5.76 10.22 8.04 8.77 2.0 1.74 0.95 5.32 2.85 3.58 3.49 3.91 4.6 3.15 3.39 3.8
99.1 103.1 73.62 84.14 81.69 109.59 79.8 80.85 82.45 120.13 371.3 108.98 263.47 124.59 210.95 359.97 197.16 406.7 453.04 348.33 437.5 93.55 144.74 133.84 172.41 125.97 135.07 91.34 99.55 102.61 85.2 81.57 110.56
20.47 17.83 23.23 15.68 21.4 12.72 20.84 35.3 19.45 16.73 161.64 30.53 182.22 34.31 63.99 197.63 100.99 164.47 244.19 147.83 194.77 37.45 45.73 44.51 86.7 47.95 53.12 35.97 39.26 50.24 46.5 41.94 43.72
8.77 14.08 4.56 3.64 5.41 9.67 8.59 3.79 5.25 11.12 85.24 19.36 46.24 15.21 15.23 65.54 72.55 101.08 110.61 76.95 108.88 18.14 18.07 6.48 53.84 40.01 46.88 27.72 30.99 33.66 31.56 29.5 27.51
8.48 5.34 13.31 11.9 12.95 7.86 11.66 12.02 10.82 9.85 381.05 25.16 48.36 15.6 60.53 168.11 134.9 337.78 400.94 297.84 392.48 11.38 10.29 7.17 43.29 65.52 76.55 28.35 33.2 42.94 26.05 34.46 52.54
0.0 0.87 0.58 0.1 0.33 0.56 1.72 0.23 0.09 0.25 24.87 3.65 15.98 3.17 8.39 24.93 13.28 21.77 26.71 23.99 22.59 2.87 3.61 1.69 10.66 4.47 5.6 4.13 3.71 4.98 4.07 4.48 6.13
0.82 0.64 0.74 0.51 0.8 0.36 2.18 0.87 0.67 0.21 31.21 3.99 13.61 3.65 16.92 29.78 31.71 26.06 37.54 37.95 38.09 3.21 8.33 4.03 11.64 15.71 18.13 15.52 20.81 19.68 15.66 18.56 16.36
0.67 0.92 0.62 1.3 0.62 0.98 2.3 1.58 0.29 0.37 21.64 2.7 12.5 2.59 5.07 15.12 14.43 21.37 21.19 18.2 18.64 2.27 2.49 3.76 13.95 4.95 6.74 5.83 5.49 6.63 5.95 5.49 8.37
1.5 1.4 1.75 0.94 1.5 0.67 2.58 0.96 1.61 0.49 14.87 3.06 10.46 4.61 8.0 15.91 13.16 16.74 16.94 14.24 20.6 4.13 4.17 5.15 7.87 5.24 4.76 5.22 7.25 5.58 5.33 4.51 6.54
3.91 4.86 2.64 2.21 3.06 3.46 15.99 1.87 3.09 4.37 44.6 20.82 30.69 16.73 39.79 52.93 30.16 42.86 65.15 56.62 56.67 14.06 25.87 13.89 23.62 19.34 18.82 7.26 6.16 7.87 9.68 8.87 9.48
0.15 0.64 0.52 0.41 0.42 0.3 2.24 0.14 1.0 0.45 56.78 6.47 22.36 4.87 13.6 33.46 27.05 38.95 49.69 57.65 56.21 4.43 11.17 7.59 20.52 9.68 11.11 10.12 11.42 13.53 8.4 7.98 13.58
0.26 0.21 0.15 0.14 0.15 0.0 2.72 0.0 0.06 0.46 137.49 12.99 43.56 12.02 25.11 100.72 73.17 127.01 147.77 180.14 160.58 8.66 21.8 8.42 69.23 34.75 45.19 34.92 30.34 40.53 36.46 40.05 41.57
14.71 13.83 11.09 11.23 10.58 12.87 22.04 15.23 11.31 17.59 135.22 32.9 89.86 36.62 59.28 126.4 113.28 145.22 164.36 136.82 156.52 29.18 39.23 15.32 62.43 69.51 76.32 43.92 53.31 60.18 56.26 57.34 59.62
3.4 4.06 1.02 1.15 1.0 0.88 3.14 0.53 0.81 1.44 39.21 5.47 16.67 6.34 5.07 22.74 17.03 37.3 35.15 24.24 33.96 4.5 4.8 4.31 16.19 9.22 10.95 8.19 7.56 12.7 9.59 9.6 10.34

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)