Heatmap: Cluster_441 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
0.64 0.66 -0.13 -0.4 -0.36 0.16 0.07 0.52 0.34 0.28 -0.14 -0.01 -0.59 0.08 0.24 -0.52 -0.99 -0.08 -0.72 -0.58 -0.41 0.02 -0.04 -0.3 0.09 0.16 0.14 0.14 0.31 0.11 -0.03 -0.17 -0.02
0.4 0.75 0.29 0.59 0.46 1.03 -0.31 0.74 0.77 0.84 -0.12 -0.5 -0.78 -0.46 -0.59 -0.53 -1.01 -0.6 -0.46 -0.43 -0.36 -0.55 -0.68 -1.01 -0.51 -0.58 -0.51 0.04 0.1 0.19 0.08 -0.24 0.21
1.14 1.62 0.05 -1.01 -1.5 -1.28 1.49 -0.13 -2.34 0.1 0.13 1.14 0.53 1.33 - -3.58 -1.64 - -1.94 -2.85 0.25 1.25 1.85 -0.47 0.91 -0.44 0.14 -3.03 -2.54 -3.47 -4.0 -6.24 -1.77
0.78 1.24 0.12 0.51 0.36 0.93 -1.13 1.51 1.13 1.59 -1.26 -1.62 -2.37 -0.18 -1.16 -0.68 -1.81 -0.2 -0.62 -0.46 -0.65 -1.07 -1.36 -1.21 -1.97 -0.89 -0.95 0.26 0.16 0.05 -0.22 -0.32 0.05
0.82 1.1 0.01 -0.38 -0.27 -0.08 0.54 0.25 0.44 0.44 -0.28 0.27 -0.29 0.29 -1.09 -0.19 -1.06 -0.29 -0.54 -0.68 -0.57 0.18 0.68 0.84 -0.13 -0.19 -0.33 -0.9 -0.08 -0.14 -0.86 -1.37 0.04
0.65 1.14 0.56 0.1 0.18 0.49 0.02 0.8 0.53 1.13 -1.77 -0.12 -0.42 0.38 -1.36 -1.43 -1.07 -1.35 -1.39 -0.93 -0.91 0.14 0.04 -0.58 -0.5 -0.27 -0.3 -0.59 0.54 0.37 -0.22 -0.4 0.34
0.63 0.87 0.51 0.47 -0.08 -0.11 0.5 0.44 0.94 0.48 -0.84 -0.49 -0.07 -0.56 -0.81 -0.77 -0.62 -1.01 -1.03 -1.28 -1.01 -0.01 0.1 0.32 -0.33 -0.14 -0.18 -0.17 0.27 0.39 0.02 -0.25 0.14
0.96 0.78 0.62 0.67 0.82 0.44 -0.42 1.22 0.96 0.87 -1.09 -0.53 -2.78 -0.62 -0.81 -1.4 -0.94 -0.59 -1.13 -1.78 -1.44 -1.56 -1.86 -2.23 -1.07 -0.72 -0.54 0.24 0.72 0.7 0.23 0.33 0.62
0.44 0.39 0.17 -0.06 0.22 0.33 -0.05 0.54 0.27 0.63 0.17 -0.02 -0.41 -0.27 -0.45 0.12 -0.82 0.43 -0.15 -0.07 -0.08 -0.38 -0.76 -0.75 -0.36 -0.12 -0.13 -0.37 0.1 0.38 -0.31 -0.41 0.21
0.94 1.18 -0.12 -0.29 -0.38 0.04 -0.44 0.62 0.44 0.41 -0.03 -0.09 -0.23 0.31 -0.38 -0.55 -0.69 -0.32 -0.4 -0.45 -0.5 0.07 0.54 -0.44 -0.24 0.11 0.05 -0.46 0.01 -0.06 -0.34 -0.86 -0.03
0.81 0.82 0.08 -0.51 -0.43 -0.19 0.12 0.51 0.32 0.38 -0.43 0.25 -0.5 0.48 0.18 -0.1 -0.94 -0.03 -0.31 -0.61 -0.12 -0.04 -0.1 -0.36 -0.47 -0.05 -0.14 -0.06 0.14 -0.02 -0.02 -0.31 -0.09
0.55 0.71 0.34 0.13 -0.04 0.16 0.03 0.34 0.23 0.62 -0.67 0.04 0.09 -0.04 -0.91 -0.58 -0.49 -0.53 -0.79 -0.89 -0.69 0.29 0.27 0.03 -0.18 0.11 0.14 -0.14 0.12 0.14 -0.27 -0.28 0.21
0.89 0.71 0.17 -0.13 0.17 0.05 1.3 0.52 0.08 -1.12 -0.9 0.37 -0.1 0.44 -0.79 0.06 -0.2 0.45 0.36 -0.07 -0.18 0.22 0.87 0.14 -0.27 -0.09 -0.48 -1.96 -1.17 -1.76 -0.94 -1.84 -1.22
0.87 0.92 0.64 0.56 0.4 0.24 -0.29 0.63 0.6 0.44 -0.99 -0.5 -0.55 -0.88 -0.25 -1.01 -0.23 -1.16 -0.78 -1.23 -0.8 -0.53 -0.19 -0.73 -0.53 0.53 0.36 -0.04 0.15 0.16 0.03 -0.15 0.17
2.28 2.35 -0.73 -1.89 -2.36 -3.32 2.93 0.6 2.0 0.22 -5.71 -0.61 - -4.02 - - -10.78 - - -5.7 - -4.08 -6.73 - - 1.76 1.33 -2.67 -3.01 -3.84 -3.79 -3.46 -1.45
1.37 1.02 0.9 0.34 0.66 0.87 -0.05 1.13 1.02 0.55 -1.1 -0.66 -0.72 -0.7 -1.01 -1.5 -0.94 -1.23 -1.21 -1.24 -1.23 -0.55 -0.16 -0.69 -0.46 -0.27 -0.34 -0.27 0.11 -0.1 -0.28 -0.59 -0.1
0.83 0.65 0.53 0.31 0.08 -0.04 0.14 0.51 -0.05 0.01 -1.54 0.2 -0.4 0.36 -0.57 -0.51 -0.61 -0.81 -1.62 -1.46 -1.68 0.22 -0.04 0.46 0.53 -0.02 -0.02 -0.31 0.08 0.39 0.01 -0.18 0.39
0.96 0.89 0.65 0.45 0.63 0.71 0.62 1.17 1.16 1.07 -0.86 -0.2 -1.79 -0.38 -0.68 -0.71 -2.39 -1.41 -1.11 -1.78 -1.08 -0.82 -1.81 -3.36 -1.01 0.64 0.44 0.2 -0.76 -0.96 0.15 -0.1 -0.33
0.71 0.91 0.42 0.49 0.18 0.57 -0.28 0.86 0.53 1.03 -1.08 -1.13 -0.4 -2.63 -0.65 -0.92 -0.7 -0.76 -1.18 -1.06 -1.2 -1.14 -0.26 -0.2 -0.66 -0.4 -0.3 0.37 0.64 0.43 0.4 0.07 0.57
0.83 0.89 0.19 0.08 -0.14 0.46 0.12 0.56 0.71 0.58 -0.78 0.11 -0.07 -0.22 -0.97 -0.84 -0.71 -0.36 -0.94 -1.0 -0.46 0.16 -0.12 -0.6 0.13 -0.58 -0.49 0.05 0.02 0.24 -0.06 -0.4 0.47
0.83 1.11 0.59 0.33 0.07 0.3 0.26 0.14 0.49 1.05 -0.8 0.23 -0.42 -0.26 -1.01 -0.44 -1.09 -0.94 -0.32 -0.71 -0.65 -0.13 0.4 -0.51 -1.06 0.2 0.12 -0.42 0.14 -0.08 -0.47 -0.8 -0.2
1.22 1.4 0.62 0.24 0.7 1.35 -0.16 0.96 0.74 1.67 -1.01 -0.04 -1.81 -0.57 -0.74 -2.52 -2.32 -1.03 -0.77 -0.92 -1.1 -0.6 -0.71 -1.11 -1.18 -0.45 -0.49 -0.9 0.49 -0.1 -0.79 -1.35 -0.92
1.03 0.76 0.36 -0.22 -0.04 0.3 -0.04 0.68 0.44 -0.1 -0.42 -0.29 -0.77 -0.34 0.76 -0.3 -0.87 -0.38 -0.64 -0.62 -0.42 -0.33 -0.21 -0.84 -0.39 0.11 0.03 0.09 0.26 0.08 0.08 -0.29 -0.03
0.7 1.19 -0.12 -0.3 -0.51 0.17 -0.08 0.43 0.18 0.51 -0.83 -0.23 0.12 0.29 -0.9 -0.56 -0.94 -0.81 -0.78 -0.58 -0.81 0.16 0.4 0.5 -0.86 -0.02 0.08 0.0 0.29 0.3 -0.02 -0.3 0.17
1.33 0.64 0.82 0.26 0.58 0.54 0.26 0.92 0.87 0.29 -0.84 -0.24 -0.78 -0.96 -0.92 -1.0 -0.35 -1.13 -1.32 -1.34 -1.22 -0.24 -0.32 -0.93 -0.06 0.29 0.33 -0.57 0.17 0.04 -0.54 -0.64 0.13
0.91 0.84 0.77 0.48 0.5 0.99 0.56 0.7 0.6 1.15 -0.58 0.21 -2.66 -0.73 -0.71 -0.98 -1.88 -0.31 -0.24 -0.68 -0.34 -1.74 -1.51 -2.47 -1.21 0.11 -0.03 -1.98 -0.17 0.72 -1.87 -1.35 1.14
1.01 1.16 0.23 0.01 0.27 -0.17 0.41 0.49 0.33 0.19 -1.03 0.07 -0.23 -0.38 -1.03 -1.32 -0.76 -0.97 -1.29 -0.67 -0.83 0.21 0.58 -0.64 -0.77 0.21 0.28 -0.07 0.25 0.29 -0.04 -0.33 0.25
0.93 1.07 0.58 0.48 0.18 0.04 -0.25 0.67 0.43 0.33 -0.71 -0.49 -1.26 -0.54 -0.95 -1.27 -1.19 -0.85 -1.24 -0.73 -0.77 -0.6 -0.66 -1.53 -1.52 0.42 0.37 0.28 0.68 0.66 0.22 -0.07 0.85
1.03 1.13 -0.13 -0.45 -0.12 0.45 -0.4 0.54 0.62 0.37 -0.79 -0.57 -0.58 -0.33 -0.78 -1.17 -0.81 -1.01 -1.0 -1.13 -1.07 -0.2 0.5 -0.58 -0.75 0.32 0.19 0.18 0.69 0.62 0.21 -0.42 0.52
0.63 0.83 0.24 0.01 0.23 0.25 -0.77 0.91 0.76 0.94 -1.03 -0.81 -1.05 -0.44 -1.13 -0.82 -0.84 -0.49 -0.97 -0.51 -0.88 -1.22 -0.27 -0.8 -1.24 -0.14 -0.24 0.4 0.77 0.69 0.25 0.11 0.84
1.02 0.82 0.76 0.22 0.72 0.29 -0.17 0.76 0.54 -0.55 -0.9 -1.18 0.19 -1.54 -1.04 -1.38 -0.23 -1.89 -1.27 -1.98 -1.49 -0.19 0.1 0.07 -0.06 0.04 0.13 0.36 0.31 0.23 0.22 0.22 0.22
0.7 1.05 0.0 -0.2 -0.3 -0.31 -0.19 0.41 0.26 0.28 -0.93 -0.3 0.46 -0.3 -0.62 -1.09 -0.26 -1.01 -1.2 -1.17 -1.11 0.23 0.87 1.08 -0.28 -0.12 -0.15 -0.21 0.28 0.25 -0.12 -0.56 0.32
0.62 0.6 0.06 0.07 0.19 0.68 -0.53 0.85 0.67 0.86 -0.41 -0.29 -0.77 -0.12 -0.3 -0.7 -0.48 -0.42 -0.56 -0.5 -0.22 -0.15 -0.26 -1.48 -0.18 -0.38 -0.33 -0.23 -0.13 0.43 -0.13 -0.02 0.52
0.92 0.96 0.46 0.08 0.07 -0.05 -0.17 0.86 0.47 0.36 -0.82 -0.51 -0.58 -0.49 -0.03 -0.71 -0.4 -0.71 -0.78 -1.2 -0.83 -0.43 0.11 -0.68 -0.04 -0.07 0.04 -0.22 0.42 0.55 0.02 -0.5 0.47
0.97 1.36 0.16 -0.07 -0.03 0.11 0.28 0.32 0.15 0.21 -0.53 -0.32 -0.82 -0.32 0.69 -0.31 -1.28 -0.55 -0.53 -0.36 -0.43 -0.08 0.02 -1.1 -0.82 0.18 0.12 -0.1 0.26 0.09 -0.21 -0.57 0.09
0.6 0.51 0.38 0.08 0.16 0.51 0.08 0.55 0.38 0.59 -0.53 -0.34 -0.71 -0.13 -0.3 -0.53 -1.13 0.2 -0.22 -0.06 0.01 -0.07 -0.19 -0.64 -0.7 -0.49 -0.57 -0.17 0.26 0.29 -0.08 -0.03 0.23
0.96 0.67 0.65 0.29 0.79 0.43 -0.54 0.45 0.26 -0.65 -0.73 0.08 -0.24 0.22 0.59 -0.69 -0.3 -1.69 -1.06 -1.33 -0.67 0.08 0.37 -0.55 0.29 -0.68 -0.38 -0.03 -0.01 0.07 -0.07 -0.23 -0.33
0.91 1.47 0.07 0.19 0.1 0.62 -0.26 0.19 0.34 -0.22 -0.67 -0.93 -0.99 -0.45 -1.11 -1.4 -0.54 -0.91 -0.85 -0.63 -0.86 -0.43 -0.05 -0.74 -1.15 0.3 0.35 0.16 0.68 0.79 0.06 -0.2 0.7
1.91 2.46 -0.58 -3.42 - - 1.4 -0.87 -3.21 - -3.38 2.33 - 1.11 -0.28 -3.37 -2.62 0.26 -0.99 -1.37 -2.34 -0.92 - -2.53 0.08 2.29 1.27 - - - - - -
1.45 1.81 -0.25 -0.61 -1.58 -0.98 2.4 -0.07 -0.94 0.37 -5.37 0.68 0.04 -0.95 -2.17 -2.26 -2.44 -1.81 -2.2 -1.53 - 1.29 2.59 -2.42 0.42 -0.92 -0.47 -4.2 - -4.75 -4.13 -4.18 -1.76
0.65 0.68 0.21 -0.02 -0.04 0.54 0.62 0.57 0.55 0.84 -0.58 0.45 -0.89 0.17 0.14 -0.78 -1.03 -0.51 -0.91 -1.08 -0.86 -0.22 -0.2 -0.51 -0.59 -0.13 -0.14 0.09 0.15 -0.13 -0.04 -0.43 0.17
0.01 0.65 -0.49 -0.5 -0.49 -0.06 0.01 -0.14 0.01 0.58 0.26 0.07 -0.39 -0.38 -0.26 -0.93 -0.72 -0.24 -0.28 -0.33 -0.13 -0.13 -0.25 0.73 -0.24 0.11 -0.01 -0.13 0.68 0.69 -0.0 -0.29 0.59
0.76 0.65 0.27 -0.04 -0.02 0.02 0.37 0.38 0.23 0.39 -0.47 0.09 -0.38 -0.08 -0.61 -0.54 -0.82 -0.34 -0.4 -0.56 -0.56 0.06 0.0 -0.75 0.16 0.04 0.08 0.08 0.17 0.12 0.09 -0.15 0.11
0.68 0.57 0.3 -0.12 0.31 0.41 -0.17 0.82 0.73 0.6 -0.75 -0.19 -0.42 -0.21 -0.71 -0.9 -0.49 -0.98 -1.1 -0.86 -0.98 -0.11 0.25 -0.48 -0.55 0.06 0.04 -0.04 0.28 0.47 0.09 -0.21 0.38
0.46 1.13 -0.34 -0.24 -0.39 0.54 0.0 -0.03 0.21 0.79 0.25 0.18 -0.24 -0.34 -1.32 -0.41 -1.15 -0.14 -0.17 -0.24 -0.12 -0.14 0.14 -0.65 -1.0 0.17 0.05 -0.32 0.39 0.4 -0.27 -0.63 0.46
1.2 0.73 0.75 0.28 0.45 0.64 0.19 1.01 1.01 0.3 -1.35 -0.37 -0.79 -0.61 -0.95 -1.95 -0.39 -1.51 -1.35 -1.71 -1.49 -0.57 0.08 -0.96 -0.7 0.06 -0.02 -0.02 0.37 0.27 0.01 -0.25 0.34
0.63 0.89 0.44 -0.41 0.01 0.2 1.14 -0.1 -0.2 -0.04 -0.4 0.32 -0.23 0.35 -0.93 -0.89 -0.17 0.03 -0.49 -0.7 -0.74 0.55 0.93 0.2 0.3 0.09 0.18 -0.72 -1.09 -0.82 -0.98 -0.91 -0.54
0.37 0.55 0.57 0.49 0.49 0.66 -0.23 0.61 0.63 0.83 -0.57 -0.45 -1.04 0.32 -1.23 -0.47 -1.31 -0.25 -0.63 -0.59 -0.11 -0.43 -0.28 -0.16 -0.5 -0.27 -0.45 -0.26 0.38 0.27 -0.25 -0.4 0.27
1.66 1.08 1.29 0.42 0.5 0.04 0.82 1.45 1.45 0.71 -7.11 0.15 -1.61 -0.12 -4.3 -5.21 -1.27 -4.81 -5.65 -6.49 -5.36 0.28 -1.75 0.93 -0.81 0.62 0.35 -0.67 -1.38 -1.38 -0.99 -0.86 -1.12
1.5 1.92 -0.57 -0.34 -0.45 -1.25 0.63 0.36 1.53 0.55 -1.34 0.18 -1.43 0.83 -1.04 -1.43 -1.77 -1.38 -1.67 -1.47 -1.27 0.6 -0.73 -1.83 -0.34 0.55 0.65 -0.24 -0.57 -0.79 -0.56 -0.61 -0.64
0.49 0.81 0.22 0.38 0.48 0.7 -1.27 0.83 0.65 0.84 0.03 -1.51 -2.16 -0.58 -0.51 -0.51 -1.51 -0.01 -0.06 -0.54 -0.25 -1.69 -1.01 -1.96 -1.57 -1.01 -0.96 0.4 0.5 0.64 0.54 0.65 0.66
0.9 0.87 0.37 0.14 0.34 0.5 -0.25 0.73 0.36 0.29 -0.84 -0.18 -0.37 -0.34 -0.29 -0.58 -0.38 -0.77 -0.93 -0.92 -0.83 -0.22 -0.24 -0.31 -0.31 0.3 0.16 -0.03 0.2 0.09 0.09 -0.33 0.05
0.77 0.84 0.54 0.74 0.28 0.54 1.03 -0.08 -0.16 0.33 -1.65 0.32 -0.58 0.31 -1.52 -1.61 -0.75 -1.45 -1.96 -1.97 -2.04 0.54 0.79 0.08 -1.0 0.15 0.08 -0.13 0.14 -0.03 -0.21 -0.32 0.18
1.29 0.94 0.68 0.22 0.55 0.31 -0.11 0.79 0.28 0.35 -0.92 -0.57 -0.86 -0.18 -0.27 -0.9 -0.44 -1.46 -1.01 -0.9 -1.22 -0.2 -0.01 -1.52 -0.32 0.18 0.24 -0.24 0.11 0.27 0.0 -0.22 0.19
0.36 0.32 -0.19 0.03 0.09 0.57 -0.3 0.56 0.61 0.74 -0.47 -0.07 -0.46 -0.12 -0.21 -0.33 -1.14 -0.56 -0.57 -0.5 -0.52 -0.27 -0.01 -0.33 -0.73 -0.17 -0.3 0.01 0.52 0.55 0.27 -0.23 0.54
0.91 1.12 0.55 -0.04 0.04 0.01 0.61 -0.08 0.48 0.19 -0.89 0.42 -0.12 0.67 -0.99 -0.79 -0.61 -0.77 -1.12 -0.99 -1.05 0.47 0.41 0.59 0.21 0.13 -0.07 -0.94 -0.32 -0.37 -0.94 -1.15 -0.28

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.