Heatmap: Cluster_232 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-1.97 -1.56 -1.83 -1.97 -2.47 -1.26 -0.21 -3.95 -4.18 -2.03 -4.22 -0.31 -1.95 -1.25 1.38 -5.02 0.1 -2.81 -3.96 -3.78 -3.54 -1.41 -0.62 -1.5 -0.95 1.22 1.42 1.42 1.27 1.89 1.76 1.13 1.68
-4.74 -5.23 - - -5.99 - -1.75 -4.59 -4.89 -6.01 -2.48 -0.2 1.25 -1.52 - -2.87 -1.2 - -7.14 -7.2 -5.59 0.08 0.04 -2.84 -0.7 -0.21 0.97 1.62 1.64 2.17 1.65 1.95 2.27
-6.57 -6.9 - - -8.27 -6.68 -1.46 - - -4.56 -1.74 0.09 0.67 -0.89 -4.95 -2.81 -0.37 -2.87 -4.34 -3.13 -4.37 0.24 -1.27 -2.28 -0.03 1.08 1.4 1.44 1.36 1.94 1.52 1.69 2.33
-5.25 -8.02 -3.5 -7.01 -5.4 -3.59 -3.69 -3.19 -4.72 -2.31 -0.58 0.19 -2.63 -0.67 -0.39 -0.87 -0.74 -0.15 -1.18 -0.27 -0.21 -2.38 -0.05 -0.89 0.19 0.46 0.89 1.18 1.82 1.73 1.14 1.48 2.2
- -4.87 - - -5.21 - -1.04 - - - -2.22 1.66 -0.94 0.64 1.55 -1.42 -1.53 - -2.74 -3.54 -2.29 0.8 -2.35 -1.83 0.25 0.62 1.03 0.84 1.64 2.0 1.03 0.89 1.65
-3.54 -1.99 -4.06 -3.91 -4.44 -6.21 0.78 -4.17 -4.96 -6.67 -1.83 1.4 0.83 0.08 - -4.14 -0.47 -4.98 -3.5 -2.9 -3.79 1.19 -1.93 -1.28 1.09 0.17 0.14 0.18 1.56 2.07 0.28 0.76 2.41
-6.31 -5.94 -4.88 -4.33 -5.8 -4.75 -4.56 -3.94 -4.62 -3.29 0.26 -0.08 -3.59 -1.77 -0.34 -0.19 -0.21 -0.28 -0.3 0.14 -0.01 -2.37 -0.21 -3.53 -0.25 0.86 1.07 1.05 1.5 1.9 1.15 1.4 2.14
-0.87 -0.14 -1.13 -0.82 -0.82 -0.43 -1.5 -1.49 -1.49 -1.57 -0.99 -2.32 -3.88 -1.37 -2.0 -2.17 -1.02 -0.51 -1.73 -2.31 -2.19 -2.61 0.46 -3.57 -2.45 0.23 1.09 1.48 1.98 1.72 1.06 1.67 1.95
-4.14 -3.19 -2.91 -5.19 -3.5 -5.12 -0.61 -2.52 - - -5.95 -1.3 -0.6 -0.04 -1.99 -1.76 -0.68 0.13 -0.7 -0.04 0.62 -0.27 0.02 -0.6 -0.95 -0.06 0.31 1.4 1.35 1.57 1.5 1.0 2.6
- -3.88 -3.62 - -5.33 - - - -2.9 - 0.6 - -2.16 - -1.07 -0.52 -0.53 -0.68 -0.25 -2.17 -0.1 -3.17 - - -2.04 -1.37 -1.91 1.58 1.73 1.92 0.91 2.14 3.18
-4.61 -2.77 - - -3.74 -4.06 -0.57 - - - -5.0 0.79 -0.96 1.19 - -2.99 -5.95 -2.24 - -4.0 - -0.7 - - -0.22 -1.88 0.28 1.67 1.59 2.63 2.02 1.89 1.98
-1.93 -0.35 -1.15 -2.32 -3.09 -3.01 -0.1 - - - - 1.48 -0.57 0.66 - - -7.75 - - -2.97 -0.87 0.19 - -2.13 0.82 -1.28 0.98 1.24 1.53 2.23 1.37 1.3 1.96
-6.47 -6.62 - -6.46 - - -2.64 - - - -0.67 -0.07 0.01 -0.9 -0.44 -0.26 -0.6 -4.1 -1.33 -1.4 -2.12 0.14 -0.08 -1.21 0.67 -0.58 -0.04 1.3 1.91 2.03 1.26 0.81 2.63
- - -3.66 - -6.42 - - -3.37 -5.11 -2.92 -0.24 -1.11 - 0.14 0.87 -0.34 -0.29 0.83 -0.49 -0.68 -0.65 -0.01 -1.91 1.47 -1.37 -2.4 -0.13 1.84 1.38 1.52 1.19 1.79 1.44
-1.63 -1.41 -4.6 -4.27 -4.29 - 0.84 - - -4.24 -2.38 1.01 -2.52 -0.01 -4.77 -2.4 -3.35 -3.69 -2.48 -3.86 -3.02 1.32 -0.03 -0.29 -1.48 -0.12 -0.38 1.15 1.71 2.22 1.2 1.36 2.27
0.4 -0.02 -0.4 -0.49 -0.98 0.17 0.02 -1.36 -0.47 -0.43 -1.66 0.72 0.38 -0.26 -3.19 -1.84 -0.33 -2.67 -3.52 -2.5 -3.55 1.06 0.19 -2.1 1.02 -0.75 -0.29 -0.37 0.97 1.65 -0.28 0.24 2.06
-4.54 -5.45 -7.43 - -7.92 - -0.32 -6.24 -6.65 -5.05 -1.51 0.52 1.78 -0.09 -4.91 -3.87 -0.67 -2.84 -4.68 -4.16 -4.49 1.52 -1.69 -1.91 0.57 -0.68 0.64 0.25 1.36 2.07 -0.01 0.78 2.84
-1.32 -3.31 -0.44 -1.36 -1.52 -3.24 0.96 -3.72 -3.47 -3.53 -3.93 0.82 -0.56 0.55 -6.08 -3.85 -1.09 -6.0 -4.52 -3.85 -6.14 1.06 0.72 -0.05 -1.0 -0.23 0.06 0.95 1.47 1.89 1.11 1.16 2.05
-5.3 -3.21 -6.12 -4.34 -4.73 -3.75 -0.27 - - -4.02 -1.83 0.96 -0.05 0.58 0.54 -1.1 -0.54 -2.2 -2.62 -0.99 -2.66 0.72 0.71 -0.45 0.84 0.13 0.23 0.65 1.47 1.7 0.8 0.26 2.28
-2.36 -2.49 -4.66 -4.81 -4.1 -4.24 -0.29 - - -3.25 -2.83 1.28 0.03 0.42 1.02 -0.88 -0.31 -2.03 -2.55 -1.4 -1.36 1.08 0.09 -0.45 0.88 -0.5 -0.52 0.41 1.57 1.54 0.88 0.28 2.21
-4.22 -4.77 -6.17 -5.26 -6.34 -7.0 1.06 -5.9 -6.59 -5.61 -2.46 0.0 -0.38 -1.29 -4.59 -1.83 -1.77 -4.01 -4.21 -3.69 -3.95 0.22 0.01 -0.1 0.04 0.59 0.31 1.28 1.6 1.91 1.3 1.62 2.55
-2.26 -2.26 -3.06 -3.0 -2.34 -1.43 0.6 -2.96 -2.78 -2.09 -1.88 0.31 0.48 -1.46 -3.27 -1.41 -0.23 -1.89 -2.88 -2.89 -3.34 -1.67 0.49 -1.48 1.33 -0.01 0.06 0.58 1.83 2.14 0.26 0.98 2.4
-8.7 -9.43 - -9.41 - - -1.81 - - - -4.82 -0.06 -0.84 -1.25 -2.16 - -1.51 - -7.66 -6.72 -7.69 0.86 -0.98 -0.49 0.19 0.06 -0.66 1.79 0.71 1.88 1.39 2.24 3.03
-0.78 -1.04 -1.23 -0.8 -1.38 -0.31 0.37 -1.74 -2.02 -0.43 -4.34 -0.48 -2.11 -0.39 1.94 -4.99 -0.4 -1.87 -5.34 -2.6 -3.79 -0.8 0.01 -0.49 -0.65 0.4 0.81 1.02 1.05 1.53 1.39 1.02 1.37
-1.42 -2.04 -2.32 -2.58 -2.4 -1.9 0.05 -2.33 -2.92 -2.9 -1.42 -0.15 -0.39 -0.09 -0.75 -0.69 -0.24 -1.12 -0.41 -0.96 -0.6 -0.06 0.13 -0.25 -1.21 0.01 0.74 1.19 1.93 1.65 1.34 1.06 1.48
-5.88 -5.11 -7.73 -5.78 -5.86 -4.33 0.06 -6.5 - -5.79 -2.39 -0.22 -1.95 -2.17 -6.16 -4.67 0.45 -2.77 - -4.26 - -1.25 -1.33 -6.42 -1.43 1.37 1.94 1.46 1.65 2.1 1.49 1.4 2.44
- - - - -6.4 - -2.71 - -7.08 -6.1 -1.21 0.5 0.53 -0.02 -2.66 -0.9 -0.63 -2.79 -1.45 -2.3 -0.87 -1.11 0.83 -2.75 1.14 -1.33 -0.73 0.59 1.97 2.63 0.3 0.75 2.54
-6.18 -5.21 -5.89 -5.87 -5.24 -7.45 0.15 -6.14 -5.5 -5.4 -0.96 0.76 0.32 0.3 1.22 0.69 0.01 -0.65 -0.29 0.04 -0.22 0.55 0.81 -0.13 -0.32 -0.64 -0.92 0.46 1.3 1.32 0.73 0.38 1.75
- - - - - - - - - - - - -6.56 - - - -1.11 - - - - -6.01 -2.61 -7.32 - -1.62 0.32 2.37 2.61 2.64 2.48 2.27 1.52
- -9.27 - - -8.81 -7.68 -8.49 - - - -7.57 -7.48 -5.95 -6.47 -5.88 - -0.74 - -7.5 - - -5.03 -1.55 -6.14 -5.85 -1.59 -0.19 2.56 2.54 2.48 2.65 2.34 1.1
-6.62 -8.01 -8.44 -8.99 -7.85 -7.42 -1.29 - -6.69 -6.51 -1.31 -0.18 0.05 -0.41 -7.21 -2.05 -0.88 -3.67 -4.24 -2.84 -3.81 -0.29 -4.75 -4.88 -1.19 1.41 1.37 1.74 1.24 1.91 1.82 2.01 2.25
0.09 -0.23 -0.7 -1.23 -0.92 0.01 0.36 -0.33 -0.13 -0.56 -2.94 0.05 0.53 -0.78 - -2.04 0.45 - -3.49 - -7.11 -0.1 -0.42 -1.77 -0.12 -0.62 -0.39 0.62 1.71 1.95 0.49 -0.53 2.28
-0.84 -0.79 -1.06 -1.26 -0.78 -1.0 0.47 -0.72 -1.48 -1.5 -0.16 0.66 -0.53 0.27 -0.57 -0.97 -1.12 0.15 -1.37 -0.29 -1.15 -0.39 -0.52 -0.27 -0.03 -0.29 0.2 0.97 1.01 1.07 1.06 1.2 1.45
- - - - - - - - - - - - -7.2 - - - -0.34 - - - -6.18 -7.05 2.09 - - -1.2 0.87 1.78 2.87 2.14 1.91 1.81 1.7
-0.94 -1.2 -1.06 -1.03 -1.0 -0.77 -0.36 -0.39 -1.35 -1.07 -0.38 -0.48 -0.96 -0.07 -0.6 0.02 -0.83 0.47 -0.13 -0.44 -0.26 -0.24 -0.47 -0.19 -0.61 -0.45 -0.13 1.19 1.14 1.09 0.86 0.6 1.93
-0.97 -0.7 -0.82 -1.9 -0.99 -0.49 -0.06 -0.56 -1.64 -2.09 -0.79 0.44 1.01 0.12 0.29 0.2 -0.75 -0.07 -0.76 -0.69 -0.06 0.82 -0.67 -1.03 0.57 -1.07 0.77 0.43 0.58 0.72 0.97 0.58 1.01
-3.94 -3.21 -5.76 -5.4 -5.63 -5.78 -0.38 -3.68 - -5.32 -1.41 -0.39 -0.56 0.82 -0.92 -0.71 -0.09 -1.27 -1.33 -0.36 -0.95 0.3 -0.21 -0.8 -0.74 0.91 1.02 1.43 1.32 1.61 1.55 1.12 1.84
-1.61 -1.99 -2.42 -2.47 -3.27 -2.01 0.55 -3.6 -3.31 -3.17 -0.61 1.37 0.98 0.46 -2.14 -0.85 -0.42 -1.53 -3.11 -1.23 -2.73 1.58 -0.25 -1.57 1.5 -0.41 -0.13 -0.32 0.95 1.69 0.01 0.29 1.97
-3.89 -4.13 -7.65 -8.64 -7.48 -7.06 0.23 - - -4.15 -0.39 0.81 1.12 0.22 -0.02 -0.66 0.03 -0.42 -0.09 0.05 0.52 0.64 0.78 0.02 0.29 -1.0 -0.65 0.68 1.16 1.19 0.82 0.77 1.45
- - - - - - -5.44 - - - - -3.2 -3.74 - - - -0.64 - - - - -3.48 - - - 1.26 1.45 1.97 1.7 2.04 2.08 2.41 2.6
-4.41 -4.25 - -8.07 - -4.86 -1.47 -5.56 - - -1.6 -2.05 -1.75 -0.77 -1.83 -1.57 0.3 -2.51 -3.51 -1.43 -2.18 -1.17 -2.16 -1.22 -1.16 1.5 1.23 1.13 1.5 2.18 1.83 1.57 2.47
-0.37 -1.78 -2.15 -2.45 -1.44 -2.56 0.76 -2.66 -2.66 -1.68 - -0.0 -4.45 -3.39 0.86 - -0.17 - -2.42 - - -1.46 -0.26 -2.64 -1.18 0.68 1.03 1.64 1.36 1.85 2.02 1.39 1.68
-1.75 -1.49 -2.09 -2.09 -2.04 -1.84 1.48 -1.32 -1.38 -1.43 -2.17 0.07 -0.39 -1.36 -3.45 -1.45 -2.14 -2.61 -3.48 -4.19 -4.51 0.65 -0.45 0.16 0.25 0.38 0.17 1.02 1.37 1.62 0.95 1.33 2.26
-7.05 -3.16 -5.85 -4.28 - - -0.68 -4.38 -3.19 - 0.69 0.63 1.56 -0.36 -0.82 -2.08 -0.8 0.76 -0.79 -1.12 -0.55 0.8 -2.44 -2.4 1.68 -0.13 -0.21 -0.24 0.79 1.89 0.62 0.42 2.05
-7.36 -8.09 - - - -5.45 -5.99 - - - -0.39 -1.62 -3.73 -3.7 -2.53 -0.95 -0.22 -0.82 -0.83 -1.43 -0.98 -3.55 0.03 -5.54 -1.23 1.36 1.61 1.01 1.71 2.18 1.21 1.51 2.59
- - -8.2 - -8.14 -5.01 - -5.61 -5.8 - -0.12 -1.28 - -2.63 -1.34 -1.3 -0.21 -2.02 -1.92 -2.09 -1.95 -2.16 -5.92 -3.47 -3.76 0.91 1.38 0.91 1.93 2.47 1.46 1.88 2.64
-5.61 -4.38 -6.86 - -8.94 - -1.77 - -9.01 -4.34 -0.62 -0.51 -0.49 -2.2 -8.08 -1.43 -1.78 -1.74 -3.59 -2.5 -3.9 -0.44 0.22 -3.81 0.04 -0.08 0.28 1.61 1.68 2.11 1.65 1.77 2.75
- - - - - - -5.37 - - - -0.23 0.15 0.9 -2.01 0.9 0.24 -0.54 -0.04 0.27 -0.07 -0.32 0.25 0.06 -1.32 0.44 -0.9 -0.35 1.05 1.62 1.59 1.26 0.84 1.83
-4.1 -4.15 -6.98 -5.8 -5.62 -7.34 1.13 -4.94 -6.15 - -2.42 -0.07 0.14 -1.67 -4.86 -2.28 -1.26 -2.96 -4.1 -3.61 -2.9 0.36 -0.33 0.48 0.35 0.49 0.1 1.32 1.5 1.84 1.29 1.6 2.43
- -6.57 - - -5.08 - -1.73 - - - - -0.77 0.89 -0.96 -3.18 - 0.53 -3.11 - -4.86 -4.83 0.3 -0.64 -3.43 0.76 -0.19 1.03 1.48 1.74 2.41 0.61 1.07 2.66
- - - - -4.78 - -3.59 -3.34 -3.97 - - - - - - - -1.45 - - - - - -2.69 -1.4 - -0.34 0.84 1.78 2.58 2.84 1.82 1.78 2.51
-3.97 -2.18 -4.1 -3.03 -3.57 -3.05 -0.19 -4.4 -2.06 -2.54 0.2 0.79 -1.79 0.16 -1.11 -1.43 -1.19 1.12 -3.89 -0.64 -0.6 -0.02 -2.99 -1.36 0.06 0.41 -0.22 1.15 1.64 1.58 1.41 1.18 1.97
-6.54 -6.63 - - - - 0.28 - -7.24 - -0.24 0.45 -0.34 0.48 -1.63 -0.4 -0.44 -0.6 0.49 -0.11 0.28 -1.18 -0.54 -3.97 0.43 0.41 0.33 0.6 1.1 1.94 0.73 0.81 2.4
-5.12 -6.1 -4.98 -5.44 - - -0.63 - - - -1.82 0.11 -2.4 -1.33 -2.65 -2.74 -0.54 -0.03 -2.46 -1.75 -1.21 -0.67 -0.27 -3.91 0.01 0.39 0.23 0.95 1.08 2.3 1.48 2.01 2.73
-1.53 -1.53 -3.33 -4.59 - - -2.83 -2.66 - -1.32 -1.16 0.44 -0.23 - -0.63 -1.89 -0.39 - 0.97 -0.73 -0.7 -1.41 0.77 1.19 -0.18 -0.11 0.58 1.45 1.92 1.81 1.1 0.95 1.11
-5.87 -3.61 -4.03 - -5.98 -6.3 -0.28 -6.94 -7.58 -5.78 -0.21 0.7 0.08 -0.67 -1.84 -1.73 -1.47 -1.92 -3.39 -2.8 -2.42 -0.01 -0.56 -2.02 0.21 -0.06 0.61 1.42 1.46 1.93 1.55 1.57 2.44
-6.09 -4.84 -7.55 - -7.39 - - -5.07 -5.69 - -3.39 - -7.1 - - - -1.52 -5.94 - - - - -0.4 -6.27 - -1.44 0.8 2.16 2.57 2.46 1.89 2.33 2.29
-2.51 -2.11 -4.94 -4.25 -3.82 -3.59 -4.43 -1.99 -0.57 -0.91 -2.6 -3.38 -2.57 - - -1.73 -1.93 - - - - -0.2 -2.5 -2.63 -2.6 1.0 1.41 0.77 1.71 2.59 1.82 2.18 2.25
-4.25 -3.01 -4.69 - -6.61 -2.99 -2.24 - -1.53 -2.82 -4.33 0.27 - - - - -0.8 - - - - -0.59 -4.49 - - 1.1 1.66 0.66 1.79 2.55 1.73 2.19 2.42
-4.22 -3.85 -6.04 -4.96 -5.87 -6.51 -0.14 -5.29 - -5.81 -0.36 -0.38 -0.87 -1.01 -1.01 -0.07 -0.63 -1.39 -0.36 -0.2 0.01 -0.45 -0.59 0.05 -0.66 -0.03 -0.05 1.47 1.67 1.56 1.28 1.15 2.48
-1.05 -1.78 -3.83 - -2.34 -2.51 0.13 - - - 0.13 0.28 -0.36 1.29 -0.3 0.42 -1.03 -1.23 -0.01 0.19 0.64 0.24 0.16 0.25 -2.26 -0.89 0.54 0.75 1.02 1.55 0.9 0.59 1.44
-2.98 -4.71 -5.4 - -6.67 - -1.77 - - - -5.56 0.4 -1.36 -0.86 -2.82 - -2.81 - - - - 0.72 -1.51 -0.27 0.06 -0.07 -0.79 1.86 0.81 1.94 1.44 2.27 2.95
- - - - - - - - - - - - - - - - -0.21 - - - - - -2.74 -2.87 - -0.22 1.37 2.17 2.28 2.67 2.15 2.03 2.06
-6.35 -7.66 -8.42 - -8.18 - -2.16 - - - -0.43 0.12 -0.14 -0.9 0.59 -0.95 -0.86 -0.61 -0.36 -1.12 -0.58 -0.24 0.41 -1.68 0.19 -0.75 -0.27 1.31 1.91 1.88 1.4 0.84 2.3

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.