Heatmap: Cluster_422 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-7.37 -10.28 -6.87 -11.25 -10.49 -7.95 -0.88 - - - 1.36 0.48 0.68 -0.39 1.75 0.75 1.09 0.93 1.65 1.43 1.6 -1.54 -1.57 -1.34 0.29 0.65 0.72 -1.2 -2.03 -1.49 -0.95 -0.17 -2.24
-5.33 -5.51 -6.14 -6.34 -6.22 - 0.05 -6.11 -8.21 -5.91 1.04 0.17 0.76 0.13 1.02 1.48 1.37 -0.0 1.17 0.81 1.18 -0.2 -0.03 0.44 0.43 0.33 0.37 -0.41 -0.29 -0.74 -0.59 -0.8 -0.47
-1.58 -1.33 -2.41 -2.13 -2.43 -1.94 -1.1 -2.79 -3.19 -2.03 1.09 -0.33 0.88 -0.47 1.17 0.58 1.51 0.44 0.51 0.85 0.6 0.71 0.29 -0.26 1.18 0.48 0.72 -1.46 -1.15 -0.46 -1.21 -0.63 -0.64
-2.46 -2.81 -3.1 -3.44 -3.56 -4.52 -0.09 -4.01 -4.39 -3.98 0.98 0.15 0.35 0.09 1.28 1.32 1.33 0.33 0.94 0.7 0.9 -0.35 0.34 0.07 0.92 0.69 0.66 -0.71 -0.64 -0.9 -0.87 -0.98 -0.59
-0.86 -1.27 -1.36 -1.26 -1.49 -1.78 0.13 -1.59 -1.26 -2.08 0.83 0.27 0.62 -0.28 1.2 0.8 1.07 0.56 0.82 1.03 0.61 -0.42 -0.2 -0.01 0.65 0.41 0.26 -0.73 -0.58 -0.79 -0.96 -1.0 -0.64
-6.14 -4.98 -8.77 -6.92 -10.22 -8.13 -5.07 - -10.95 - 1.26 -0.16 0.59 -0.36 1.61 1.54 1.05 1.47 1.35 1.08 1.27 0.25 0.31 -0.39 0.94 0.57 0.81 -2.09 -3.72 -3.24 -1.77 -1.79 -3.31
-1.44 -1.5 -2.5 -2.11 -1.29 -1.75 -0.83 -2.68 -2.89 -1.47 0.91 -0.45 0.31 0.19 0.33 0.83 1.32 0.78 1.17 1.03 0.92 -0.13 -0.24 -0.23 0.31 0.31 0.42 -0.39 -0.31 -0.03 -0.28 -0.16 -0.28
-3.81 -3.39 -4.1 -5.2 -4.24 -2.99 0.71 -4.07 -4.56 -6.88 0.19 0.87 0.44 1.0 0.34 1.17 1.07 0.58 0.92 0.79 0.71 1.02 0.94 0.6 -0.1 0.07 0.4 -1.04 -0.81 -0.67 -0.76 -1.01 -0.73
-4.5 - - -4.83 -5.9 -4.79 0.86 - - -3.44 1.74 1.04 0.78 0.62 -0.81 0.09 1.24 0.7 0.43 -0.02 -0.23 0.39 0.71 -3.29 1.27 0.89 1.08 -1.2 -0.88 0.14 -0.91 -1.42 0.09
-3.85 -4.09 -4.26 -3.76 -4.34 -4.24 -0.2 -5.02 -5.81 -4.54 1.38 0.26 0.53 -0.62 1.18 1.28 0.68 1.25 1.28 1.66 1.25 -0.36 -0.74 -1.64 0.37 0.26 0.42 -0.89 -0.98 -0.72 -0.78 -0.63 -0.43
-4.9 -6.0 -4.94 -8.31 -5.85 -5.92 -0.54 -8.57 -8.54 -5.2 1.6 0.26 0.2 -0.37 1.68 0.7 1.1 1.37 1.44 1.27 1.48 -1.93 -2.42 -1.36 0.27 0.71 0.85 -1.19 -1.97 -1.1 -0.77 0.09 -2.14
-3.88 -4.55 -4.71 -4.86 -4.46 -4.69 -2.6 -5.32 -4.68 -6.69 0.54 -0.35 0.17 -0.88 0.08 0.72 1.55 0.64 1.54 0.8 1.33 -0.66 -1.2 -1.13 0.73 0.56 0.71 0.19 0.75 0.72 0.25 -0.11 0.45
- - -7.32 - -6.47 - -0.91 -4.43 - - 0.38 0.85 1.02 0.13 0.5 0.92 1.19 0.76 1.24 1.18 1.41 1.03 1.47 -0.96 0.77 0.15 0.68 -2.72 -1.57 -0.85 -1.46 -1.96 -2.37
-4.14 -2.94 -4.32 -3.38 -2.92 -3.53 -0.2 -0.14 -2.46 -1.73 0.33 0.21 1.23 0.38 -0.72 0.51 1.83 0.17 0.47 0.97 0.69 0.63 1.04 -0.49 0.47 0.65 1.11 -1.52 -0.95 -0.16 -1.28 -1.3 -1.23
-4.41 -4.08 -4.82 -5.32 -5.21 -4.82 0.99 -5.6 -6.3 -4.96 -0.35 1.15 1.29 1.24 -0.04 -0.01 1.18 -0.07 -0.01 0.09 0.05 1.49 0.87 0.98 0.09 0.27 0.69 -0.74 -0.48 -0.2 -0.69 -1.07 -0.28
-1.51 -1.71 -1.51 -1.99 -1.69 -1.51 0.15 -1.92 -2.02 -2.49 0.76 0.67 0.57 0.66 -0.01 0.59 0.98 1.02 0.82 0.71 0.84 0.36 0.87 -1.15 0.52 0.38 0.71 -1.34 -0.91 -0.6 -1.12 -1.37 -0.19
-2.26 -2.64 -3.44 -3.47 -2.57 -2.22 -2.3 -2.41 -2.32 -3.77 1.0 -0.18 0.29 -0.36 0.1 0.86 1.39 1.12 0.95 0.68 0.98 -0.77 -1.42 -1.0 0.68 0.23 0.61 0.16 0.69 0.59 0.26 -0.21 0.35
-1.36 -1.59 -1.59 -1.25 -1.36 -1.4 -0.01 -2.36 -2.55 -1.88 1.18 0.03 0.45 0.27 0.29 0.6 1.22 0.96 0.74 1.01 0.88 -0.02 -0.82 0.0 0.7 0.67 0.76 -0.88 -0.94 -0.54 -0.82 -1.27 -0.95
-1.6 -1.85 -1.13 -0.74 -1.12 -0.67 -0.6 -1.52 -1.93 0.11 0.76 -0.08 -0.37 0.61 0.98 0.65 0.75 0.96 0.72 0.61 0.68 -0.09 -0.64 -0.91 0.03 0.18 0.46 -0.24 -0.2 -0.07 -0.2 -0.27 -0.0
-2.4 -1.62 -2.7 -2.57 -2.7 -2.22 0.35 -3.13 -2.58 -2.26 0.63 0.88 0.47 1.33 0.05 0.6 0.98 0.49 0.59 0.32 0.57 0.92 0.58 -0.47 0.25 0.15 0.54 -0.3 -0.56 -0.2 -0.29 -0.28 -0.53
-6.49 -5.23 -6.09 - -4.42 -4.17 0.65 -3.23 -6.32 -6.21 -0.2 0.93 -0.36 1.08 0.52 -0.07 1.54 0.66 0.11 0.9 0.65 0.44 0.66 -0.36 0.14 0.63 1.01 -0.04 0.12 -0.13 -0.03 -0.51 0.04
-5.71 -6.7 -6.44 -8.14 -5.59 - 0.55 -7.21 - - -0.19 0.79 0.74 0.59 -0.63 0.57 1.39 0.68 0.07 0.8 1.21 0.59 0.34 -0.1 -0.11 0.8 1.12 -0.72 0.28 0.3 -0.5 -0.48 0.3
-9.25 -10.32 -9.64 -7.5 -7.55 -7.68 -9.54 -7.29 -5.65 -6.36 1.57 -0.37 0.42 -0.08 1.25 1.38 1.46 1.4 1.36 1.12 1.32 1.29 -0.77 -1.55 1.1 0.32 0.44 -1.8 -4.28 -4.14 -2.45 -0.73 -4.29
-1.74 -1.77 -1.57 -1.77 -1.59 -1.57 0.19 -2.71 -2.59 -2.19 0.66 0.13 0.03 0.42 0.33 0.89 0.99 0.63 0.34 0.18 0.32 0.34 0.1 -0.26 -0.05 0.4 0.61 0.45 0.39 0.21 0.28 -0.16 0.21
-3.27 -3.5 -2.5 -1.98 -1.71 -0.96 -0.19 -2.48 -1.35 -1.71 0.64 0.73 0.95 0.53 -0.49 0.29 1.39 0.06 -0.01 0.5 -0.05 0.66 1.25 0.1 0.51 0.87 1.17 -3.12 -0.33 0.71 -1.38 -2.34 -0.8
-3.73 -5.71 -6.02 - -4.28 -4.71 0.09 -4.5 - - -0.44 1.12 1.05 0.56 -0.28 0.47 0.9 0.75 0.83 0.8 0.18 1.13 0.15 0.81 0.45 -0.16 0.19 -0.11 0.01 0.04 0.17 0.46 -0.12
-3.56 -3.83 -4.06 -3.05 -2.55 -1.3 -2.01 -2.57 -2.51 -1.0 1.6 0.14 -0.43 0.06 -0.4 0.54 1.32 1.43 1.2 1.18 1.51 -0.03 -1.09 -1.0 1.0 1.06 1.22 -4.25 -1.84 -1.47 -3.66 -4.19 0.09
-2.21 -1.89 -2.67 -3.42 -2.76 -2.57 -0.65 -2.19 -1.62 -0.23 1.69 0.92 1.0 1.02 -0.15 0.53 1.43 1.31 0.52 0.53 0.76 0.1 -0.81 -3.03 1.36 0.22 0.68 -2.51 -1.81 -1.27 -2.4 -2.48 -1.6
-1.87 -1.71 -2.89 -2.42 -2.67 -2.32 -2.66 -3.13 -3.25 -3.6 1.49 -1.63 1.27 -1.24 0.1 1.21 1.36 1.42 1.32 1.26 1.52 -0.95 -0.62 -1.33 0.61 0.93 1.07 -1.79 -2.17 -1.25 -2.17 -1.92 -1.25
-2.12 -3.92 -1.87 -2.58 -2.35 -2.71 -0.1 -2.98 -3.04 -4.16 0.62 0.34 0.8 0.35 0.3 1.5 0.67 0.6 0.64 0.52 0.57 0.45 0.41 0.14 0.02 0.03 0.29 0.31 0.1 -0.05 0.07 -0.29 0.01
-3.73 -3.7 -3.9 -3.45 -4.43 -3.6 -0.06 -3.34 -4.01 -3.27 1.15 -0.06 0.43 0.02 -0.04 0.73 1.49 0.86 1.05 1.3 1.03 -0.04 -1.11 -0.14 0.62 0.85 0.88 -0.19 -0.45 -0.19 -0.52 -0.79 -0.52
- - -7.2 - -6.72 -6.1 -3.45 -4.8 -8.12 -5.89 1.7 -1.86 1.82 -1.68 0.72 1.61 1.14 0.81 1.11 0.33 1.04 -2.77 1.39 -2.32 1.48 1.0 1.04 -2.55 -3.28 -1.55 -3.14 -3.0 -0.63
-2.12 -2.08 -2.74 -3.06 -2.77 -2.56 -0.75 -2.39 -2.35 -2.48 1.26 0.6 0.75 0.24 -0.02 0.98 1.05 0.47 0.5 0.81 0.18 0.3 0.11 -0.97 1.16 0.88 1.0 -0.66 -0.42 -0.14 -0.7 -0.72 -0.19
-7.25 -7.19 - -7.56 -10.43 - -2.01 - - -5.65 0.85 0.29 1.38 -0.42 1.91 0.76 1.33 1.41 0.63 0.49 1.0 0.34 0.01 -1.44 0.54 0.79 1.12 -1.65 -2.16 -0.69 -1.47 -0.69 -0.61
-3.09 -3.11 -4.13 -3.74 -4.6 -3.95 0.71 -4.14 -4.29 -3.41 1.08 1.18 0.63 0.49 0.16 0.16 1.3 0.04 0.27 -0.04 0.3 0.62 0.77 -0.39 1.14 0.98 1.19 -0.98 -0.54 -0.35 -1.07 -1.0 -0.31
- - - - - -5.82 - - - - 1.8 -0.81 -0.66 -5.61 -1.02 1.97 1.18 1.33 1.83 2.1 1.38 1.11 -0.45 -2.16 0.33 0.98 1.19 - - - - - -6.51
-9.72 - - - - - -3.9 -6.25 -5.65 - 1.49 -1.74 1.74 -1.23 0.49 1.56 1.61 0.98 1.16 0.67 0.8 -2.97 1.68 -1.9 1.22 0.83 0.82 -2.78 -2.69 -1.22 -3.25 -2.99 -0.64
-1.0 -1.34 -1.04 -1.14 -0.89 -0.83 0.32 -1.52 -1.39 -1.0 0.62 0.36 0.1 0.39 -0.45 0.54 0.79 0.47 0.22 0.18 0.38 0.1 0.41 -0.25 0.83 0.24 0.39 -0.15 -0.08 0.16 -0.23 -0.17 0.34
-5.44 -5.33 -5.37 -3.61 -3.23 -5.95 -4.15 -2.62 -0.64 -1.79 1.84 -0.64 0.59 -3.3 0.42 0.64 1.36 2.09 1.33 0.83 1.93 -2.92 -3.62 -3.49 2.35 -0.27 0.37 -5.99 -5.98 -3.37 -4.74 -3.72 -2.59
-3.34 -3.95 -4.0 -4.5 -4.2 -4.19 -4.47 -3.3 -3.03 -2.9 0.93 0.54 -0.02 0.94 0.7 1.57 1.02 1.16 1.05 1.31 1.12 -0.83 -1.64 -1.68 0.77 0.82 0.9 -0.72 -0.86 -0.59 -1.26 -0.59 -0.1
-0.95 -1.56 -1.47 -1.93 -2.04 -1.55 0.11 -1.59 -2.21 -1.56 0.06 0.05 0.92 0.08 -0.35 0.12 0.87 0.63 0.4 0.15 0.24 0.64 0.85 0.72 0.3 0.43 0.67 -0.16 0.01 -0.13 -0.14 0.02 0.23
-5.23 -4.97 -6.95 -5.96 -5.93 -6.29 -1.16 -6.89 - -6.65 0.4 0.58 1.27 1.34 0.2 1.07 1.3 -0.67 0.27 0.59 0.24 1.46 0.51 -0.82 0.64 0.79 0.89 -1.2 -0.06 0.14 -0.36 -0.99 -0.38
-5.11 -5.22 -5.35 -6.73 -5.43 -5.14 0.36 -7.16 - - 0.8 0.76 0.4 0.66 -0.5 0.82 1.21 0.72 0.47 0.46 0.69 0.46 0.48 -0.27 -0.42 0.81 1.19 -0.39 0.42 0.19 -0.19 -0.33 0.19
- - -5.4 -7.97 - - -0.3 -7.03 -4.19 - 0.53 0.9 1.47 1.29 -0.4 0.99 1.17 0.52 -0.13 0.26 0.53 1.06 0.98 0.48 0.38 0.06 0.51 -0.33 -0.49 -0.34 -0.07 -0.95 -0.79
-2.13 -1.51 -3.01 -2.81 -2.49 -0.87 -0.38 -2.46 -1.8 -1.03 0.8 0.8 0.35 0.14 -0.62 0.41 0.9 0.68 0.24 0.73 0.77 0.67 0.79 0.21 0.12 0.46 0.46 -0.24 0.01 -0.02 -0.2 -0.47 0.12
-1.37 -1.16 -1.22 -0.93 -0.77 -0.06 -0.36 -0.73 -0.66 0.0 0.56 0.15 -0.93 0.97 -0.03 0.78 0.58 0.9 0.65 0.56 0.59 -0.39 -1.06 -0.3 -0.96 -0.02 0.02 -0.13 0.01 0.12 -0.06 0.24 0.37
-1.51 -1.46 -1.25 -0.6 -1.05 -0.97 -0.8 -0.83 -1.02 -0.69 0.85 -0.34 -0.45 -0.37 1.27 1.04 0.77 0.86 0.73 1.2 0.74 -0.12 -1.0 -0.59 0.45 0.11 0.37 -0.41 -0.53 -0.41 -0.62 -0.25 -0.42
-3.54 -1.82 -3.46 -4.83 -3.19 -2.3 0.12 -3.25 -2.05 - 0.19 1.38 0.94 0.61 0.28 0.9 0.93 0.31 0.76 1.09 0.45 1.07 0.95 -0.54 0.03 -0.18 0.1 -0.23 -0.74 -0.23 -0.35 -0.39 -0.74
-1.18 -0.98 -1.78 -1.56 -1.56 -1.36 -1.07 -1.88 -1.87 -1.44 1.15 -0.54 0.82 -0.12 1.14 0.87 1.25 0.64 0.59 0.72 0.58 0.59 0.23 -0.53 1.27 0.28 0.47 -1.72 -1.39 -0.83 -1.32 -0.97 -0.86
-3.36 -3.88 -2.91 -2.63 -1.99 -1.87 -1.36 -2.26 -2.06 -1.76 1.02 0.75 0.6 0.84 0.39 0.52 0.89 0.88 0.86 0.93 0.75 0.07 0.15 -0.25 0.71 0.45 0.64 -0.89 -0.48 -0.07 -0.44 -0.41 -0.36
-5.22 -6.81 -7.43 -7.26 -8.62 -11.13 -3.98 -7.07 -6.85 -7.29 0.6 0.69 0.23 0.91 0.98 1.95 0.7 0.87 1.52 1.15 1.21 -0.62 -1.26 -2.05 0.43 0.71 0.62 -0.74 -0.79 -0.27 -1.35 -0.53 0.11
-2.09 -2.13 -1.69 -1.68 -1.84 -1.41 -0.46 0.45 -0.3 -0.18 0.88 0.16 0.38 0.46 -0.04 0.37 1.78 0.64 0.19 0.39 0.55 0.61 0.68 -1.06 0.3 0.54 0.97 -2.44 -0.95 -0.46 -1.41 -1.5 -1.98
-7.25 -7.06 -6.01 -6.97 -8.58 -6.98 -0.41 -4.8 - -5.03 0.73 0.1 1.0 0.85 -0.23 0.75 1.76 0.89 0.83 0.92 0.75 0.86 1.1 -0.6 0.68 0.73 1.02 -2.09 -1.17 -0.41 -1.44 -1.4 -1.43
-3.47 -3.58 -3.41 -3.09 -3.09 -3.34 -2.58 -2.96 -2.71 -2.72 1.04 0.04 0.51 -0.15 0.56 1.14 1.23 1.2 1.16 1.2 1.21 0.08 -0.21 -1.2 0.19 0.81 0.95 -0.49 -0.6 -0.54 -0.69 -0.64 -0.5
-4.06 -4.26 -5.01 -5.1 -5.23 -4.1 0.01 -5.5 -7.17 -5.62 1.1 0.43 0.69 0.03 0.1 1.03 1.11 1.13 1.05 0.73 0.79 0.63 0.9 -1.02 1.24 0.44 0.62 -1.03 -0.72 -0.53 -1.2 -1.13 -0.32

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.