Heatmap: Cluster_206 (HCCA cluster)

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Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
667.45 680.67 504.39 461.91 490.05 697.36 287.14 584.6 511.49 478.49 211.41 268.23 273.89 237.47 325.47 208.28 145.73 202.94 158.88 158.55 148.71 312.0 219.5 200.36 295.21 231.05 238.25 191.49 234.44 247.63 209.7 190.46 190.18
138.37 163.97 109.48 127.61 132.47 202.75 28.17 202.23 218.26 136.72 77.84 28.65 22.05 22.1 49.81 48.74 20.96 72.06 83.07 56.64 59.24 21.53 18.49 12.95 40.8 51.1 51.65 54.36 62.11 67.77 53.35 49.63 66.14
124.6 165.33 145.95 168.95 105.89 134.44 23.26 114.67 103.06 135.99 18.36 19.48 19.13 12.55 33.57 15.12 8.31 21.01 17.69 17.75 24.75 16.15 15.91 14.64 24.09 25.96 25.8 25.43 29.31 22.23 22.24 18.43 24.84
4.12 3.68 5.4 4.42 3.24 2.16 0.35 3.82 5.5 2.96 1.03 0.95 0.35 1.7 0.19 3.0 2.04 1.01 1.15 0.9 0.71 0.48 0.57 0.08 0.98 0.55 0.43 0.0 0.24 0.86 0.0 0.05 0.49
51.82 74.38 41.84 39.92 37.76 37.98 46.22 37.46 54.16 42.33 12.8 23.06 17.1 12.74 15.59 13.99 22.13 15.56 13.27 16.02 18.78 30.0 25.56 23.17 14.52 17.89 18.57 27.68 34.02 35.16 25.24 23.77 33.42
45.47 60.37 30.28 33.16 40.56 61.16 11.13 60.8 50.89 38.04 1.73 3.44 0.6 0.96 1.63 0.86 1.24 1.16 1.08 1.24 1.4 1.29 0.68 1.07 2.09 8.34 8.56 6.12 7.54 7.79 6.06 6.48 7.72
23.58 22.17 22.07 14.99 18.36 14.3 8.92 15.62 14.59 7.93 4.08 4.66 5.55 4.44 3.56 4.24 5.7 3.74 2.77 2.72 3.01 6.31 10.23 5.8 6.96 9.03 8.95 8.46 12.79 9.2 6.24 6.43 8.66
150.29 154.72 177.13 180.11 202.19 239.02 49.21 203.52 183.78 189.32 42.55 47.86 39.7 37.07 53.1 41.97 41.49 29.68 31.36 34.15 35.24 48.2 61.38 37.85 49.71 74.58 74.54 54.68 62.14 67.17 54.41 52.87 70.6
747.06 895.68 702.66 666.43 518.09 371.41 203.5 666.58 689.98 599.6 89.25 142.38 91.56 146.04 109.11 73.83 80.78 107.72 86.06 105.64 96.94 132.21 166.98 93.94 133.97 183.0 169.67 246.2 251.83 241.94 239.41 226.6 239.88
48.14 59.51 39.49 40.11 45.0 27.97 10.13 43.28 31.01 42.66 10.8 8.9 5.11 7.82 8.07 9.95 13.13 13.59 10.1 10.13 11.04 7.26 5.93 2.84 7.7 10.69 9.96 3.06 4.15 5.32 3.59 3.43 5.11
1005.23 1064.08 1212.49 1468.92 1493.81 1892.82 194.79 1787.94 1558.66 2026.84 126.03 157.99 72.86 118.54 159.26 96.5 98.52 102.52 91.44 105.68 101.0 158.08 118.52 45.08 176.18 206.64 246.29 71.56 95.14 130.87 98.13 107.21 104.48
227.4 193.24 323.06 327.47 321.02 157.49 196.28 225.89 248.73 226.73 118.09 167.37 197.57 146.14 156.11 165.88 96.73 113.0 124.19 121.01 120.2 164.19 211.41 220.87 154.08 115.69 101.14 129.78 151.28 123.08 130.91 134.39 119.48
288.77 397.23 244.59 272.58 215.22 103.2 122.93 292.92 240.3 174.82 23.46 66.75 57.4 61.55 46.45 26.58 87.11 27.48 27.25 28.49 29.62 116.26 77.2 42.54 85.27 32.77 35.68 32.83 39.97 44.4 29.21 38.86 52.07
18.96 15.06 31.02 36.54 29.51 25.38 15.07 20.28 19.4 19.08 7.58 5.92 10.58 9.6 22.73 25.61 7.3 25.51 18.61 21.52 17.82 9.03 6.99 24.98 15.58 6.2 4.89 21.41 16.57 15.11 17.91 17.29 16.11
1793.58 2159.75 2302.95 2781.55 2315.07 1147.94 966.63 1447.61 1392.82 939.63 199.82 403.35 417.31 217.02 236.73 190.18 299.16 174.45 198.59 216.78 219.73 426.38 420.06 176.54 676.77 249.67 268.39 161.9 251.04 312.34 158.33 166.73 309.98
113.58 172.8 97.0 99.62 87.88 90.79 20.51 48.44 52.82 46.64 7.37 11.79 10.89 3.55 4.57 5.17 8.48 7.65 7.71 5.77 7.37 11.72 9.96 9.66 9.65 12.02 11.91 18.31 26.35 23.93 21.79 14.79 18.62
331.12 406.96 274.93 283.35 247.16 240.85 99.48 336.21 352.78 302.18 74.46 77.13 70.28 83.39 149.63 92.03 90.43 81.75 62.45 57.34 69.64 80.78 67.85 57.28 105.5 112.61 107.73 118.93 131.18 114.96 110.72 99.41 91.03
242.87 201.46 252.78 223.01 204.45 197.43 82.3 254.71 248.83 223.48 39.71 53.0 42.0 58.62 52.67 35.02 19.09 37.63 28.1 29.57 33.09 49.76 64.06 56.35 46.34 49.58 42.53 74.9 85.07 77.89 75.67 61.97 72.98
266.35 222.72 246.73 196.81 194.15 158.67 80.36 237.81 192.81 157.69 43.67 51.04 36.09 56.82 69.01 36.53 36.63 36.67 32.37 29.52 33.31 55.1 59.08 34.53 51.53 53.88 56.4 55.2 67.98 62.35 53.05 48.09 63.87
37.01 30.36 39.75 33.25 24.37 23.0 23.93 33.18 30.79 19.77 12.88 17.4 13.42 15.24 20.93 14.01 12.2 7.98 11.84 8.76 10.13 14.94 35.46 11.11 17.72 13.7 14.38 14.69 15.0 15.92 15.93 14.02 10.77
128.31 143.88 101.12 84.01 104.19 125.76 57.62 163.53 154.53 98.88 48.25 48.39 41.81 51.09 44.65 38.74 25.51 52.28 35.26 45.9 38.53 59.27 63.87 69.78 54.14 45.51 45.53 34.69 41.2 45.77 31.98 22.0 43.36
885.14 1293.11 689.73 786.35 656.83 574.43 306.31 1297.91 996.94 906.11 122.52 321.82 295.59 244.07 176.83 141.13 313.07 117.49 112.42 130.04 123.18 353.57 364.72 189.47 331.68 329.2 344.33 269.68 410.09 427.73 292.38 239.75 392.65
8.77 11.01 5.2 7.8 7.55 10.09 1.14 14.0 13.34 9.14 0.67 0.38 0.08 0.86 0.6 0.36 1.74 0.4 0.92 0.7 0.83 0.71 1.41 0.04 0.54 2.82 3.34 3.43 4.48 4.35 2.7 2.96 3.67
1754.35 2394.57 1950.17 2066.01 1289.46 1119.62 460.89 1949.96 1631.31 1986.44 174.94 314.16 369.56 215.68 244.32 152.34 166.14 189.85 192.55 240.08 243.19 448.56 493.8 313.34 475.87 218.25 206.61 356.96 336.95 325.77 330.08 296.61 288.07
74.27 65.28 121.46 88.8 77.96 25.96 0.2 94.9 64.69 77.45 0.0 0.26 0.0 0.7 0.0 0.0 0.07 0.0 0.0 0.0 0.0 0.06 0.0 0.0 0.0 2.59 1.7 0.0 0.31 0.14 0.06 0.0 0.28
979.83 814.51 719.0 543.03 675.37 636.16 465.94 834.6 728.01 571.29 276.44 363.34 251.63 294.1 276.69 288.67 194.11 267.29 218.3 229.23 208.25 315.59 258.97 184.63 320.8 423.71 408.79 303.61 353.57 272.75 270.01 254.39 258.59
0.52 1.01 0.9 0.66 0.45 0.26 0.09 0.88 0.64 0.21 0.15 0.0 0.0 0.0 0.0 0.0 0.04 0.63 0.0 0.27 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.05 0.09 0.0 0.13 0.05 0.0
446.44 467.77 449.39 399.14 406.15 461.24 109.31 486.51 434.55 341.56 119.73 84.44 54.18 84.13 113.17 76.44 88.87 121.96 104.9 103.35 116.87 99.11 102.17 47.29 112.86 143.41 135.68 156.8 187.27 182.89 175.26 163.3 156.12
81.35 95.25 91.72 77.43 91.62 104.64 32.39 77.89 66.51 70.01 48.08 39.03 60.81 36.95 38.69 32.33 31.13 36.04 42.69 40.4 46.63 46.32 31.58 21.64 48.75 25.6 23.84 37.22 38.02 30.77 34.53 27.72 36.83
169.81 212.93 123.66 110.35 119.93 169.33 56.59 191.19 145.96 124.25 20.02 45.98 17.59 24.21 25.54 13.81 16.75 10.51 14.26 13.97 12.54 38.58 64.81 11.13 33.39 28.3 32.02 26.55 37.29 38.52 26.93 25.06 32.72
440.75 433.79 448.44 409.06 394.81 281.6 70.2 526.46 398.62 352.19 15.96 32.56 16.9 33.24 21.79 13.54 29.39 13.61 13.49 13.68 17.82 33.95 28.98 13.15 31.72 56.98 51.17 57.81 63.27 52.6 47.79 44.92 55.5
920.52 994.71 1144.65 1162.58 934.82 753.21 455.68 785.77 607.95 352.99 60.51 191.72 278.14 138.8 52.05 53.11 146.32 50.23 46.82 47.02 47.34 260.58 389.56 127.56 392.37 190.71 175.91 106.76 119.78 126.88 97.61 90.37 143.94
455.5 339.27 561.42 441.9 394.12 222.8 163.97 280.84 313.04 193.12 57.29 113.54 102.47 120.46 77.06 57.96 92.63 68.07 70.69 59.6 57.33 143.1 127.95 85.36 148.37 107.52 107.51 104.39 132.11 141.29 103.1 102.23 120.82
45.05 65.63 37.95 47.52 37.79 26.74 55.12 13.84 17.76 15.42 1.95 21.89 2.62 25.6 0.91 0.0 5.49 0.23 0.21 0.2 0.0 26.33 7.87 2.32 8.54 7.83 7.62 5.46 27.13 26.31 8.52 4.45 32.62
134.07 120.83 173.78 131.41 146.78 95.62 47.54 87.67 108.49 75.75 17.3 45.95 38.54 18.17 10.98 11.37 43.7 12.02 15.13 14.22 14.46 42.11 66.88 13.47 42.43 42.4 44.5 35.93 39.2 44.63 34.78 28.82 44.45
163.65 134.99 143.51 123.32 122.63 118.13 55.88 163.44 143.7 124.75 26.42 31.89 42.14 34.63 32.2 44.06 26.63 25.41 24.27 27.77 25.78 50.95 66.62 44.01 41.91 56.01 51.1 41.99 41.62 41.44 45.67 40.48 34.27
117.09 107.68 79.93 65.99 70.53 102.85 45.19 99.55 92.65 67.2 23.2 27.33 11.83 21.31 44.36 16.27 8.86 23.54 17.55 13.21 19.84 17.92 23.23 16.35 16.02 15.49 16.22 25.43 40.04 38.71 25.19 19.26 30.6
49.25 61.12 49.85 43.11 31.9 29.63 18.71 46.38 33.25 41.56 10.18 14.99 4.96 15.98 12.09 13.61 4.99 15.56 9.89 9.17 17.75 16.28 1.65 3.16 15.31 7.13 7.38 7.06 7.25 7.3 5.99 6.12 5.71
107.0 105.52 122.38 105.75 93.97 113.68 44.22 114.48 103.0 93.88 26.23 35.64 31.58 38.66 27.42 20.49 22.81 22.48 18.54 19.07 23.67 42.62 43.06 26.37 41.22 36.69 34.65 37.46 45.48 54.08 43.52 39.17 46.65
547.7 453.11 557.33 450.15 447.5 394.38 277.95 581.78 434.01 393.66 125.31 298.69 149.12 135.77 327.15 192.26 124.41 161.99 137.34 152.93 153.74 303.37 226.02 183.43 302.96 183.0 166.76 181.59 194.8 217.86 222.32 229.92 215.37
309.71 246.83 370.54 288.41 333.9 276.02 216.37 271.21 235.59 184.21 137.02 192.36 194.54 189.55 194.18 99.59 89.52 117.06 100.88 120.51 114.8 263.81 229.32 185.48 231.3 98.12 89.67 156.79 168.75 165.83 155.91 154.73 151.5
141.21 139.43 97.74 81.84 93.45 105.16 27.36 157.47 156.5 127.88 13.39 21.17 7.23 18.24 13.19 10.38 18.32 19.55 15.2 14.22 14.12 19.82 26.38 8.03 9.57 48.87 43.63 41.16 58.71 57.67 41.68 36.35 60.57
1027.11 1118.83 783.05 637.02 608.38 715.6 500.73 827.82 793.08 697.23 166.51 279.4 194.55 347.35 253.48 223.1 211.77 213.29 172.93 213.12 182.14 319.25 307.01 177.65 254.9 187.37 185.73 236.59 303.96 269.13 233.48 198.59 216.54
405.96 408.54 536.41 481.23 505.01 519.74 140.66 591.97 529.76 526.62 109.09 102.48 82.06 81.08 113.08 98.42 62.09 113.07 102.48 95.01 96.45 106.82 94.61 67.56 135.62 136.53 133.56 82.22 90.78 98.66 92.73 92.79 94.56
15.85 23.17 13.19 18.68 20.89 25.82 2.5 29.2 24.51 23.95 2.7 3.1 4.77 7.51 3.29 4.13 2.28 2.12 0.92 3.95 3.74 3.93 3.44 4.73 3.52 6.09 5.31 9.03 13.01 16.3 12.7 10.75 12.55
749.55 657.6 933.7 774.06 653.26 433.77 214.18 558.22 548.42 435.37 128.86 130.15 162.88 143.98 173.82 93.07 185.76 142.52 130.32 136.8 123.34 188.82 279.86 131.08 242.01 259.29 225.69 282.38 275.6 260.7 291.51 271.31 224.46
130.89 112.28 133.06 101.16 95.13 88.72 21.91 116.35 101.67 79.16 11.82 10.77 9.45 13.58 10.72 6.88 21.38 10.05 13.72 11.41 10.65 12.95 12.96 15.14 16.98 20.26 23.23 11.94 15.23 14.91 13.26 10.06 10.98
410.4 308.01 544.06 420.03 477.44 287.84 401.7 415.0 404.2 210.55 202.22 284.08 250.35 358.58 194.82 210.8 108.22 189.04 179.02 181.29 166.23 359.39 425.68 248.9 350.53 195.72 170.36 241.21 258.15 240.45 238.04 227.91 235.52
130.77 163.98 153.92 145.73 122.91 148.37 58.0 131.67 125.53 111.18 53.45 37.22 43.38 49.24 55.72 31.81 15.05 48.69 46.33 36.33 40.16 48.07 61.55 29.11 56.87 24.17 22.95 30.32 32.45 27.47 29.83 24.88 22.86
64.87 70.74 68.41 60.26 63.55 71.72 43.38 71.77 58.79 45.05 17.54 21.01 19.48 25.24 18.77 18.79 20.73 27.73 14.31 17.88 13.39 30.69 22.61 18.02 19.22 22.69 24.9 29.56 37.1 36.84 27.14 24.71 35.37
84.81 71.44 132.34 94.97 95.85 41.1 0.13 128.11 106.91 105.33 0.0 0.69 0.0 0.55 0.0 0.0 0.49 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.93 3.64 1.22 1.04 1.46 0.7 0.79 0.99
56.87 53.15 71.59 52.39 47.79 39.28 3.24 42.2 36.36 25.17 3.15 1.48 1.98 2.59 3.48 3.56 5.65 6.42 3.62 4.2 4.87 2.75 0.64 1.33 3.47 6.05 7.0 4.99 8.42 8.62 4.02 5.91 6.68
26.89 34.91 33.13 21.92 26.66 14.53 10.28 15.91 10.72 7.03 0.06 8.21 2.16 8.78 9.97 0.86 1.39 1.92 1.41 0.47 0.0 12.43 3.83 2.19 19.34 6.21 8.37 1.23 0.06 0.12 0.75 0.22 0.58
1664.45 2177.08 3013.48 3514.31 1532.21 1584.04 961.93 1134.17 1332.48 2033.64 1194.05 725.2 713.5 480.86 892.76 1134.52 564.06 932.85 674.28 680.14 729.0 743.61 439.76 220.55 940.26 239.81 231.66 16.25 83.61 138.26 22.12 25.05 136.54

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)