Heatmap: Cluster_206 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
1.07 1.1 0.67 0.54 0.63 1.14 -0.14 0.88 0.69 0.59 -0.58 -0.24 -0.21 -0.42 0.04 -0.61 -1.12 -0.64 -1.0 -1.0 -1.09 -0.02 -0.53 -0.66 -0.1 -0.46 -0.41 -0.73 -0.44 -0.36 -0.6 -0.74 -0.74
0.84 1.08 0.5 0.72 0.78 1.39 -1.46 1.39 1.5 0.82 0.01 -1.43 -1.81 -1.81 -0.63 -0.67 -1.88 -0.1 0.1 -0.45 -0.38 -1.84 -2.06 -2.58 -0.92 -0.6 -0.58 -0.51 -0.32 -0.19 -0.54 -0.64 -0.22
1.28 1.69 1.51 1.72 1.04 1.39 -1.14 1.16 1.0 1.4 -1.48 -1.4 -1.42 -2.03 -0.61 -1.76 -2.63 -1.29 -1.54 -1.53 -1.05 -1.67 -1.69 -1.81 -1.09 -0.98 -0.99 -1.01 -0.81 -1.21 -1.21 -1.48 -1.05
1.35 1.18 1.74 1.45 1.0 0.41 -2.2 1.24 1.76 0.87 -0.65 -0.76 -2.21 0.07 -3.07 0.89 0.34 -0.68 -0.49 -0.85 -1.19 -1.76 -1.5 -4.33 -0.72 -1.56 -1.9 - -2.74 -0.92 - -4.9 -1.73
0.84 1.36 0.53 0.47 0.39 0.39 0.68 0.37 0.91 0.55 -1.18 -0.33 -0.76 -1.18 -0.89 -1.05 -0.39 -0.89 -1.12 -0.85 -0.62 0.05 -0.18 -0.32 -0.99 -0.69 -0.64 -0.06 0.24 0.28 -0.2 -0.28 0.21
1.55 1.96 0.97 1.1 1.39 1.98 -0.48 1.97 1.72 1.3 -3.16 -2.17 -4.68 -4.01 -3.24 -4.17 -3.65 -3.74 -3.84 -3.65 -3.47 -3.58 -4.5 -3.86 -2.89 -0.89 -0.85 -1.34 -1.04 -0.99 -1.35 -1.26 -1.0
1.35 1.26 1.25 0.69 0.98 0.63 -0.06 0.75 0.65 -0.23 -1.18 -0.99 -0.74 -1.06 -1.38 -1.13 -0.7 -1.31 -1.74 -1.77 -1.62 -0.56 0.14 -0.68 -0.41 -0.04 -0.05 -0.13 0.46 -0.01 -0.57 -0.53 -0.1
0.79 0.83 1.03 1.05 1.22 1.46 -0.82 1.23 1.08 1.12 -1.03 -0.86 -1.13 -1.23 -0.71 -1.05 -1.07 -1.55 -1.47 -1.35 -1.3 -0.85 -0.5 -1.2 -0.81 -0.22 -0.22 -0.67 -0.49 -0.37 -0.68 -0.72 -0.3
1.37 1.64 1.28 1.21 0.85 0.37 -0.5 1.21 1.26 1.06 -1.69 -1.02 -1.66 -0.98 -1.4 -1.97 -1.84 -1.42 -1.74 -1.45 -1.57 -1.12 -0.79 -1.62 -1.11 -0.66 -0.77 -0.23 -0.2 -0.25 -0.27 -0.35 -0.27
1.49 1.8 1.21 1.23 1.39 0.71 -0.76 1.34 0.86 1.32 -0.67 -0.94 -1.74 -1.13 -1.08 -0.78 -0.38 -0.33 -0.76 -0.76 -0.63 -1.24 -1.53 -2.59 -1.15 -0.68 -0.78 -2.48 -2.04 -1.69 -2.25 -2.32 -1.74
1.01 1.09 1.28 1.56 1.58 1.92 -1.36 1.84 1.64 2.02 -1.99 -1.66 -2.78 -2.08 -1.65 -2.37 -2.34 -2.29 -2.45 -2.24 -2.31 -1.66 -2.08 -3.47 -1.5 -1.27 -1.02 -2.8 -2.39 -1.93 -2.35 -2.22 -2.26
0.39 0.15 0.9 0.92 0.89 -0.14 0.18 0.38 0.52 0.38 -0.56 -0.05 0.19 -0.25 -0.15 -0.07 -0.84 -0.62 -0.48 -0.52 -0.53 -0.08 0.28 0.35 -0.17 -0.59 -0.78 -0.42 -0.2 -0.5 -0.41 -0.37 -0.54
1.46 1.92 1.22 1.38 1.04 -0.02 0.23 1.48 1.2 0.74 -2.16 -0.65 -0.87 -0.77 -1.18 -1.98 -0.27 -1.93 -1.94 -1.88 -1.82 0.15 -0.44 -1.3 -0.3 -1.68 -1.56 -1.68 -1.39 -1.24 -1.84 -1.43 -1.01
0.12 -0.21 0.83 1.07 0.76 0.54 -0.21 0.22 0.15 0.13 -1.2 -1.56 -0.72 -0.86 0.38 0.56 -1.26 0.55 0.09 0.3 0.03 -0.95 -1.32 0.52 -0.16 -1.49 -1.83 0.3 -0.07 -0.21 0.04 -0.01 -0.11
1.33 1.59 1.69 1.96 1.69 0.68 0.43 1.02 0.96 0.39 -1.84 -0.83 -0.78 -1.72 -1.59 -1.91 -1.26 -2.04 -1.85 -1.72 -1.7 -0.75 -0.77 -2.02 -0.08 -1.52 -1.41 -2.14 -1.51 -1.2 -2.18 -2.1 -1.21
1.77 2.38 1.54 1.58 1.4 1.45 -0.7 0.54 0.67 0.49 -2.18 -1.5 -1.61 -3.23 -2.87 -2.69 -1.97 -2.12 -2.11 -2.53 -2.18 -1.51 -1.74 -1.79 -1.79 -1.47 -1.48 -0.86 -0.34 -0.48 -0.61 -1.17 -0.84
1.13 1.43 0.86 0.91 0.71 0.67 -0.6 1.16 1.22 1.0 -1.02 -0.97 -1.1 -0.86 -0.01 -0.71 -0.74 -0.88 -1.27 -1.4 -1.12 -0.9 -1.15 -1.4 -0.52 -0.42 -0.49 -0.34 -0.2 -0.39 -0.45 -0.6 -0.73
1.27 1.0 1.33 1.15 1.02 0.97 -0.29 1.34 1.31 1.15 -1.34 -0.92 -1.26 -0.78 -0.93 -1.52 -2.4 -1.42 -1.84 -1.77 -1.6 -1.01 -0.65 -0.83 -1.12 -1.02 -1.24 -0.42 -0.24 -0.37 -0.41 -0.7 -0.46
1.51 1.26 1.4 1.08 1.06 0.77 -0.21 1.35 1.05 0.76 -1.09 -0.87 -1.37 -0.71 -0.43 -1.35 -1.35 -1.35 -1.53 -1.66 -1.48 -0.76 -0.66 -1.43 -0.86 -0.79 -0.73 -0.76 -0.46 -0.58 -0.81 -0.96 -0.55
0.95 0.66 1.05 0.79 0.34 0.26 0.32 0.79 0.68 0.04 -0.58 -0.14 -0.52 -0.33 0.12 -0.46 -0.66 -1.27 -0.7 -1.13 -0.92 -0.36 0.88 -0.79 -0.12 -0.49 -0.42 -0.39 -0.36 -0.27 -0.27 -0.45 -0.83
0.95 1.12 0.61 0.34 0.65 0.92 -0.2 1.3 1.22 0.58 -0.46 -0.46 -0.67 -0.38 -0.57 -0.78 -1.38 -0.34 -0.91 -0.53 -0.78 -0.16 -0.05 0.07 -0.29 -0.54 -0.54 -0.94 -0.69 -0.54 -1.05 -1.59 -0.61
1.02 1.56 0.66 0.85 0.59 0.39 -0.51 1.57 1.19 1.05 -1.84 -0.44 -0.57 -0.84 -1.31 -1.63 -0.48 -1.9 -1.96 -1.75 -1.83 -0.31 -0.26 -1.21 -0.4 -0.41 -0.35 -0.7 -0.09 -0.03 -0.58 -0.87 -0.16
1.2 1.53 0.45 1.03 0.98 1.4 -1.75 1.87 1.8 1.26 -2.5 -3.32 -5.57 -2.14 -2.67 -3.4 -1.14 -3.24 -2.06 -2.46 -2.21 -2.42 -1.44 -6.57 -2.82 -0.44 -0.19 -0.16 0.23 0.19 -0.5 -0.37 -0.06
1.32 1.77 1.47 1.56 0.88 0.67 -0.61 1.47 1.21 1.5 -2.01 -1.16 -0.93 -1.7 -1.52 -2.21 -2.08 -1.89 -1.87 -1.55 -1.53 -0.65 -0.51 -1.17 -0.56 -1.69 -1.77 -0.98 -1.06 -1.11 -1.09 -1.24 -1.29
1.81 1.63 2.52 2.07 1.88 0.3 -6.75 2.17 1.61 1.87 - -6.33 - -4.92 - - -8.25 - - - - -8.56 - - - -3.03 -3.64 - -6.07 -7.28 -8.55 - -6.23
1.26 1.0 0.82 0.41 0.73 0.64 0.19 1.03 0.84 0.49 -0.56 -0.17 -0.7 -0.47 -0.56 -0.5 -1.07 -0.61 -0.9 -0.83 -0.97 -0.37 -0.66 -1.14 -0.35 0.05 0.0 -0.43 -0.21 -0.58 -0.6 -0.68 -0.66
1.28 2.25 2.08 1.63 1.06 0.28 -1.21 2.04 1.58 -0.0 -0.53 - - - - - -2.47 1.56 - 0.34 - - - - - - -3.55 -2.08 -1.28 - -0.74 -1.98 -
1.13 1.2 1.14 0.97 0.99 1.18 -0.9 1.25 1.09 0.74 -0.77 -1.27 -1.91 -1.28 -0.85 -1.42 -1.2 -0.74 -0.96 -0.98 -0.8 -1.04 -1.0 -2.11 -0.85 -0.51 -0.59 -0.38 -0.12 -0.16 -0.22 -0.32 -0.39
0.71 0.93 0.88 0.64 0.88 1.07 -0.62 0.64 0.42 0.49 -0.05 -0.35 0.29 -0.43 -0.37 -0.62 -0.68 -0.47 -0.22 -0.3 -0.1 -0.11 -0.66 -1.2 -0.03 -0.96 -1.06 -0.42 -0.39 -0.7 -0.53 -0.85 -0.44
1.46 1.79 1.0 0.84 0.96 1.46 -0.12 1.63 1.24 1.01 -1.62 -0.42 -1.81 -1.35 -1.27 -2.16 -1.88 -2.55 -2.11 -2.14 -2.3 -0.68 0.07 -2.47 -0.88 -1.12 -0.95 -1.22 -0.73 -0.68 -1.2 -1.3 -0.91
1.69 1.66 1.71 1.58 1.53 1.04 -0.96 1.94 1.54 1.36 -3.1 -2.07 -3.02 -2.04 -2.65 -3.34 -2.22 -3.33 -3.34 -3.32 -2.94 -2.01 -2.24 -3.38 -2.11 -1.26 -1.42 -1.24 -1.11 -1.38 -1.52 -1.61 -1.3
1.41 1.52 1.72 1.74 1.43 1.12 0.39 1.18 0.81 0.03 -2.52 -0.86 -0.32 -1.32 -2.74 -2.71 -1.25 -2.79 -2.89 -2.88 -2.87 -0.41 0.17 -1.44 0.18 -0.86 -0.98 -1.7 -1.53 -1.45 -1.83 -1.94 -1.27
1.41 0.98 1.71 1.36 1.2 0.38 -0.07 0.71 0.87 0.17 -1.58 -0.6 -0.74 -0.51 -1.16 -1.57 -0.89 -1.34 -1.28 -1.53 -1.58 -0.26 -0.42 -1.01 -0.21 -0.68 -0.68 -0.72 -0.38 -0.28 -0.74 -0.75 -0.51
1.34 1.88 1.09 1.42 1.09 0.59 1.63 -0.36 -0.0 -0.21 -3.19 0.3 -2.76 0.53 -4.28 - -1.7 -6.29 -6.39 -6.46 - 0.57 -1.18 -2.94 -1.06 -1.18 -1.22 -1.7 0.61 0.57 -1.06 -2.0 0.87
1.26 1.11 1.64 1.23 1.39 0.78 -0.23 0.65 0.96 0.44 -1.69 -0.28 -0.54 -1.62 -2.35 -2.3 -0.35 -2.22 -1.88 -1.97 -1.95 -0.41 0.26 -2.05 -0.4 -0.4 -0.33 -0.64 -0.51 -0.32 -0.68 -0.95 -0.33
1.3 1.02 1.11 0.89 0.88 0.83 -0.25 1.3 1.11 0.91 -1.33 -1.06 -0.66 -0.94 -1.04 -0.59 -1.32 -1.39 -1.45 -1.26 -1.36 -0.38 0.0 -0.59 -0.66 -0.25 -0.38 -0.66 -0.67 -0.68 -0.54 -0.71 -0.95
1.51 1.39 0.96 0.68 0.77 1.32 0.13 1.27 1.17 0.7 -0.83 -0.59 -1.8 -0.95 0.11 -1.34 -2.22 -0.81 -1.23 -1.64 -1.06 -1.2 -0.83 -1.33 -1.36 -1.41 -1.35 -0.7 -0.04 -0.09 -0.71 -1.1 -0.43
1.38 1.69 1.4 1.19 0.75 0.65 -0.02 1.29 0.81 1.14 -0.89 -0.34 -1.93 -0.24 -0.65 -0.48 -1.92 -0.28 -0.94 -1.05 -0.09 -0.22 -3.52 -2.58 -0.31 -1.41 -1.36 -1.42 -1.38 -1.37 -1.66 -1.63 -1.73
0.99 0.97 1.18 0.97 0.8 1.07 -0.29 1.08 0.93 0.8 -1.04 -0.6 -0.77 -0.48 -0.98 -1.4 -1.24 -1.26 -1.54 -1.5 -1.19 -0.34 -0.33 -1.03 -0.39 -0.56 -0.64 -0.53 -0.25 0.0 -0.31 -0.46 -0.21
0.99 0.71 1.01 0.7 0.69 0.51 0.01 1.07 0.65 0.51 -1.14 0.11 -0.89 -1.03 0.24 -0.52 -1.15 -0.77 -1.01 -0.85 -0.85 0.13 -0.29 -0.59 0.13 -0.6 -0.73 -0.61 -0.51 -0.34 -0.31 -0.27 -0.36
0.69 0.36 0.95 0.59 0.8 0.52 0.17 0.5 0.3 -0.06 -0.49 0.0 0.02 -0.02 0.02 -0.95 -1.1 -0.71 -0.93 -0.67 -0.74 0.46 0.26 -0.05 0.27 -0.97 -1.1 -0.29 -0.19 -0.21 -0.3 -0.31 -0.34
1.42 1.4 0.89 0.63 0.82 0.99 -0.95 1.57 1.57 1.27 -1.98 -1.32 -2.87 -1.54 -2.0 -2.35 -1.53 -1.44 -1.8 -1.9 -1.91 -1.42 -1.0 -2.72 -2.47 -0.11 -0.28 -0.36 0.15 0.12 -0.34 -0.54 0.2
1.38 1.5 0.98 0.69 0.62 0.85 0.34 1.07 1.0 0.82 -1.25 -0.5 -1.02 -0.19 -0.64 -0.83 -0.9 -0.89 -1.19 -0.89 -1.12 -0.31 -0.37 -1.16 -0.63 -1.08 -1.09 -0.74 -0.38 -0.56 -0.76 -0.99 -0.87
0.95 0.96 1.35 1.2 1.27 1.31 -0.58 1.5 1.34 1.33 -0.94 -1.03 -1.36 -1.37 -0.89 -1.09 -1.76 -0.89 -1.03 -1.14 -1.12 -0.97 -1.15 -1.64 -0.63 -0.62 -0.65 -1.35 -1.21 -1.09 -1.18 -1.18 -1.15
0.63 1.18 0.37 0.87 1.03 1.34 -2.03 1.51 1.26 1.23 -1.92 -1.72 -1.1 -0.45 -1.64 -1.31 -2.17 -2.27 -3.48 -1.37 -1.45 -1.38 -1.57 -1.11 -1.54 -0.75 -0.95 -0.18 0.35 0.67 0.31 0.07 0.29
1.24 1.06 1.56 1.29 1.05 0.46 -0.56 0.82 0.79 0.46 -1.3 -1.28 -0.96 -1.14 -0.86 -1.77 -0.77 -1.15 -1.28 -1.21 -1.36 -0.74 -0.18 -1.27 -0.39 -0.29 -0.49 -0.16 -0.2 -0.28 -0.12 -0.22 -0.5
1.74 1.52 1.77 1.37 1.28 1.18 -0.83 1.58 1.38 1.02 -1.72 -1.86 -2.05 -1.52 -1.87 -2.5 -0.87 -1.96 -1.51 -1.77 -1.87 -1.59 -1.59 -1.37 -1.2 -0.95 -0.75 -1.71 -1.36 -1.39 -1.56 -1.96 -1.83
0.53 0.11 0.93 0.56 0.75 0.02 0.5 0.54 0.51 -0.44 -0.49 -0.0 -0.19 0.33 -0.55 -0.43 -1.4 -0.59 -0.67 -0.65 -0.78 0.34 0.58 -0.19 0.3 -0.54 -0.74 -0.24 -0.14 -0.24 -0.26 -0.32 -0.27
1.0 1.32 1.23 1.15 0.91 1.18 -0.17 1.01 0.94 0.76 -0.29 -0.81 -0.59 -0.41 -0.23 -1.04 -2.12 -0.43 -0.5 -0.85 -0.7 -0.45 -0.09 -1.17 -0.2 -1.44 -1.51 -1.11 -1.01 -1.25 -1.13 -1.4 -1.52
0.88 1.01 0.96 0.77 0.85 1.03 0.3 1.03 0.74 0.36 -1.01 -0.75 -0.85 -0.48 -0.91 -0.91 -0.76 -0.34 -1.3 -0.98 -1.4 -0.2 -0.64 -0.97 -0.87 -0.63 -0.5 -0.25 0.08 0.06 -0.38 -0.51 0.01
1.67 1.43 2.32 1.84 1.85 0.63 -7.67 2.27 2.01 1.99 - -5.26 - -5.59 - - -5.75 - - - - - - - - -2.76 -2.87 -4.44 -4.68 -4.19 -5.24 -5.07 -4.74
1.83 1.73 2.16 1.71 1.58 1.29 -2.31 1.4 1.18 0.65 -2.35 -3.44 -3.02 -2.63 -2.2 -2.17 -1.5 -1.32 -2.15 -1.93 -1.72 -2.54 -4.65 -3.59 -2.21 -1.41 -1.19 -1.68 -0.93 -0.89 -2.0 -1.44 -1.26
1.6 1.98 1.9 1.31 1.59 0.71 0.21 0.84 0.27 -0.33 -7.31 -0.11 -2.04 -0.01 0.17 -3.37 -2.68 -2.21 -2.65 -4.23 - 0.49 -1.21 -2.01 1.13 -0.51 -0.08 -2.85 -7.23 -6.17 -3.57 -5.3 -3.94
0.83 1.22 1.69 1.91 0.71 0.76 0.04 0.28 0.51 1.12 0.35 -0.37 -0.39 -0.96 -0.07 0.28 -0.73 -0.01 -0.47 -0.46 -0.36 -0.33 -1.09 -2.09 0.01 -1.97 -2.02 -5.85 -3.49 -2.76 -5.4 -5.22 -2.78

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.