Heatmap: Cluster_291 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - -5.01 - -5.33 -5.81 - - -1.38 -4.88 1.13 -6.8 -5.89 -4.8 - - - - 2.18 -1.68 4.66 -3.6 -7.46 -4.48 - - - - - -
- - - - - - -5.41 - - - - - - 0.35 - - -9.14 - - - - 0.35 - 4.92 - -5.15 -4.82 - - - - - -
- - - - - - -3.93 - -1.29 - - -1.07 - -1.55 - - -4.14 - - - - 0.9 -1.18 4.86 -2.83 -4.58 -2.91 - - - - - -
-4.93 -3.58 -3.04 -0.98 -1.48 -2.29 0.25 -3.69 -3.88 -3.55 - 1.12 -1.46 0.54 -2.12 -2.72 -2.22 - -2.66 -4.53 - 2.33 -0.86 4.16 0.15 -1.15 -1.48 -6.52 -6.46 -5.57 -4.87 -5.01 -
- - - - - - -0.01 -3.01 - - - 0.16 0.3 - - -2.25 -3.6 - -0.6 -2.25 - 0.98 - 4.33 0.82 0.68 0.51 -1.16 -3.0 -0.57 - -1.97 -
- -12.31 -5.59 -2.0 -2.36 -2.62 -6.16 -8.17 -7.85 - -4.94 -0.13 -6.91 0.25 -3.94 -4.92 -5.76 -2.25 -8.09 -9.74 -4.85 2.07 -5.96 4.52 -3.54 0.35 0.45 -10.96 -8.21 -7.92 -10.86 - -6.07
- -6.02 -6.3 - - - 1.23 - -6.6 -7.69 -2.08 -2.9 -0.43 -2.34 -2.68 -1.59 -0.12 0.13 -0.2 -0.54 -1.16 -1.14 -0.78 4.22 -1.03 0.27 0.5 -1.48 -2.07 -2.5 -2.24 -0.22 -3.16
- - - - - - - - - - - 2.17 - 0.29 - - -6.06 - - - - 2.32 -4.15 4.41 -1.41 -1.33 -2.59 - - - - - -
- - - - - - - - - - - - -1.84 - - - -4.13 - - - - - - 4.89 -0.72 0.36 0.26 - - - - - -
-3.63 -2.86 -5.32 -4.53 -4.07 -4.41 -1.94 -5.08 -5.3 -4.71 0.23 0.88 -1.22 0.87 0.14 -0.27 -1.03 0.35 0.11 0.13 0.37 1.76 -0.07 3.28 -0.76 -0.83 -0.81 -0.99 -0.63 -0.33 -0.55 -0.54 -0.45
- - -7.55 - - - -6.12 -6.24 - - -5.89 0.56 - 1.03 -6.81 -6.9 -6.2 - -6.1 -6.17 -8.46 -0.9 -5.93 4.71 -4.03 -0.02 -0.11 -2.7 -4.35 -2.92 -5.25 -4.65 -2.11
- - - - -8.82 - -7.71 -5.5 - - - -1.57 - 1.58 - - -3.81 - - - - 3.12 -1.45 4.35 -5.03 -9.88 -5.46 - - - - - -
0.17 -0.05 -0.41 -0.76 -1.06 -0.66 -0.15 0.68 0.04 -0.21 -3.23 0.72 -2.38 1.42 -3.86 -3.21 -4.21 -4.37 - -5.22 - 2.5 -0.34 3.1 -1.73 -1.01 -1.11 -3.4 -0.52 -0.38 -4.24 -3.92 0.22
- - -5.79 - -9.43 -6.2 -0.68 - - - -2.03 1.47 -2.97 2.41 -5.4 -2.03 -3.05 -2.22 -6.02 -4.28 -3.47 3.11 0.41 3.01 -1.25 0.3 0.2 -1.87 -1.17 -2.16 -2.35 -2.81 -0.0
-3.39 -7.12 -6.85 -7.11 -5.86 -4.49 -3.91 -4.47 - - -1.72 1.71 -3.62 2.0 -4.14 -2.88 -2.31 -5.24 -2.54 -5.41 -4.21 3.24 0.92 3.1 0.03 -0.23 -0.03 -3.96 -1.99 -3.36 -4.0 -5.3 0.15
-1.67 -2.64 -0.69 -0.03 -0.19 1.26 -4.39 -4.94 -4.15 -5.51 -1.73 0.87 -2.76 2.67 -5.33 -1.99 -6.8 -3.34 -2.64 -6.17 -2.86 3.04 -5.46 3.12 -0.26 -2.69 -3.22 -3.42 - - -6.78 -7.11 -7.64
-2.67 -1.84 -3.28 -2.44 -4.84 - -0.02 - - - - -0.74 -1.9 0.42 -3.9 - -4.02 - - - - 0.05 0.62 4.58 -1.7 0.26 -0.09 -6.22 - - - - -5.81
- - -4.99 -1.29 - - - - - - - - - -1.09 - - -7.43 - - - - 1.62 - 4.84 - -2.21 -2.94 - - - - - -
-5.49 - - -3.06 -2.55 -4.57 - -2.68 -3.84 - - -0.61 -1.41 2.63 - - -0.21 - - - - 3.72 0.46 3.11 -0.92 -2.57 -1.62 -5.49 - - - -3.65 -
- -4.06 - - - -4.93 - - - - - - - - - - - - - - - - - 4.98 - -0.92 -1.05 -3.46 -4.82 -5.8 -6.02 -2.84 -3.74
- - - - -4.29 - -4.02 - - - -1.9 3.02 - 2.18 - - -7.48 - -1.29 - - 2.01 2.0 3.43 -0.47 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - 3.55 - 4.41 - - - - - - - - -
- - - -3.0 - - - -3.06 -3.22 - - 1.42 - - - - -5.57 - - - - 2.13 - 4.6 -1.18 -1.3 -3.63 -1.42 - - - - -
-0.74 -0.62 -0.98 -0.33 -0.31 -0.48 -0.99 -0.96 -1.1 -0.64 -1.51 0.73 -1.01 -0.17 1.39 -1.29 -1.96 -0.3 -0.89 -2.23 -1.76 0.5 -1.52 3.48 -0.45 -0.19 -0.15 -0.81 -1.19 -0.99 -0.89 -1.14 -1.53
-3.41 -1.16 -2.11 -1.81 -1.12 -1.5 -2.15 0.34 0.67 0.0 -2.14 3.11 -0.67 1.61 - - -1.6 - - - - 1.47 0.82 2.9 1.1 -7.89 -5.29 - - - - - -
- - - -6.9 - - - - - - - -0.74 -0.1 -0.19 - - -2.11 - - - - 1.71 -1.32 4.73 - - -3.03 - - - - - -
-7.19 - -8.12 -8.58 - - -6.01 -8.17 - - -6.7 -0.94 -1.85 0.24 -9.97 -8.47 -1.99 - - -9.07 - 1.4 -5.29 4.78 -0.84 -6.06 -4.08 - - -9.39 - - -8.89
- - - - -9.15 - - - -7.94 - -5.0 -0.37 -1.27 0.71 - -3.12 -0.63 - - -6.03 -7.0 1.85 1.92 4.21 -2.58 0.41 0.96 - -8.06 -6.38 -8.15 -5.94 -
-3.59 - -2.39 -1.87 -0.38 - - - - - - -3.11 - 2.59 - - 0.0 - - - - 4.12 1.53 1.17 - 0.19 -0.82 -5.18 - - -4.32 -2.17 -
-3.23 -2.21 -3.95 -2.73 -3.95 - 0.84 -5.02 -3.71 - - 0.41 -0.49 0.85 -5.1 - -0.04 - -4.14 - -5.17 -0.01 -3.23 4.25 -0.32 1.07 1.29 -4.68 -4.61 - - - -4.09
- - - - - - - - - - - - 1.83 - - - - - - - - 3.4 - 4.24 - - - - - - - - -
-5.69 -5.31 -3.42 -1.82 -0.49 0.05 -2.35 -3.13 -4.32 -2.85 -1.01 -0.67 -2.81 -0.48 -1.75 -0.5 -1.9 -0.77 -1.21 -1.18 -1.06 0.66 -3.0 4.03 -2.36 0.26 0.19 -0.02 -1.6 -1.24 0.09 0.32 -1.05
- - - - - - - -2.54 - - - 2.23 -1.43 1.08 - - -1.59 - - - - -0.87 1.25 4.34 1.01 -6.02 -3.35 - - - - - -
- -3.87 -6.88 -7.05 -6.61 -5.51 0.61 -5.2 -5.36 - -5.31 -0.53 0.38 -0.98 -3.76 - -1.52 - - -2.5 - 1.23 1.28 4.32 -0.18 -0.34 -0.72 -2.47 -2.02 -4.77 -2.65 -2.57 -1.74
- - - - - - - - - 0.4 - 3.3 - - - - - - - - - 2.37 - 3.42 - -2.0 - 0.42 0.67 - 1.45 - -
- - - - - - - - - - - - - - - - - - - - - 2.37 - 4.8 - - - - - - - - -
- - - - - -6.26 -5.56 - - - -2.84 0.15 0.06 1.5 2.41 -0.51 -1.96 -3.51 -1.57 -1.79 -1.9 2.29 -1.43 3.51 0.26 -3.94 -3.34 0.21 -5.42 - 0.12 -1.85 -5.63
- - - - - - - - - - - - - - - - - - - - - 1.87 - 4.88 - - - - - - - - -
- - - - - - - - - - -2.2 -5.43 -1.85 - -1.83 -1.34 -6.31 - -1.64 -3.93 -2.67 -1.98 1.6 4.72 -1.92 -0.41 -0.7 - - - - - -
- - - - - - - - - - - 3.14 - - - - - - - - - - - 4.6 - - - - - - - - -
-7.75 -4.22 -3.83 -3.59 -2.5 -1.1 -0.66 -3.71 -3.81 -3.23 - -0.78 -3.08 0.98 - - -4.97 -3.94 - -5.11 -5.08 0.45 -1.33 4.7 - -3.59 -2.94 -4.28 -3.63 -2.97 -4.45 -5.55 -2.53
- - - -6.19 -5.37 - - - - - -3.55 0.61 -1.98 0.76 -1.62 -2.67 -3.18 -1.09 -5.2 -5.26 -1.69 2.15 -1.55 4.07 -1.67 0.42 0.4 0.6 -1.93 -2.91 -1.55 -0.18 -1.9
-4.88 - -6.2 - - - - -7.46 - - - 0.34 -2.08 -0.56 - - -3.07 - - - - 2.24 1.1 4.54 -2.57 -2.95 -2.34 - - -7.61 - - -
- -6.79 - - - - - - -10.22 -8.32 - -1.11 -2.26 -2.86 - - -1.74 - - - - 1.51 -0.49 4.24 3.06 -3.1 -0.03 - -7.14 - -8.43 - -7.82
-3.69 -3.02 -3.82 -6.13 -4.33 -3.34 -1.2 - -3.74 -6.61 -1.38 -0.24 0.11 0.18 -0.28 -1.43 -2.61 -0.16 -0.96 -1.88 -1.46 0.44 -2.6 4.13 -2.68 0.68 0.39 -1.19 -2.2 -2.82 0.37 -0.32 -2.74
- - - - - - - - - - - - - 2.86 - - - - - - - 3.49 1.08 3.64 - - - - - - - - -
-4.94 -6.15 - - - - -5.25 - - - - 1.67 -4.3 0.3 - - -4.58 - - - - -0.26 -0.76 4.62 - -1.02 0.57 -2.71 -3.63 -3.67 -2.86 -5.38 -
-4.17 -5.46 -3.06 -2.56 -1.21 -0.78 -1.66 -8.51 -9.06 - -5.62 -1.83 -0.23 -1.7 - -3.75 -1.72 - -7.69 -6.17 - 1.11 -1.9 4.38 -0.13 0.97 0.82 -1.24 -2.21 -4.53 -3.68 -0.55 -3.22
- - - - - - - - - - - 1.32 - 0.46 - - -3.51 - - - - -2.13 -0.66 4.73 - -1.24 -0.72 -2.51 -2.31 -3.54 - - -3.39
- - - - - - 1.39 - - - - 3.1 0.34 3.1 - - -1.51 - - - - 1.63 1.3 2.31 - - - 0.11 - - - - -
- - - - -3.03 - - - -0.42 - - - -1.88 - - - -2.7 - - - - 2.41 1.38 4.12 - -1.93 -0.98 0.46 0.82 -0.52 -0.34 -1.27 -0.75
- -7.32 - -7.21 -3.91 - 0.67 - - - -0.6 -0.2 -4.99 0.07 - -4.02 -0.55 -0.35 -0.45 -2.15 -0.58 -1.51 -2.18 4.36 -1.57 0.05 0.35 -2.2 -1.02 -1.39 -2.41 -2.62 -1.34
-3.58 -5.45 -5.18 -2.42 -0.83 -0.26 -2.46 - -7.23 - -3.09 0.28 -0.57 1.98 - -2.58 -1.42 -4.74 -3.52 -5.91 -3.56 2.87 0.63 3.61 -0.57 -0.21 0.01 -3.42 -2.29 -2.66 -3.13 -3.79 -2.87
-3.97 -4.04 - -3.02 -1.41 -2.39 -1.28 -3.09 -1.78 - - 0.57 1.16 2.52 - - 0.38 - - - - 1.79 -0.77 3.74 0.97 -2.46 -0.11 - - - - - -3.21
- - - -2.71 - - - - - - - - -2.9 - - - -4.24 - - - - -4.49 -3.68 4.85 -0.32 0.79 0.18 - - - - - -
- - - - - - -1.45 -5.22 - - -3.55 3.52 -4.51 2.31 - -4.54 -1.13 -5.37 - - - 1.86 - 2.96 0.98 -0.33 -0.09 - -2.65 -2.82 - - -2.91
- - - - - - - -2.2 -0.25 - - 0.45 - 0.9 - - - - - - - 2.35 1.48 4.24 - -0.53 0.27 - - - - - -
-1.6 -3.09 -2.36 -0.77 -0.63 - -1.06 -0.93 -0.18 -6.87 -4.04 2.84 -1.45 2.94 -0.99 - -2.07 -3.6 -5.28 -5.35 -5.32 2.18 -0.08 2.4 -1.9 -2.77 -1.85 -6.57 -2.79 -0.42 -6.35 -6.29 -0.62
- -2.43 - - - - - - - - - 2.82 - 1.62 - - - - - - - 1.13 - 4.31 - - -1.83 - - - - -1.46 -
- -4.89 -4.4 - -4.57 - -7.38 - -7.37 - -7.47 - -3.85 - - - -7.32 - - - -5.43 -5.76 -2.31 4.94 - -0.34 -0.11 -7.68 - - - -3.67 -
-3.56 -2.69 -3.96 -2.78 -4.17 -3.14 -0.65 -2.6 -3.29 -4.37 -3.39 0.79 -0.66 0.21 -5.67 -2.06 -1.37 -2.69 -2.89 -3.18 -2.03 1.18 1.07 4.3 -0.05 -0.3 -0.7 - -5.17 -7.63 - - -4.43
-1.27 -3.44 -3.17 -4.34 -2.72 - - -1.91 - - - 0.81 -1.7 0.53 - - 0.46 - - - - 2.68 0.56 4.07 -1.02 -0.73 0.22 - - - - - -3.54
- - -0.33 -3.18 -1.86 -1.96 - -0.88 -4.62 - -5.58 -0.53 1.78 1.09 - - -6.66 -1.54 - - -3.68 2.91 - 3.7 0.85 -0.6 -0.82 -1.46 - -5.57 -2.7 -2.13 -
-1.78 -2.34 -0.97 -3.08 -5.06 - -1.38 -8.58 -7.66 -8.84 - -1.76 -1.64 -3.49 - - -3.72 - - - - -1.8 -1.93 4.86 -2.74 -0.92 -1.35 -5.17 - -8.73 - -5.85 -6.35
-5.79 - -7.24 -7.5 -5.26 - 0.71 - -4.48 - -0.11 2.05 0.3 1.6 -2.04 0.01 -1.79 -1.07 -1.55 -1.12 -1.67 1.54 1.63 3.24 0.02 -4.93 -4.27 -3.76 -1.07 0.21 -2.31 -3.39 -1.76
-3.26 -1.91 -3.89 -5.48 -4.81 - -0.72 - -4.17 - -0.08 2.8 -0.88 0.98 -0.12 -2.27 -1.36 -1.34 0.93 -3.78 -0.61 1.33 -2.23 3.44 -1.15 0.56 0.42 - - - - - -5.67
- - -7.17 - -7.5 -6.65 -7.35 - -9.51 - -2.58 2.31 -7.17 1.43 -5.92 -3.25 -6.85 -3.63 -5.04 -4.19 -4.7 1.71 -2.16 4.26 -2.55 -0.1 -0.02 -7.19 -4.71 -4.96 -7.25 -8.25 -4.83
-6.65 -10.17 - - - - -5.36 - - - -2.68 1.74 -8.56 0.53 -2.32 -3.78 -5.96 -3.03 -4.94 -5.01 -4.39 0.38 - 4.55 -5.87 0.23 0.37 -6.61 -4.69 -3.3 -7.71 -7.53 -3.98
- - - - - - - - - - - - 0.17 0.81 - - -4.53 - - - - 0.34 - 4.82 -1.03 - -4.31 - - - - - -
- - - - - - - - - - - - 0.66 - 1.72 - 0.33 - - - - 3.43 1.6 3.27 1.76 - - - - - - - -
-0.0 -0.2 -1.88 -2.08 -0.69 -0.62 0.46 -3.01 -3.28 - -2.69 0.41 -1.54 -0.02 - -4.55 -0.69 - -2.9 -4.14 -6.11 -0.65 -2.0 4.25 -1.2 0.66 0.96 -6.97 -5.97 -5.11 -5.63 -7.08 -4.43
- - - - -3.31 - - - -4.87 - -3.24 3.31 - -0.54 - -0.25 -6.59 -2.21 - - -1.34 0.08 -1.4 4.06 -2.24 0.52 -0.11 - - - - - -
- - - - - - -5.29 - -6.17 - - -1.78 -5.3 -0.47 - - -9.06 - - - - 0.81 -5.36 4.91 -4.2 -7.66 -4.38 - - - - - -
- - - - - - - - - - -5.91 -2.96 - - - - -9.3 - - - - -2.92 1.13 4.85 -5.91 -0.36 -0.51 -6.88 -3.92 -5.4 - - -5.85
- -6.99 - - - - -5.47 - - - -2.8 0.32 -1.98 - - - -2.1 - - - - -1.42 -3.43 4.84 -0.32 -1.1 -0.53 -6.42 -8.45 -7.32 -6.72 -8.48 -
- - -7.23 - -5.71 -4.59 - -3.53 - - -3.86 -1.58 1.07 1.02 0.4 - -2.01 -0.08 -5.74 - -4.45 1.36 0.31 4.11 0.14 0.82 0.82 - -6.54 - - - -
- - - - - - - -5.02 -2.85 -3.28 - 3.53 - 1.62 - -2.93 -4.85 - - - -4.23 1.68 1.34 3.41 0.6 - -7.61 - - - - - -
-7.2 - - - - - - - - - - -2.91 -1.55 -2.59 -1.74 - -3.24 - -3.94 -6.59 - -2.08 -2.44 4.62 -1.41 1.03 0.98 0.36 -2.58 -4.2 -0.64 -1.5 -
- - - - -0.52 - - - - - - 1.8 - - - - - - - - - 3.49 - 4.08 - - -0.63 - - - - - -
- - - - - - - - - - - - -2.8 - - - -3.17 - - - - - - 4.99 - -1.19 -0.95 - - - - -5.92 -
-0.58 -1.33 -0.07 -0.1 0.34 -0.11 -0.74 -0.34 0.02 -1.7 -3.45 3.01 -4.1 2.47 0.47 -5.31 -4.93 -5.25 -5.99 -6.92 -6.19 2.19 -0.09 0.6 -1.65 -1.67 -2.02 -4.88 -2.43 -0.55 -3.95 -4.92 -0.05
- - - -2.82 -2.55 -1.81 -3.52 -2.49 - 0.46 -2.84 1.04 -1.0 -4.71 - - -4.15 - - - - 1.48 - 4.59 -1.17 -3.11 -2.23 -3.07 -3.21 -4.04 - -5.53 -3.94
- - - - - - - - - - - - - 0.27 - - - - - - - 1.9 - 4.78 - -1.12 -3.29 - - - - - -
-4.44 -4.08 -5.55 -1.52 -1.25 -0.73 0.87 - -7.01 - -2.94 -0.94 -1.37 -1.65 -5.61 -3.53 -0.87 1.14 -0.97 -2.12 -1.12 -1.23 -1.24 4.25 -1.82 -0.12 0.27 -2.19 -1.08 -1.46 -2.55 -2.25 -1.1
- - - -4.27 - - - - -1.88 - - -2.69 0.12 2.61 - - -1.93 - - - - 2.95 1.59 3.68 -1.32 -3.46 0.04 - - - - - -
- - - - - - - - - - - - -0.43 - - - -8.28 - - - - -4.84 -4.03 4.78 - 0.61 0.44 -0.77 -4.74 - -1.82 -0.03 -
- - - - - - - - - - - 2.85 - - - - -2.78 - - - - - - 4.63 - - - -0.16 - - - - -
- - - - - - - - - -7.45 - -0.11 -1.85 -0.59 - - -2.39 - - - - 2.12 -0.51 4.19 1.8 -2.81 -0.57 -3.19 -1.99 -0.93 -2.97 -7.38 1.21
-10.29 -8.01 -5.58 -6.34 -6.4 - -5.91 -6.24 - - -7.08 -0.23 -3.32 0.33 -5.1 - -5.5 - - - - 2.56 -1.03 4.58 -1.6 -7.69 -8.08 -6.75 -6.99 -7.97 -9.43 -7.68 -5.8

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.