Heatmap: Cluster_38 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - - -4.83 - - - -2.98 4.59 2.05 - - 0.05 - - - - 1.43 -4.1 - - -3.59 -0.46 - - - - - -
-4.52 -1.68 - - - - -0.9 - - - - 0.8 3.74 1.46 - - 0.86 - - - - 2.01 0.75 -2.7 0.59 0.83 1.7 - - - - - -3.43
-4.63 -4.6 - - - -6.24 -2.15 - - - - -1.46 3.86 0.62 - - 2.61 - - - -6.1 1.45 2.42 -3.7 -4.0 -2.42 0.62 - -5.54 -2.3 - - -4.64
- - - - - - - -9.93 -10.08 - 0.44 -4.69 3.91 -6.07 - -2.05 2.31 -1.57 -1.99 -3.88 -2.28 -9.01 -6.39 -9.33 - 1.48 2.94 - - - - - -
-1.48 -1.7 -2.41 -2.83 -3.86 -5.85 -0.67 -5.0 -8.49 -5.09 -1.79 1.7 3.15 1.68 -2.71 -1.62 -0.91 -2.6 -2.06 -2.72 -2.78 1.21 2.57 1.35 1.15 -2.01 -0.77 -6.68 -6.01 -10.26 -8.27 -7.97 -5.79
-1.57 -3.2 - - - - -2.3 - - - - -2.87 2.95 1.05 - - 1.48 - - - -2.92 1.38 2.66 -0.11 -0.5 1.73 2.45 - - -3.86 -4.08 - -
- - - - - - - - - - - - 4.25 - - - -0.29 - - - - - 2.68 2.55 - - -0.25 - - - - - -
- - - - - - - - - - - - 4.66 - - - 2.36 - - - - - - - - -3.82 1.3 - - - - - -
- - - - - - - - - - - - 5.03 - - - -1.54 - - - - - - - - - - - - - - - -
- - - - - 0.55 - -0.09 - -0.34 1.12 - 4.49 - - -0.32 -2.39 - - - - - - - - 0.47 1.5 - - - - - -
-0.8 -0.15 -5.21 -2.66 -2.45 -1.67 -1.56 - - -1.13 - -2.69 4.04 - - - -1.06 - - - - 0.31 3.32 -1.35 - -1.69 -1.65 - -3.7 -1.6 -3.77 - -2.5
- - - - - - - - - - - - 4.19 - - - 0.49 - - - - 1.23 2.42 - 2.49 - -5.8 - - - - - -
- - -8.35 - - -7.16 - -6.21 - - 1.46 -4.37 3.39 -4.62 -3.94 -0.38 2.82 -0.16 -0.81 -2.04 -0.88 - - - -1.15 1.39 2.68 - - - - - -
- -3.57 - - - - - - - - - -0.44 4.29 - - - 0.5 - - - - - 3.1 0.42 -0.39 -4.93 -4.07 - -2.49 -1.71 - - -
- - - - - - - - - - - - 3.13 - - - 4.02 - - - - - -2.65 -8.34 0.38 0.74 2.31 - - - - - -
- - - - - - - - - - 0.14 -1.84 - - -0.66 - 1.42 - -0.7 -0.76 - 1.34 2.67 -0.28 2.31 2.58 2.69 - - - - - -
- - - - - - -4.41 -4.2 -4.75 - 0.55 2.39 2.45 -0.08 2.15 -2.32 -1.19 -3.28 -4.38 -3.44 -2.3 -0.51 1.18 -0.83 2.51 1.44 1.09 - - - - - -3.22
-4.49 - -4.5 -4.58 -5.49 - -8.33 -7.13 - - 2.07 -3.58 3.77 -5.28 -1.3 0.64 1.74 0.47 0.19 0.22 0.17 - - -4.44 -1.57 0.2 1.71 - - - - - -
- - - - - - - - - - - -2.16 3.91 -1.15 - - 2.36 - - - - 1.45 1.46 2.08 - -2.76 1.2 - - - - - -
- - - - - - - - -4.44 - -6.39 - 4.7 -1.52 - -4.52 1.09 -5.36 - -5.52 - -5.53 1.62 - -0.49 -5.55 -0.93 - - - - - -
-5.84 -3.69 -1.09 -6.46 -2.87 - -2.22 - - - - - 1.46 - - - 3.64 - - - - - - - - -0.2 3.87 -1.92 -5.88 -4.14 -2.77 -0.54 -2.93
-0.62 -0.96 -1.73 -1.36 -1.47 -3.14 -2.83 -2.94 -3.45 -2.97 0.2 0.29 3.23 0.54 -4.59 -0.46 1.97 -0.94 -1.94 -2.97 -1.73 -1.81 1.59 -0.03 0.52 0.17 1.3 -1.22 -1.94 -2.59 -3.36 -1.5 -1.11
- -5.42 - - - - -3.63 - - - - -0.66 3.99 -0.3 - - 3.18 - - - - 2.37 -0.1 -4.09 -3.8 -5.23 -1.69 - - - - - -
- - - - - - -5.56 - - - - -0.05 4.0 1.1 - - 2.94 - - - - 2.36 -0.41 -4.77 -3.9 -8.8 -2.5 - - - - - -
- - - - - - - -2.51 - - 2.12 - 3.46 - - -0.16 2.02 - - 0.25 - - - - - 1.51 3.09 - - - - - -
- - - - - - - - - - -0.21 - 4.18 - - - 1.99 -1.96 - - -4.42 - - - - 1.36 2.84 - - - - - -
-5.37 -3.98 - - - - -5.68 -3.51 - - - -3.08 3.8 1.07 - - 2.44 - - - - 0.9 0.89 1.62 0.08 -1.12 1.45 - -5.68 -4.79 - - -3.64
- - - - -8.09 - - -4.62 -6.78 -4.87 - -0.97 4.25 -0.01 - - 2.71 - - - - 0.95 -4.31 -5.02 0.88 -0.54 0.32 - - - - - -
- - - - - -2.41 - - - - - - 4.68 - - - 0.72 - - - - -1.64 2.15 - - -2.05 -0.68 - - - - - -
-2.25 -3.79 - - - -4.45 0.54 -2.77 -1.79 - 0.31 -0.16 3.71 -0.33 - -1.33 1.67 -2.16 -0.27 -0.87 -0.98 -0.47 -2.04 -0.17 0.05 1.43 1.79 - - - - - -
- -7.01 - - - - -9.26 - - - - -4.66 3.28 -5.43 - - 3.92 - - - - - -2.45 - 0.75 0.57 1.94 -0.4 -7.67 - -3.16 -6.67 -5.39
0.97 2.0 -3.94 -2.73 -4.99 -3.82 1.59 -6.56 - -3.27 - -3.66 1.46 - - - 3.61 - - - - - -1.19 - -1.61 1.49 2.22 -3.43 -4.72 -2.5 -5.87 - -5.62
- - - - -9.28 - -7.99 - - - 0.32 -6.97 4.05 - -5.38 -1.15 2.53 -0.07 -1.79 -2.25 -1.41 - - -6.22 -5.34 0.46 2.51 -8.28 - - - - -
- - -5.55 - - - - -0.67 - - - - -2.62 - - - 1.42 - - - - -0.8 3.98 -1.07 0.06 2.28 2.37 -3.25 -2.12 -1.95 -4.01 -2.21 -0.51
- - - - - - - -3.21 - - 2.06 - 4.19 - - - 2.81 -0.28 - -2.45 -2.42 - - -2.61 - -1.77 0.82 - - - - - -
-2.41 -1.36 -1.84 -1.99 -0.7 -1.24 -1.03 - -5.71 - 0.39 -1.14 2.93 -0.62 -2.01 -0.57 1.59 -0.24 -0.98 -2.26 -1.1 -1.05 -0.68 -1.17 -0.53 0.65 1.89 0.02 0.32 0.02 0.18 0.48 0.02
-1.9 -1.28 -1.1 -0.59 -1.39 -3.53 -4.45 -2.16 -2.15 -4.83 1.13 -0.54 2.02 -1.59 -1.58 0.84 1.92 -0.36 0.43 1.16 1.22 1.07 -0.66 -1.56 1.02 -0.32 0.27 -0.74 -0.83 -1.02 -0.81 -1.19 -0.86
-5.06 -3.21 - -5.67 - - -3.16 - -6.41 - -6.37 -1.79 3.58 0.53 - -7.08 2.72 - -7.02 -7.08 - 1.36 2.64 -4.92 -3.95 -1.5 1.45 -6.48 -6.53 -1.9 - -8.15 -3.7
-4.95 -4.32 - -3.78 -1.34 - -2.02 -0.61 -0.84 -1.21 - -0.06 3.97 -4.59 - - 0.54 - - - - 1.38 2.74 - 1.6 -7.64 -3.53 - - - - - -
- - - - - - - - - - - - - - - - 4.56 - - - - - - - - 2.56 1.83 - - - - - -
-4.45 -5.54 -5.54 -4.86 -8.69 -9.07 -5.44 - -5.65 -6.23 0.89 -4.08 3.95 - -6.93 -1.59 2.67 -0.48 -1.78 -2.86 -1.72 -7.87 -2.43 -0.09 -0.79 0.38 2.05 -6.21 -8.0 -6.07 -8.09 -6.77 -4.0
- - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 3.21 - - - 3.14 - - - - -0.58 2.63 -0.23 1.28 -1.2 2.06 - - - - -2.39 -
- - - - -6.81 - - - - - 0.74 - 4.21 - - 0.47 1.4 0.31 -0.43 -0.85 -1.38 -2.58 - - -2.53 1.26 1.62 - - - - - -
- - - - -6.97 -4.93 - - - - - -4.73 2.08 1.19 - - 2.02 - - - - 1.3 1.57 1.22 0.99 1.13 2.48 -1.39 0.68 0.45 -0.02 -3.05 -1.24
- - - - - - - -4.89 - - - - 4.54 - - - 2.32 - - - - - - - - -1.5 2.11 - - - - - -
- - - - - - - -3.6 - - 1.19 - 3.81 -2.83 -3.41 0.58 2.51 0.48 0.61 -0.14 0.58 - - -4.18 - 0.02 1.47 - - - - - -
- -4.47 -4.95 - - - - - - -5.52 - -4.43 4.02 - - - 3.13 - - - - 1.07 -1.37 -4.68 1.37 0.11 0.76 - - - - -5.58 -
-3.11 -2.91 -5.89 -6.61 -7.18 - -2.15 -5.4 -8.55 - -4.02 -0.31 3.4 0.38 - -3.64 1.82 -5.48 -3.71 -4.43 -3.12 2.33 2.01 -1.16 0.01 -0.22 0.79 -1.39 -1.09 -1.08 -1.23 -1.45 -0.52
-4.48 - - - -5.11 - -3.76 -3.59 - - - - 3.55 -0.71 - - 2.45 - - - - 0.01 0.82 -2.99 2.98 -0.02 0.8 -0.01 - - -1.17 -3.77 -
- - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - -
-1.85 - - - - - -1.13 - - - - - 4.61 - - - 1.64 - - - - - - - - 0.24 0.79 - -2.23 0.43 -1.98 - -
- - - - - - - - - - - - 4.98 - - - 0.61 - - - - - - - - - - - - - - - -
- - - - -9.74 - - - - -6.23 - -2.97 4.12 -2.66 - -5.92 2.58 - - - - -0.39 2.23 -1.18 1.64 -5.73 -1.57 - - - - - -
- - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - -
- - - - -7.94 - - - -4.92 - - -2.33 2.58 3.11 - - 1.89 - - - - 2.4 0.16 -3.43 1.32 0.74 1.93 - - - - - -
- - - - - - - - -3.79 - - -1.79 4.53 -0.7 - - 1.78 - - - - 1.58 1.16 - - -2.99 -3.56 - - - - - -
- -3.53 - -4.38 - - -4.25 - - - -3.42 -2.46 4.57 -2.08 - - 1.59 - -6.07 - - 1.21 0.92 - -0.61 -2.46 -1.23 - - - - - -
- - - - - - -4.05 - - - -2.02 0.29 3.98 2.22 0.44 -1.53 0.49 - - -3.12 -0.77 -1.02 1.81 -1.69 - -1.7 0.29 -1.07 -1.54 -1.75 -4.24 -3.0 -2.97
- - - - - - -3.71 - - - - - 4.14 1.59 -2.66 - 0.12 -2.58 -1.69 -2.75 - 1.06 2.74 -2.91 - -2.08 -0.22 -2.85 -2.68 -2.66 - - -
- - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - -
- - - - - - - -6.41 - - - -4.24 4.27 - - - 2.89 - - - - -2.12 0.28 -2.73 2.06 -7.71 -1.11 - - - - - -
- - - - - - - - -2.79 - 1.68 -1.79 4.74 - - -0.29 -0.69 - - - -0.26 - - - - -3.55 -2.04 - - - - - -
-0.03 0.23 -1.39 -2.04 -1.74 -3.34 0.74 -0.27 -1.52 -1.08 -1.93 0.89 0.88 0.92 1.52 -1.72 1.95 -4.08 -0.94 -2.66 -2.89 1.39 0.22 0.15 -0.26 0.24 0.45 -0.78 -0.19 -0.57 -0.17 -0.66 -0.33
-4.68 -3.34 -5.96 -6.58 -7.91 -8.69 -0.27 - -9.94 - 1.34 -1.08 2.41 -2.64 -0.77 -0.35 2.37 -0.99 0.08 -0.51 -0.45 -1.29 -1.9 -1.99 1.06 1.94 2.06 -3.81 -2.01 -0.23 -3.59 -3.27 0.66
-3.44 - -3.29 - - - -2.78 - - - - - 4.38 - - - 0.62 - - - - - - - - 1.72 2.78 - -2.75 - - - -
- - - - - - - - - - - - 4.64 -1.12 -2.71 - -0.17 - - - - -1.68 2.56 - -3.67 - -2.25 - - - - - -
-0.21 -1.0 -3.39 -3.01 -3.33 - -0.45 -1.51 -2.52 - 0.25 -0.28 2.99 1.21 - 0.13 2.27 0.65 -0.62 -0.37 -1.07 0.95 0.99 -0.85 0.9 -1.83 0.29 -3.91 -0.98 - - - -
- - - - -10.09 - - -10.2 -10.76 -8.45 -0.1 -4.97 4.02 -5.1 -6.03 -1.86 2.36 -2.01 -3.13 -3.38 -3.01 -7.48 -1.02 -1.51 -2.4 1.64 2.5 -9.55 -8.23 -10.31 -8.01 -7.42 -7.53
- - - - -5.28 - - - - - -0.23 - 3.83 - -4.04 -1.7 2.86 0.59 -1.07 -1.71 0.39 -6.3 -0.68 -1.76 0.01 -0.31 1.75 -3.26 -6.39 -4.55 -3.83 -5.2 -1.67
- - - - - - - - -3.75 - - 0.79 3.84 - - - 2.92 - - - - 2.41 1.84 - - -3.84 -1.69 - - - - - -
- - - - - - - -3.51 - - - - 3.69 2.36 - - 2.23 - - - - -1.53 2.67 - -2.62 -0.51 1.39 - - - - - -
- - - - - - - - - - - - 3.48 0.37 - - 2.71 - - - - 0.21 2.44 -0.81 -0.67 0.48 2.26 - -3.72 - - - -
- - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - -
- - - -1.95 -6.58 - - -4.09 - - 1.61 - 4.04 - - -0.05 1.31 0.53 -0.69 -1.25 -0.72 - - -2.69 -3.21 1.22 2.0 - - - - - -
- - - - - - - -4.71 - - -6.09 - 4.62 - - - 2.03 - - - - -3.08 1.65 -0.86 -1.75 -5.28 -2.26 - - - - - -
- - - - -7.66 - - - -6.75 - - -0.14 3.75 0.23 - - 2.15 - - - - 2.22 2.22 -1.35 1.2 -3.64 -0.02 - - - - - -
-3.58 -1.27 -4.94 -5.58 -5.94 - 0.08 -8.13 -5.69 -5.39 -2.54 0.53 3.94 0.78 -4.37 -3.13 -1.25 -2.36 -4.47 -3.56 -3.27 2.35 1.62 0.65 0.01 -3.78 -3.75 -5.45 -2.05 -1.88 -4.13 -7.45 -2.61
- - - - -6.85 - -7.38 - - - 1.58 -3.39 4.14 -6.32 - -1.02 2.49 -1.49 -3.08 -4.83 -3.8 -3.33 - -3.57 -2.06 0.78 1.76 - - - - - -
- - - -3.17 -5.61 - - -4.02 - - - - 0.82 - - - 3.85 - - - - - - - - -0.31 3.87 -1.72 - -4.29 -3.32 -0.46 -4.15
- - - - - - - - - - - - 4.52 - - - -1.4 - - - - - - - 3.27 - - - - - - - -
-8.23 -7.07 -8.62 -13.29 -12.17 -10.08 -4.89 -9.78 -10.44 -10.94 -12.47 -1.52 4.31 -1.34 - - 1.24 - - - - 0.46 2.92 -5.51 -1.86 -3.04 -0.8 -9.25 -10.82 -12.64 -10.94 - -8.88
- - - - -10.62 - - - - - 1.41 -4.31 3.51 -5.71 -4.71 -0.47 2.53 -0.15 -0.59 -1.59 -0.7 -6.43 - -3.34 -8.26 1.98 2.54 - - - - - -
-1.32 -1.3 -5.16 -5.4 -6.06 -4.77 - - - - 1.03 - 3.92 - - -4.7 2.09 -0.73 -3.64 - - - -4.74 -4.87 -0.88 1.26 2.8 - - - - - -
-0.24 -0.45 -2.53 - - - 1.13 - - - - - 2.77 - - - 3.42 - - - - 1.05 -1.13 1.07 0.84 1.23 1.21 - - -1.13 - - -
-1.48 -2.29 -3.76 -6.71 -5.37 - 0.29 -3.07 -6.33 -5.36 -0.24 0.2 3.57 -1.6 -1.75 -2.31 2.0 -0.02 -1.1 -2.85 -1.53 -0.33 0.34 -0.53 0.04 1.36 1.99 - - - - - -
-2.56 - - - - - - - - - - - 4.35 - - - 0.32 - - - - - 0.44 - - 1.75 2.65 -2.48 - - - - -
-0.28 0.6 -1.74 - - - 3.23 - - - - - -1.27 - - - 3.43 - - - - - - - - 2.31 2.13 - - -1.21 - - -
- - - - - - -6.57 -5.4 -3.79 - -1.92 -2.23 4.6 -3.54 - -3.05 0.64 -2.15 - - - -0.69 - - -0.22 -0.26 1.98 - - - - - -
- - - - - - - - - - - - 4.58 - - - 2.62 - - - - 1.19 - - - -2.33 -1.28 - - - - - -
-1.45 -1.15 - - - - -1.4 - - - - - 4.23 0.75 - - -0.26 - - - - 2.7 0.63 - 0.34 -0.93 -0.58 - - - - - -
- -2.43 - - - - - - - - - - 4.2 - - - -2.02 - - - - 2.24 - 3.15 - -1.93 -3.87 - - - - -1.79 -
- - - - - - - - - - - - 4.36 - - - 3.2 - - - - - - - - -2.91 1.66 - - - - - -
- - - - - - -6.64 - - - 0.44 -5.59 4.6 - - -2.62 1.71 -2.45 -7.2 - -5.23 -5.04 - - - -0.44 1.57 - - - - -7.99 -
- - - - - - - - - - - -2.71 3.77 1.38 - - 1.45 - - - - 1.28 1.76 1.29 - 0.61 2.03 - - - - - -
-0.72 -0.16 -5.01 - -7.62 - 0.55 -4.53 - - -7.39 0.01 3.38 -1.96 - -4.93 2.88 - - - - 1.65 -0.04 -2.59 -1.86 0.69 1.55 -4.97 -1.45 -0.08 -2.57 -5.37 -1.86
-3.34 -2.43 - - - - -3.51 - -4.39 - - - 4.38 -1.87 -2.45 - -0.84 - - - -2.52 -0.14 3.04 -2.71 - -1.26 -1.11 - - -2.5 -2.09 - -
-5.15 -4.45 -4.91 -5.58 -5.53 -8.83 -3.53 - -8.07 - -3.29 0.82 3.53 1.48 -3.63 -2.41 0.34 -3.94 -3.97 -3.51 -3.8 2.31 2.72 -0.45 0.51 -2.36 -0.33 - - - - - -8.37
-1.98 -0.93 -3.3 -5.74 -5.82 -4.57 -0.66 -7.17 -4.74 -5.03 1.05 -2.24 1.97 -3.15 -4.23 0.56 1.73 1.09 1.61 1.08 1.4 0.3 -0.56 -0.61 -0.12 0.71 0.62 -1.79 -2.52 -1.75 -1.61 -0.11 0.64
- - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - -
-0.96 -1.83 -1.59 -2.49 -2.05 -1.05 -0.85 1.08 0.19 -1.03 -1.18 0.97 1.76 0.39 -0.12 -1.21 1.08 -1.29 -4.15 -5.21 - 0.77 2.54 -4.37 0.89 1.43 1.44 -4.58 -2.4 -1.92 -5.34 -3.79 -2.25
-5.6 -3.33 - -4.16 -5.31 -3.7 -4.58 -3.38 -0.6 -1.54 0.08 - 3.11 - -2.52 - 2.98 -0.75 -0.23 -1.3 -1.59 -4.46 -2.33 -2.46 -1.49 -0.55 0.89 0.72 0.04 0.51 0.01 -0.07 1.2
- - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - -
-5.57 -8.24 -6.82 -6.51 -6.11 - -6.07 -9.2 - - -7.13 0.37 3.36 -0.24 -6.76 - 2.11 - - - - 2.56 2.0 -4.35 2.25 -1.84 0.28 -9.27 -7.39 -8.32 -9.21 - -
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- -8.89 -5.99 -9.7 -8.82 - - -7.14 -7.92 -4.62 1.61 -2.67 2.63 -5.28 -6.09 -1.2 3.19 -0.83 -0.56 -1.28 -0.77 -5.57 - -4.88 -3.59 1.96 2.93 -5.11 -7.53 -7.53 -5.59 -5.96 -6.24
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- - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.