Heatmap: Cluster_375 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-1.6 -1.36 -2.75 -2.65 -2.23 -2.85 0.81 -3.04 -2.45 -2.24 -0.73 0.51 0.98 0.23 -1.71 -1.03 0.1 -0.74 -0.56 -1.12 -0.82 0.6 0.49 0.2 -0.6 -0.36 0.1 0.79 1.64 1.54 0.91 0.43 1.29
-5.94 - - -7.02 -7.48 - 0.61 - - - -1.42 0.19 1.45 0.02 -1.77 -0.34 0.7 -1.84 -0.64 -1.49 -0.51 0.86 0.91 -0.37 -0.65 0.13 0.36 0.39 1.73 1.62 0.89 0.6 1.55
-7.82 -5.92 -9.15 -6.63 -6.87 -8.54 0.73 - -7.74 - -0.82 0.43 1.18 -0.14 -1.08 -0.44 0.49 -1.69 -0.77 -0.55 -0.46 0.81 1.05 -0.08 -0.53 -0.76 -0.41 0.77 1.67 1.76 0.99 0.6 1.45
-0.56 -0.39 -2.95 -2.72 -5.95 -5.31 0.04 -4.56 -4.93 -5.79 -2.07 0.52 1.1 0.22 -2.6 -2.78 0.98 -5.61 -2.33 -3.46 -3.17 0.74 1.46 -1.45 -0.14 0.11 0.49 0.98 1.2 1.72 1.39 1.01 1.04
-2.12 -1.66 -3.64 -3.21 -3.99 - 0.84 - - - -2.44 -0.71 1.01 -0.32 -3.41 -1.5 -1.67 -1.75 -3.44 -1.5 -1.15 0.64 0.96 1.04 -1.79 -1.14 -0.64 1.19 2.34 2.1 1.33 0.77 1.04
-1.22 -1.09 -1.92 -1.45 -2.17 -2.14 0.62 -2.51 -2.6 -2.84 -1.28 -0.26 0.71 -0.25 -0.8 -0.93 0.29 -1.73 -1.15 -1.44 -1.29 0.63 1.33 0.82 0.1 0.02 0.15 0.69 1.29 1.48 0.67 0.56 1.31
-6.62 -7.1 - -3.39 - -4.36 0.62 -4.21 - -4.66 -1.7 0.34 1.17 0.98 -1.46 -1.15 0.9 -4.15 -1.29 -1.56 - 1.02 1.6 0.71 -0.21 -0.12 0.38 0.97 0.84 1.33 1.17 0.66 1.02
-2.24 -1.76 -2.57 -2.14 -2.48 -1.58 -0.23 -1.49 -2.1 -2.37 -0.01 -0.12 0.82 -0.16 0.17 0.18 0.37 0.51 0.07 0.03 -0.17 0.44 0.52 0.39 -0.72 -0.6 -0.58 0.69 0.96 1.17 0.97 0.79 0.92
-3.8 -1.66 -5.2 - - - 0.21 - - -4.29 -1.41 0.36 0.07 0.79 -0.97 -3.76 0.34 - -1.7 -1.45 -0.65 0.82 0.76 -0.02 -2.64 0.52 0.87 0.74 2.04 1.85 1.47 0.51 1.23
-5.98 -6.0 - - - - -0.26 - - - -2.92 -0.32 1.35 -0.52 -2.27 -1.11 0.92 -0.29 -1.49 -0.24 -2.01 0.71 1.36 0.98 -0.99 0.07 0.78 0.5 1.39 1.75 1.05 1.09 1.05
-4.31 -4.5 -7.06 -6.54 -6.54 - -0.06 -8.54 -9.09 -7.72 -0.45 0.34 1.23 0.42 -0.99 0.04 -0.1 -1.21 -0.33 -0.21 -0.36 0.49 1.07 2.14 -0.6 -0.39 -0.3 0.69 1.39 1.15 0.48 -0.04 0.95
-5.63 -4.44 -6.81 -5.82 -7.05 -5.84 -0.22 -5.77 -6.07 -7.67 -0.3 0.17 1.16 0.44 -0.97 0.05 0.11 -0.33 0.11 0.11 -0.28 0.74 1.19 0.56 -0.96 0.24 0.27 0.76 1.57 1.16 0.9 -0.08 1.02
-1.15 -0.62 -1.68 -1.28 -1.93 -1.01 -0.42 -1.05 -1.6 -0.45 -0.7 0.47 0.5 0.67 -0.44 -0.59 0.38 -0.52 -0.53 -0.23 -0.27 0.6 0.52 -0.14 -0.54 -0.07 0.34 0.63 0.82 1.02 0.63 0.12 1.38
-3.13 -4.4 -5.4 -5.18 -5.99 -3.77 -0.56 -3.91 -5.03 - -0.8 0.06 0.61 0.69 -0.65 -0.59 0.61 -1.2 0.04 -0.22 -0.52 0.81 0.92 0.24 -0.35 -0.01 0.48 1.07 1.29 1.14 0.87 0.34 1.8
-2.29 -2.97 - - - -4.17 0.48 -5.42 -6.57 - -0.81 -0.02 1.02 -1.17 -2.56 -1.19 -0.88 -2.03 -1.43 -1.85 -1.54 0.78 0.6 0.75 -0.67 -1.26 -0.82 0.92 2.46 2.11 1.27 0.62 1.36
-2.18 -1.85 - -4.18 -4.78 - 0.16 -4.58 -5.17 - -1.21 -0.25 1.71 0.82 -0.12 -0.46 -0.22 -1.88 -1.99 -0.77 -1.02 1.02 0.47 1.09 -0.73 -0.25 0.1 1.36 1.42 1.01 0.9 -0.02 1.38
-0.63 -0.48 -1.13 -1.33 -0.94 -0.27 0.12 -0.46 -0.59 -0.53 -0.85 0.42 0.68 0.6 -0.97 -0.82 0.15 -0.27 -1.13 -0.89 -0.93 0.71 0.57 -0.38 -1.13 0.15 0.4 0.32 1.04 1.18 0.61 0.17 0.77
-3.56 -2.48 -3.55 -3.3 -3.2 -2.5 -0.39 -4.44 -2.43 -2.82 -0.42 0.03 1.63 0.79 -2.06 0.41 -0.07 0.47 0.03 -0.3 -0.44 -0.18 0.81 1.37 -0.68 -0.46 -0.11 0.5 0.82 1.13 0.81 0.45 1.05
-3.91 -4.05 -5.1 -8.41 -5.14 -4.35 0.19 -5.06 -6.8 - -1.32 0.03 1.55 0.55 -1.62 -1.03 1.0 -1.91 -1.43 -1.19 -1.54 1.15 1.1 0.44 -0.14 -0.42 0.4 0.43 1.54 1.65 0.74 0.44 1.27
-3.88 -2.96 -5.29 -4.47 -4.02 -5.91 0.05 - -5.16 - 0.64 0.28 0.85 1.08 -0.58 -0.17 0.9 -0.39 -1.32 -0.8 -0.39 0.81 0.88 0.2 -0.76 0.04 0.2 0.46 1.12 1.41 0.89 0.57 0.94
-2.11 -1.74 -3.07 -3.49 -4.0 -3.82 0.34 -4.45 -5.76 -3.03 -0.35 0.47 0.78 0.73 -0.46 -1.42 0.8 -0.12 -0.59 -0.65 -0.44 0.69 1.06 0.84 -0.1 -0.12 -0.06 0.44 1.23 1.5 0.64 -0.02 0.97
- - -6.04 - - - 0.06 - - -2.52 -1.17 0.23 0.75 0.7 -2.64 -0.99 0.21 -5.15 -1.67 -1.32 -1.97 0.68 1.28 0.45 -1.38 0.41 0.66 0.84 1.93 1.86 1.06 0.97 1.03
-1.98 -1.75 -4.29 -6.8 -4.99 -6.15 0.22 -3.67 -6.84 -4.28 -2.94 -0.08 0.77 0.86 -2.49 -3.02 0.16 -3.24 -3.14 -3.94 -3.62 0.93 1.17 0.5 -0.18 0.47 0.86 0.81 1.96 1.7 1.14 0.59 1.26
-6.56 -4.48 -5.81 - -4.09 -5.99 0.6 -7.74 - -2.68 -0.95 0.14 1.17 0.17 -1.66 -0.71 0.4 -1.3 0.12 -0.17 -0.68 0.86 0.91 0.56 -0.21 -0.29 -0.11 0.8 1.44 1.32 1.13 0.9 1.09
- -5.05 - -7.82 - -4.42 0.48 - -6.21 - -1.09 -0.26 0.83 -1.3 -2.62 -1.39 0.02 -1.55 0.15 -1.6 -1.1 0.06 1.01 -0.33 -1.08 -0.82 -0.26 0.94 2.12 2.09 1.5 0.58 1.87
-2.79 -1.98 -3.5 -4.46 -4.98 -5.56 -0.41 -6.96 -7.81 -5.6 -1.52 -0.13 0.92 0.14 0.15 -1.51 0.82 -1.8 -1.74 -1.13 -1.82 0.27 0.73 -0.62 -0.55 0.28 0.53 1.35 1.69 1.36 1.56 0.96 1.43
- - - - - - -0.42 - - - -1.7 -0.4 0.36 -0.56 -4.09 -1.37 0.6 -1.11 -5.12 -1.38 -1.24 1.03 0.43 0.15 -1.35 0.24 0.84 1.08 2.18 2.16 1.3 0.5 1.64
-2.92 -3.21 -2.99 -3.07 -3.02 -2.99 1.46 -3.08 -3.09 -2.79 -1.75 0.05 1.02 -0.23 -1.97 -1.18 -0.41 -1.08 -0.43 -1.41 -0.63 0.02 0.82 1.14 -0.76 0.1 0.12 0.56 1.97 1.53 0.68 0.15 1.33
-5.9 -5.76 -7.94 -7.52 -6.91 - 0.45 -6.56 -6.13 - -1.7 -0.17 0.92 -0.19 -0.93 -0.23 0.35 -2.26 -1.62 -1.28 -1.61 0.87 1.6 0.89 0.1 -0.12 0.09 0.81 1.4 1.66 0.89 0.72 1.49
-2.15 -1.63 -3.91 -3.37 -2.73 -3.94 0.38 -2.94 -3.66 -3.7 -2.13 0.25 1.9 1.16 -2.87 -2.58 -0.44 -2.27 -2.05 -2.38 -2.59 1.04 0.76 1.44 -0.68 -0.63 -0.09 0.5 1.79 1.47 0.66 0.15 1.18
-1.26 -1.01 -1.47 -1.31 -1.49 -1.71 0.59 -1.81 -1.2 -1.86 -0.37 0.12 0.51 0.54 -0.99 -0.68 0.46 -0.53 -0.75 -0.75 -0.84 0.31 0.57 1.12 -0.6 -0.34 -0.25 0.72 1.1 1.13 0.88 0.47 1.06
-6.3 -3.06 -4.55 - -4.94 - 0.04 - - - -2.02 -0.15 1.17 -2.23 -2.64 0.27 -1.27 - -0.86 -1.15 -1.29 0.39 0.72 0.73 -2.19 -1.94 -1.47 1.13 2.51 2.0 1.25 1.02 1.69
-2.3 -2.6 -5.3 -5.22 -4.91 -6.51 -0.2 -5.29 -5.49 -3.4 -0.29 -0.12 1.1 0.66 -0.27 -0.03 0.1 -0.28 -0.19 -0.15 0.25 0.36 1.04 0.83 -1.46 0.01 0.18 0.74 1.43 1.24 0.89 0.39 0.91
-5.47 -4.69 -6.07 -5.76 -5.96 - -0.68 -6.3 -8.44 - 0.34 0.37 0.93 0.24 0.04 -0.5 0.4 0.4 0.04 -0.06 0.5 0.31 0.36 0.04 -0.24 -0.41 -0.06 0.83 1.15 1.19 0.86 1.13 1.3
-2.74 -1.39 -3.33 -3.36 -4.15 -2.36 0.6 -2.73 -3.58 -3.58 -1.32 0.53 0.62 -0.23 -0.46 -1.69 0.37 -2.14 -1.34 -1.66 -1.2 0.51 1.0 0.21 -0.6 0.45 0.71 0.27 1.71 1.92 1.19 0.6 0.96
-3.95 -6.78 -6.5 - - - 0.3 - - - -2.26 -0.73 1.09 -0.27 -0.45 -2.06 0.72 -4.9 -1.0 -1.07 -0.72 0.2 0.6 0.55 -0.94 -0.02 0.44 1.18 2.0 1.84 1.2 0.94 1.39
-4.77 -5.33 -5.64 -5.3 -5.54 - -0.18 - - - -0.82 0.2 1.17 -0.51 -1.28 -0.66 -0.03 -0.65 0.04 -0.17 -0.34 0.94 1.16 1.15 -0.47 -0.24 0.2 0.85 1.42 1.3 1.13 0.61 1.14
-0.91 -0.7 -2.01 -1.72 -1.84 -1.27 0.04 -1.16 -1.72 -1.58 -1.11 0.54 0.35 -0.51 -0.49 -1.1 0.12 -0.63 -1.23 -0.77 -0.73 0.44 0.97 0.69 0.11 0.29 0.31 0.65 1.29 1.18 0.79 0.31 1.22
-4.67 -2.67 -6.53 -4.38 -4.15 - 0.97 - - - -4.92 -0.27 1.95 -0.26 -2.15 -1.59 0.05 -4.89 -0.35 -2.25 -4.02 0.95 0.62 1.28 -2.12 -0.49 0.14 0.65 1.98 1.78 0.6 -0.71 1.79
-5.0 -5.76 -5.55 -6.92 -8.58 - 0.54 -4.77 -6.11 -6.57 -2.46 0.35 0.87 -0.09 -1.55 -1.88 0.5 -2.22 -1.33 -1.39 -1.54 0.77 0.88 0.48 -0.13 0.39 0.88 0.37 1.84 1.93 1.28 0.72 1.04
-3.66 -3.49 -5.09 -4.46 -6.69 -5.01 0.48 -3.99 -5.01 -5.69 -2.29 0.57 0.71 0.57 -0.27 -1.29 0.38 -0.22 -1.03 -0.91 -1.53 0.71 0.76 0.2 -0.78 0.82 0.96 0.07 1.63 1.78 1.09 0.44 0.85
-0.8 -0.61 -1.44 -1.42 -1.15 -0.99 0.21 -0.93 -0.69 -1.13 -0.09 0.31 0.23 0.27 -1.1 -0.16 0.0 0.02 -0.56 -0.17 -0.21 0.39 0.53 0.24 -0.28 -0.06 0.01 0.36 1.06 1.07 0.62 0.48 0.87
-2.6 -1.48 -3.73 -3.14 -2.12 -2.56 0.65 -2.47 -3.21 -3.02 -0.18 -0.09 0.77 1.15 -4.21 -0.35 0.57 -1.55 -0.69 -0.69 -0.09 0.53 0.84 0.48 -0.68 -0.37 0.21 0.81 1.45 1.16 0.95 0.48 1.06
-3.57 -2.43 -4.42 -7.23 -4.02 -4.3 -0.23 -4.53 -3.92 -3.2 0.08 -0.05 1.69 -0.35 -0.49 0.09 -0.31 -0.85 -0.57 0.01 0.09 0.9 1.01 -0.67 -0.74 0.51 0.19 0.38 1.23 1.38 1.1 0.75 0.87
-2.28 -2.45 -3.28 -5.52 -4.24 -8.34 -0.14 -3.53 -3.34 -3.65 -0.49 -0.42 1.6 0.18 0.05 0.28 -0.4 -0.53 -0.19 -0.13 -0.3 0.67 0.79 1.43 -1.05 -0.43 -0.3 0.49 1.26 1.24 1.08 0.3 0.83
-4.24 -3.05 -4.61 -8.49 -5.17 -4.84 0.11 - - -4.15 -1.77 0.52 0.5 -0.31 -1.61 -0.82 1.12 -2.38 -1.93 -0.92 -0.52 0.58 0.8 -1.71 -0.38 0.65 1.05 0.54 1.84 2.05 0.68 0.4 1.49
-3.36 -6.03 -4.43 - - - 0.15 -5.5 -6.1 - -0.94 -0.11 1.23 0.35 -2.69 -1.61 0.41 -0.12 -1.63 -0.2 -0.67 1.1 1.2 -0.99 -0.8 0.63 0.84 0.64 1.77 1.38 1.0 0.14 1.34
-4.73 -5.19 -5.98 - - - -0.61 -2.11 -3.2 - -1.93 -0.2 1.62 0.54 -0.48 -1.04 0.27 -1.77 -3.69 -2.16 -1.47 1.0 1.21 2.03 -2.45 -0.38 -0.14 0.61 1.48 1.28 0.95 0.52 1.35
-2.42 -2.96 -3.49 -5.29 -5.53 - 1.1 -5.45 -4.84 -3.35 -1.25 0.13 1.25 -0.3 -2.0 -1.49 -0.14 -1.58 -1.11 -1.4 -0.95 0.77 0.85 0.93 -0.65 -0.73 -0.57 0.73 2.13 1.68 1.02 -0.39 1.57
-3.34 -3.91 -4.56 -5.2 -4.3 -3.53 -0.52 -3.98 -3.63 -4.0 -0.59 -0.07 1.2 0.16 -1.68 0.1 0.16 -0.08 -0.12 -0.02 -0.07 -0.14 0.91 0.78 -0.56 -0.1 0.24 0.76 1.22 1.38 1.12 0.68 1.42
-1.71 -0.95 -4.66 -4.55 -3.13 -3.36 -0.3 -2.48 -2.58 -2.46 -1.13 0.14 1.38 0.57 -2.81 -1.48 0.62 -1.68 -1.22 -1.24 -1.55 1.04 0.54 0.71 -1.31 -0.17 0.24 0.68 1.82 1.62 0.88 0.4 1.24
-1.86 -2.39 -3.65 - -3.48 -3.98 -0.32 -4.59 -4.11 -4.25 -2.24 -0.39 1.35 -0.32 -0.85 -2.17 0.25 -1.12 -1.23 -2.18 -2.77 0.48 0.97 1.64 -2.28 -0.04 0.12 1.31 1.86 1.3 1.06 0.51 1.59
-3.85 -3.91 -4.58 -7.61 -5.36 - -1.15 - -4.97 -5.04 -2.98 -0.72 0.29 -0.07 0.24 -1.57 0.9 -1.44 -1.83 -1.83 -2.51 -0.47 0.21 -1.52 -0.88 0.09 0.4 1.64 1.96 1.62 1.86 1.44 1.73
-2.37 -2.51 -5.33 -2.73 -4.27 - 0.71 -4.51 - - -0.73 -0.31 0.64 -0.62 -0.41 -1.16 0.46 -2.26 -1.99 -1.51 -1.14 0.45 0.28 0.33 -0.92 0.11 0.54 1.01 2.04 1.94 1.19 0.71 1.31
-5.31 -4.81 - - -7.07 - 0.77 -3.28 -7.23 - -2.12 -0.4 1.89 0.2 -1.57 -2.21 0.16 -2.05 -1.39 -1.01 -1.89 0.77 0.64 1.74 -1.98 -0.47 -0.04 0.69 1.88 1.49 0.79 0.71 1.14
-3.58 -3.22 - -5.57 - -5.0 -0.33 - - -3.3 -1.98 -0.23 1.19 0.34 -0.7 -1.5 0.05 -0.04 -1.73 -2.38 -1.03 0.6 1.18 2.15 -1.83 0.34 0.38 0.79 1.36 1.05 0.92 0.62 1.25
-0.94 -1.43 -1.96 -1.9 -2.05 -1.53 0.34 -1.95 -1.91 -1.94 -1.16 0.53 0.32 0.55 -1.36 -1.12 0.17 -0.93 -1.82 -1.76 -1.81 1.08 1.22 1.09 0.46 -0.15 0.19 0.67 1.05 1.14 0.85 0.49 0.93
-1.3 -1.25 -2.51 -3.95 -4.34 - 0.04 -3.86 -3.62 -5.95 -1.81 0.17 0.69 0.53 -3.75 -2.61 0.3 -1.94 -1.32 -2.43 -1.54 0.91 1.06 0.66 0.38 0.1 0.33 0.82 1.5 1.45 1.21 1.04 1.42
-1.19 -1.24 -3.4 -4.39 -3.72 -2.82 0.73 -4.44 -2.94 -3.03 -1.13 0.52 1.28 0.56 -1.61 -0.76 0.7 -1.07 -1.02 -0.95 -0.8 0.8 0.9 -0.06 -0.59 0.45 0.72 0.18 1.57 1.51 0.32 -0.11 1.04
-1.27 -1.1 -1.08 -1.1 -1.11 -0.49 0.24 -1.28 -1.48 -0.86 0.07 -0.13 0.6 -0.3 0.19 -1.01 0.25 0.38 0.01 -0.21 0.02 0.34 0.02 0.51 -0.14 -0.37 -0.35 0.8 0.94 0.82 0.66 0.46 0.73
-8.1 -9.19 - - -8.06 - -0.2 - - -6.82 -0.54 0.1 1.43 0.86 -0.99 0.03 0.15 -0.79 0.55 0.37 0.44 0.68 1.04 0.59 -1.68 -0.05 0.08 0.59 1.4 1.13 0.96 0.08 0.75
-5.22 -1.39 -4.67 - -5.2 - 0.13 -3.61 -6.34 -1.58 -1.08 0.38 1.48 0.19 -2.75 -0.73 -1.49 -1.94 -1.28 -1.11 -1.5 0.56 0.65 1.22 -1.6 -1.07 -0.91 0.58 2.08 2.01 1.04 0.58 1.42
-3.17 -2.41 -5.0 -3.68 -3.84 -4.51 0.32 -4.43 -4.31 -2.07 -1.41 0.47 0.21 0.57 -0.39 -1.7 0.2 -1.49 -1.08 -0.91 -1.22 0.87 1.15 0.8 -0.87 0.07 0.28 0.85 1.81 1.5 0.88 0.36 1.4
-1.22 -0.88 -0.95 -1.63 -0.6 -0.62 0.42 -1.4 -1.19 -1.61 -0.05 0.34 0.26 0.35 -0.61 -0.44 -0.12 -0.17 -0.29 -0.51 -0.3 0.17 0.64 0.43 -0.33 -0.27 -0.15 0.62 0.98 1.08 0.67 0.43 1.03
-5.96 -6.44 - - -3.75 - 0.36 - - - -1.61 -0.25 1.77 0.81 -1.3 -0.89 0.44 -4.82 -0.53 -1.81 0.33 0.36 1.31 1.11 -1.68 -0.52 0.12 0.93 1.63 1.49 0.73 0.43 0.9
- -3.63 -4.3 - - - -0.41 - - - -2.74 0.15 1.32 0.13 - -1.99 -2.0 - -2.07 -2.14 - 1.1 0.72 1.0 -2.0 -1.51 -1.07 1.45 2.5 2.16 0.97 0.47 1.67

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.