Heatmap: Cluster_42 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-6.08 -4.2 -4.84 -6.08 -5.37 - 0.54 -6.23 - -5.81 2.33 -0.27 -2.0 0.0 -0.51 1.92 -1.9 2.36 2.08 1.52 2.03 -1.63 0.37 -4.63 -0.15 -3.1 -1.97 -3.5 - - -2.67 -5.75 -
-6.75 - -4.12 -5.16 -7.35 - -6.03 - - - 2.16 - - - - 3.1 -4.2 2.9 2.47 0.85 2.32 -6.11 - - - - - - - - - - -
-5.07 -5.18 -7.44 -6.88 -8.27 -6.59 -6.62 - -7.4 - 2.34 -2.55 -1.48 -1.64 1.45 2.89 -1.83 2.18 2.13 1.46 1.86 -3.55 -2.72 -6.42 -1.05 -2.34 -2.17 -8.19 -5.28 -5.2 -6.51 -7.78 -4.93
- -10.26 - - -10.63 - - - -8.47 - 1.58 -5.46 -5.02 -4.76 -0.39 3.07 -6.37 2.84 2.77 0.6 2.27 -4.32 - -5.71 -8.42 -8.33 -3.31 -5.76 - -6.53 -4.37 -2.79 -
-9.39 -5.34 -8.28 -9.1 -6.98 -8.02 -10.2 -4.04 -5.51 -5.54 1.64 -5.6 -5.59 -3.87 -0.27 3.33 -6.45 2.57 2.65 0.6 2.26 -5.14 - -6.97 - -9.27 -4.04 -7.15 -9.2 -7.87 -4.78 -4.48 -
- - - -6.68 -5.89 - - - -7.8 - 2.34 -2.82 0.26 - 2.36 2.2 -0.75 2.18 1.52 1.38 1.28 -0.64 - -0.67 0.59 -1.19 -1.07 -5.47 - - -4.56 -5.92 -
- -8.21 -6.54 -7.0 -7.43 -6.03 -10.77 -5.31 -6.03 -5.93 1.74 -5.23 -6.13 -4.08 -0.43 3.38 -5.97 2.62 2.6 0.57 2.13 -5.39 - -7.68 - -8.19 -2.82 -7.94 - -7.76 -6.47 -4.7 -
-4.59 -5.23 -6.71 -8.19 -8.56 - -5.33 - - - 2.79 -6.41 -3.23 -3.9 2.09 2.54 -1.49 2.38 1.65 1.57 1.71 -7.39 - -4.15 -2.42 -2.54 -2.76 -5.58 -3.9 -3.96 -4.34 -4.93 -6.34
- - -9.72 - - - - - - - 2.59 -4.5 -5.19 -3.87 2.09 2.84 -1.62 1.95 2.03 1.82 1.61 -8.13 - -3.59 -2.63 -3.37 -3.52 -5.81 -5.19 -5.45 -5.61 -5.87 -6.58
-6.11 -5.25 -7.93 - -8.57 - -6.46 - - - 1.97 -3.41 -0.92 -3.82 0.37 3.08 -3.33 1.93 2.48 0.66 2.29 -5.75 - - -0.36 -3.14 -2.36 -3.96 -2.03 -0.97 -2.62 -3.3 -1.28
- -8.17 - -8.15 -7.68 - - - - - 1.67 -2.47 -0.21 -2.56 0.65 3.29 -2.94 1.67 2.16 0.44 2.08 -3.6 -3.91 -4.3 0.31 -0.74 -0.98 -3.43 -1.62 -1.38 -3.37 -3.13 -1.59
- -7.79 - - -5.26 - - -4.97 - - 2.7 - 0.36 -1.9 2.46 1.65 -0.3 1.69 2.26 1.0 2.13 - -6.24 - 0.05 - - - - - - - -
-2.56 -1.92 -6.68 -7.06 -9.81 -4.93 -3.95 -1.89 -5.97 0.01 1.95 -0.68 -0.41 -3.78 0.94 2.57 -2.72 2.4 1.82 0.9 2.08 -0.55 - -3.92 0.68 -2.2 -1.66 -8.44 -7.34 -6.85 -6.79 -7.18 -8.35
-4.86 -4.09 -4.39 -2.74 -3.25 -3.78 -1.58 -3.22 -4.45 -1.46 1.94 0.69 0.02 -1.62 1.02 2.26 -0.3 1.86 2.04 1.83 1.86 -0.62 - -2.88 0.62 -7.79 -5.91 - - - - - -
- -11.92 - - - - -10.14 - - - 2.19 -5.46 0.76 -6.21 2.44 2.12 -0.8 1.82 2.23 1.1 2.04 -6.54 -3.05 -10.37 0.61 -3.79 -3.07 - - - - - -
- - - - -7.13 - - - - - 2.68 - -0.6 - 0.55 2.86 -2.12 2.59 1.99 1.26 1.95 -5.9 - - -0.88 -4.24 -3.62 - - -5.35 - - -
-5.21 -4.88 - -4.89 -9.13 -6.9 -5.73 -4.84 -6.7 -7.79 2.28 -1.45 0.67 -1.37 1.93 2.73 -0.98 1.36 1.75 1.28 1.36 -1.08 -2.42 -4.13 0.83 -1.66 -0.89 -5.0 -3.16 -3.55 -4.75 - -3.11
- - - - - - - - - - 2.64 - -0.96 - - 2.73 - 1.51 3.3 2.11 1.38 - - - - - - - - - - - -
- - - - - - - - - - 2.51 -7.46 -7.37 -4.13 -6.87 3.06 -3.06 2.71 2.33 1.72 1.93 -8.97 -4.53 -4.25 -7.83 -8.61 -9.72 -10.54 -8.99 -7.71 - - -
- - - - - - - - - - 2.48 - -0.61 -3.57 1.48 2.67 -0.84 1.72 2.32 2.29 1.5 -4.7 - - -0.29 -5.17 -4.72 - - - - - -
- - - - -7.49 -5.98 - -6.62 -5.78 - 2.58 -5.78 -0.67 -5.77 1.48 2.57 -1.03 1.86 2.19 1.94 1.97 -5.17 -5.89 - -0.24 -4.1 -2.34 - - - - - -
-3.9 -5.74 -4.31 -4.81 -6.0 -4.88 -2.92 -5.19 -4.66 -7.18 2.65 -4.43 - -2.28 1.78 2.13 -2.37 1.99 2.37 2.02 2.07 -3.57 -2.96 -4.41 -3.01 -3.73 -3.68 -5.03 -7.87 - -6.61 -5.5 -5.69
-5.48 - -5.94 -6.16 -6.2 - -3.5 - -6.79 - 2.59 -3.38 - -4.05 1.56 2.33 -2.68 1.7 2.53 2.33 1.96 -4.55 -3.5 -4.63 -2.76 -3.36 -4.81 -3.89 -6.21 - -5.44 -5.3 -
-8.41 - - -8.06 -6.55 - -4.93 -4.69 -6.85 -4.74 2.26 0.39 0.31 -1.21 0.58 3.01 -1.55 1.49 1.99 0.98 1.48 -1.11 -3.18 -5.95 0.67 -1.3 -0.9 -4.19 -3.8 -3.69 -4.0 -3.66 -2.28
-4.96 -5.5 -4.37 - - - - -4.17 - -6.94 2.35 -1.76 -1.56 -2.52 1.7 2.8 -1.66 2.3 1.86 1.51 2.05 -2.6 -4.96 - -1.28 -3.22 -4.11 - -3.76 -6.84 - - -5.78
-2.09 -1.82 -3.71 -4.14 -4.14 -3.71 -4.14 -4.22 -3.62 -4.37 1.94 -1.29 0.55 -2.06 1.57 2.31 -0.99 1.73 1.79 1.55 1.42 -0.76 -2.39 -3.87 1.21 -1.28 -0.16 -3.86 -2.36 -2.6 -3.73 -4.91 -2.35
- - - - - - - - - - 2.64 - - - - 2.82 -9.77 1.98 2.55 2.76 1.67 - - - - - - - - - - - -
- - - - - - - - - - 2.16 -6.01 0.14 - 0.29 2.65 -0.25 1.88 2.06 2.56 1.86 -3.29 -2.22 - -0.38 -4.29 -2.43 -5.14 -2.98 -3.24 - -4.18 -3.79
-3.58 -4.01 - - - - -4.53 - - -3.32 2.36 -4.51 -0.13 - 0.86 3.04 -2.19 1.8 2.23 1.45 1.86 -5.44 -2.63 - -0.15 -2.19 -1.76 - -5.63 -4.63 -3.93 -3.43 -4.49
-4.14 -2.23 -5.03 -5.49 -5.84 -4.67 -1.8 -4.23 -3.06 -3.17 2.1 0.29 0.21 -1.0 1.0 3.0 -0.82 1.07 2.11 0.87 1.58 -0.77 - -4.72 1.03 -5.58 -1.38 - - - - - -
- - - - - - - - - - 1.67 -2.7 0.24 -4.37 1.3 2.92 -2.01 2.58 2.09 1.0 1.94 -3.72 -3.35 -5.94 0.19 -2.24 -1.89 -4.74 -4.8 -5.4 -3.63 -4.68 -6.03
- -7.46 - - -9.49 -7.36 -5.73 -6.15 -7.16 -7.0 1.92 0.81 1.13 -3.69 0.67 2.96 -2.28 1.27 1.92 1.57 1.94 -0.78 -2.75 -2.62 0.55 -4.54 -3.33 -7.05 -6.38 -5.28 -7.74 -7.25 -5.49
- -2.75 - - - - -3.39 -2.61 -3.56 -3.99 2.4 - - 0.09 1.63 2.26 -1.39 1.9 1.38 2.95 1.8 - - - - -2.84 -2.39 - - - - - -
- - - - -8.14 - -5.77 - - - 1.98 -4.2 -0.52 -5.93 1.92 2.57 -0.53 2.32 1.9 0.36 1.91 -1.55 -6.06 -3.68 -0.15 -1.79 -1.66 -1.45 -2.2 -2.26 -1.41 -0.46 -1.87
- - - - -7.16 - - - - - 2.3 -0.34 0.9 0.74 2.5 1.78 -1.0 1.44 1.39 1.11 1.22 -1.84 0.25 -1.65 0.82 -2.25 -2.03 -6.05 - -5.84 - -5.78 -1.95
-4.32 -4.55 -7.05 - -6.24 - - - -6.45 - 2.49 -3.21 -2.44 -2.2 1.4 2.81 -1.2 2.2 1.78 1.57 1.71 -3.19 - - -1.03 -0.73 -0.5 -5.53 -2.34 -2.86 - -4.51 -2.9
-1.34 - - - - - - - - - 2.02 - - - -2.07 3.43 -6.31 2.29 2.49 0.84 2.36 - - - - - -2.98 - - - - - -
- -2.19 - - - - - -5.39 - - 2.25 -5.54 0.33 -3.54 1.12 2.21 -1.26 2.46 1.95 0.65 2.09 -3.39 -1.13 - 0.52 -2.25 -1.23 -1.45 -3.03 -3.94 -1.62 -1.03 -2.24
- - - - - - -6.27 - - - 1.99 -2.42 -1.35 -1.31 1.53 2.94 -0.67 2.0 2.2 1.57 1.91 -2.16 -5.34 - -0.93 -2.18 -1.84 -6.54 -3.1 -3.97 - - -3.86
- - - - - - - - - - 1.76 -2.96 0.3 -3.69 0.53 2.69 -1.76 2.32 2.38 1.6 2.08 - -1.7 - 0.22 -2.37 -2.37 -3.07 -3.52 -3.01 -3.26 -4.58 -2.42
- - -3.27 - -2.41 - - - -3.08 - -0.25 - 0.35 - -1.14 3.19 -3.22 2.1 2.68 1.22 2.25 - - - 1.47 - - - - - - - -2.09
- - - - - - - - - - 2.42 - -0.96 -1.01 -0.16 2.91 -1.74 2.76 1.52 1.89 1.56 - -3.46 - -1.49 - - -4.41 -1.42 -1.23 - -4.16 -1.73
- - -6.75 - - - -6.25 - -5.22 - 2.32 - 1.18 - 0.83 2.71 -1.55 1.59 2.61 1.03 2.01 - - - 0.9 - - - - - - - -
- - - - - - - - - - 1.97 0.81 -0.24 0.55 0.96 2.18 -0.37 2.3 1.71 1.98 1.95 -1.11 - -5.7 -0.83 -1.93 -1.46 -6.77 -6.47 - - -7.61 -5.43
- - - - - - - - - - 2.32 -5.38 0.44 - 1.02 2.77 -1.79 1.83 2.46 1.28 2.07 - - - 0.85 - - - - - - - -
- - - - - - -4.93 - - - 2.06 -1.71 0.84 - 1.22 3.27 -1.64 1.64 1.75 0.91 1.86 -0.9 - - 0.37 -2.0 -2.01 - -4.89 -4.83 -4.96 - -
- - - - - - - - - - 2.46 -0.04 - - - 3.15 -1.22 3.08 2.12 1.45 -0.1 -0.44 - - - -4.23 - - - - - - -
- - - - - - -9.39 - - - 2.43 -6.99 -2.11 -7.78 2.31 2.97 -1.11 2.03 1.97 1.22 1.88 -9.46 -6.42 -8.62 -4.22 -8.03 -8.49 - - - - - -
- - -8.17 - -7.33 - -5.65 - - - 1.97 -2.81 -0.89 -3.44 0.81 2.58 -3.57 2.18 2.14 1.15 2.09 -6.54 - -6.86 -0.64 -2.63 -3.04 -1.89 -0.66 0.64 -1.44 -1.32 -0.18
- - - - - - - - - - 2.55 -8.9 -6.97 -6.3 -8.89 3.18 -3.38 2.81 2.33 1.31 1.74 - -4.51 -4.46 -7.85 -8.69 -12.31 - - - - - -
-4.99 -5.94 -6.52 -7.76 -8.3 - -3.57 - - - 2.31 -3.4 -3.15 - 1.97 2.67 -2.83 2.33 1.68 1.26 1.27 - - -0.84 -1.77 -2.12 -1.77 -0.69 -1.84 -1.07 -0.64 -1.03 -1.54
-4.35 -2.9 -7.22 -6.93 -6.52 -6.75 -0.59 -10.89 -8.21 -8.0 2.2 0.22 -0.13 -0.07 0.85 1.99 -0.69 2.07 1.71 1.48 1.55 -0.11 0.7 -0.94 -0.34 -1.99 -1.54 -4.06 -3.14 -3.64 -3.96 -4.51 -3.19
- - - - - - - -3.8 - - 2.44 - - - - 3.29 -4.04 2.51 2.49 0.3 2.34 - - - - -8.19 - - - - - - -
-4.64 - - - -6.21 - - -3.74 -3.53 - 2.87 - -4.65 - 2.06 2.54 -0.84 2.54 1.68 1.28 1.78 - - - - -8.25 - - - - - - -
- - - - - - - -3.66 - - 1.3 -3.82 -0.08 - 1.0 2.75 -3.84 1.02 2.47 1.06 2.4 -4.74 -2.93 - 0.18 -2.45 -3.02 -2.5 -0.55 0.26 -1.31 -1.59 0.38
- - -6.82 -8.08 -5.78 - - -1.89 -2.64 -2.75 2.03 -1.97 0.32 -3.04 0.8 2.7 -1.34 2.13 2.1 1.26 1.89 -1.74 -3.01 -6.55 1.19 -2.52 -2.39 -6.8 -4.53 -4.33 -5.57 -5.26 -5.36
-4.79 -3.89 -7.91 -9.11 -7.42 - -0.5 -8.18 - -6.62 1.98 0.5 -0.01 0.6 0.39 1.93 -0.71 1.85 1.69 1.63 1.49 0.56 1.11 -0.71 -0.85 -1.52 -1.14 -6.69 -3.99 -4.45 -5.66 -5.13 -3.43
-1.4 -3.28 -2.0 -3.8 -3.44 - -1.68 -6.39 -3.78 -5.27 2.71 - -4.17 - 1.98 2.12 -2.51 1.51 1.84 2.33 2.18 -3.21 - - -3.05 -3.05 -3.8 -3.86 - - -4.37 -5.04 -3.99
- - - - - - - - - - 2.6 - -1.74 -4.24 1.15 2.53 -3.06 2.51 2.28 1.09 1.94 - -1.3 -1.83 0.25 -4.81 -4.64 - -6.08 - - - -
- -7.19 - - -8.71 - -7.29 - - - 2.55 - -0.92 -6.27 1.99 2.56 -1.67 1.69 2.42 1.83 1.87 -5.09 -4.81 - -1.01 -7.43 -7.0 -7.59 - -7.27 - -7.3 -
- - - - - - -9.92 - - - 2.61 -7.2 -2.79 -7.57 2.17 2.92 -1.49 2.27 2.06 1.0 1.7 - -7.43 -9.56 -4.46 -8.34 -8.08 - - - -12.11 - -
- - - - - - -11.19 - - - 2.39 -6.71 -2.87 -10.16 2.22 2.86 -1.39 2.18 2.11 1.4 1.91 - -6.48 -9.09 -4.75 -8.1 -7.39 - - - -10.38 - -
-5.73 -3.93 - - - - -3.37 -5.57 - -3.2 1.85 -0.27 -0.01 - 1.17 2.33 -1.38 2.76 1.83 1.31 1.47 -0.85 -4.78 -3.58 1.1 -1.83 -1.04 -4.44 -3.24 -3.21 -4.78 -3.8 -4.29
- - -2.86 -3.11 - -2.54 - - - - 1.08 - -2.41 - 2.12 3.4 -2.58 2.67 1.6 1.22 1.65 - - - - -3.4 -1.87 - - - - - -
- - - - - - - - - - 2.5 - -1.27 -4.37 -3.04 2.52 -5.25 0.41 2.79 2.7 2.59 - - - -2.01 - -8.81 - - - - - -
-5.69 -4.26 -5.68 -9.81 -7.58 -6.98 0.88 -8.46 - -7.27 2.36 -3.03 -2.69 -0.65 -6.99 2.69 -1.68 2.61 2.25 1.38 1.95 -4.12 -3.28 - -1.95 -2.09 -2.03 -8.92 - -10.2 -7.36 -10.32 -
- - - - - - - -3.28 - - 1.42 -0.73 1.13 - 0.33 3.26 -2.97 0.82 2.05 1.12 2.34 -1.66 - - 0.56 -1.82 -1.32 -3.75 - -2.49 -2.35 -2.29 -2.37
- - - - -2.96 - - - - - 2.37 - - - 2.38 2.61 -1.72 1.57 -0.65 2.79 2.48 - - - - - - - - - - - -
- - - - - - -9.96 - - - 2.45 -4.8 0.38 -5.09 2.26 2.53 -1.0 2.07 2.06 0.92 1.78 -4.94 -2.86 -8.18 -0.23 -3.08 -2.49 -9.94 -7.2 -7.09 -10.3 -6.99 -10.33
- - - - - - - - - - 3.07 - -2.37 - 1.83 1.79 -0.64 2.2 2.2 2.21 1.5 - - - -2.84 - - - - - - - -
- - - - - - - - - - 2.08 -2.21 0.62 - 0.13 3.2 -1.76 1.27 2.07 1.17 2.33 - -3.32 - 0.16 -1.34 -0.37 -4.28 -3.22 - - - -4.1
-2.76 - -4.38 -4.63 -7.29 - -2.72 - - - 2.73 -1.39 -2.02 -4.84 1.22 2.75 -3.1 2.5 1.63 1.5 1.91 - - - -2.49 -6.98 - -1.97 -3.28 -4.8 -3.08 -4.33 -4.82
-9.29 -6.33 -5.51 - - - 0.2 - - - 2.48 -2.56 -1.49 -0.16 - 2.77 -2.9 2.59 2.05 1.36 2.03 -3.31 -6.68 - -0.86 -3.23 -2.19 - - - -6.45 -7.72 -
-0.25 -5.27 -0.48 -0.72 -2.71 -4.38 -3.84 - - - 2.4 - -5.9 - - 3.06 -3.74 2.89 1.76 0.6 2.08 - -1.85 - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.