Heatmap: Cluster_241 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - -4.37 - -2.15 - - - 2.4 -1.39 1.07 -0.71 -1.71 0.85 0.72 1.01 1.85 1.84 1.04 -3.81 -1.51 -2.96 0.03 -0.43 0.37 -0.11 -0.42 0.62 -1.5 -1.92 0.94
-2.82 -2.16 -4.45 -4.71 - - -1.84 - -5.51 - 0.55 -1.34 -1.98 - -2.92 0.66 -0.67 -0.84 0.22 0.16 1.16 - - - -2.88 0.05 0.31 2.19 1.14 0.82 1.7 2.18 2.01
-4.71 - -2.93 -6.57 -6.11 -5.07 -5.88 -5.64 -4.54 - 1.67 - - -0.99 -0.99 1.81 -1.07 2.07 1.04 0.71 0.3 -3.31 -4.99 -1.84 -4.83 -2.89 -3.15 1.26 1.72 1.21 0.91 0.22 1.87
-1.47 -1.25 -2.74 -2.82 -2.91 -2.26 0.13 -3.05 -2.96 -3.02 1.28 -2.69 -0.68 -1.65 -0.54 0.5 -0.78 1.48 1.47 0.9 1.42 -2.36 -3.18 -2.97 -0.11 -1.57 -0.74 1.26 0.2 0.22 1.61 1.58 -0.35
-3.25 -3.63 -3.13 -3.73 -5.08 -1.87 -2.28 -6.32 -3.04 -4.84 2.55 -0.22 0.49 -4.41 -1.95 0.22 0.23 0.99 1.56 1.48 0.72 -2.11 -0.75 -4.66 -0.01 -1.12 -0.57 0.2 0.78 0.54 0.2 0.43 1.0
-4.89 -2.99 -4.66 -5.64 - - 0.14 -4.3 -7.93 -2.04 1.33 -0.64 -3.38 -2.39 -2.03 0.01 -1.26 1.44 1.41 1.16 1.57 -3.09 -4.21 -3.58 -1.64 -2.54 -2.35 0.56 0.2 1.09 1.28 1.25 2.38
-4.01 -2.55 -4.85 -2.15 -1.45 -5.21 0.61 -5.85 -3.92 - 0.19 -0.55 -2.5 -2.68 -0.25 0.69 -1.31 -0.47 0.46 0.46 0.91 -1.85 -4.13 - -2.64 -0.47 -0.15 1.56 1.22 1.31 1.51 1.53 2.18
-1.82 -4.88 -1.57 -2.38 -2.06 -1.76 -1.01 -5.36 - -4.04 1.85 -2.0 0.56 -1.52 1.6 2.32 1.17 0.64 1.92 1.69 1.94 -0.2 -3.41 -5.4 0.09 -5.78 -1.58 -4.81 -6.68 -5.62 -4.89 -2.9 -4.41
-1.07 -0.9 -1.12 -1.09 -0.98 -0.55 0.19 -0.75 -0.85 -0.75 0.64 0.92 -0.65 0.07 0.86 -0.35 -0.2 0.33 0.45 -0.06 0.6 -0.51 -0.94 -0.91 -0.35 0.16 0.14 0.25 0.44 0.73 0.13 0.24 1.01
- - -7.67 -5.04 -4.97 -4.26 -4.41 -2.6 -3.48 -2.02 1.18 -0.12 -4.24 -0.34 -0.26 1.62 -1.18 1.52 1.42 1.27 1.46 -4.8 -4.22 - -2.67 0.79 0.44 -0.16 0.45 1.23 0.36 0.05 1.57
- - - - - - -1.45 -7.86 - - 1.79 -0.67 -0.77 -1.34 -1.25 2.26 0.45 1.46 1.31 0.16 1.39 -1.12 0.31 -1.27 0.51 -1.4 -1.37 -0.48 0.76 1.12 -1.17 -1.2 1.17
- - - - - - - - - - 2.42 -1.6 0.03 -2.59 - -0.1 -0.26 -0.2 -0.62 0.64 -0.33 0.01 0.99 -1.85 0.61 -2.05 -2.49 0.17 0.75 1.77 0.35 0.78 2.61
- - - - - - - - - - 1.76 -1.24 -2.8 -1.23 1.09 2.98 0.78 1.08 1.71 1.98 1.71 -2.39 1.88 - -3.0 -5.63 -2.71 -4.97 - -5.0 - -5.2 -
-3.16 -2.65 -5.9 -6.1 -7.25 -6.23 -1.36 -8.76 -11.2 -6.78 1.87 -2.34 -1.32 -4.02 -0.51 0.13 -0.8 1.58 1.38 1.66 1.41 -3.37 -0.66 -1.39 -1.85 -2.68 -3.76 0.82 0.44 0.01 1.75 1.89 0.45
- - - -1.02 -2.72 - 0.15 - - -1.03 - - -1.49 - - - 0.61 - - -0.5 - -1.34 - 1.34 -0.37 -1.21 0.4 2.18 0.57 1.72 1.13 2.53 2.44
- - -3.8 -3.52 -4.45 -3.33 -0.32 - -2.29 -4.82 -1.07 0.38 -0.69 -1.2 -3.19 -1.28 -0.17 -1.54 -1.23 -1.29 -1.26 -0.72 -3.32 1.55 0.3 -0.32 0.51 1.83 0.29 1.4 0.93 2.02 2.42
-7.77 -6.0 - - -7.0 - -6.74 - -8.11 - 2.1 -0.95 -1.46 -1.38 -2.61 1.67 0.84 1.26 1.34 1.23 1.11 -2.11 0.06 -1.28 0.62 -1.06 -1.04 -1.11 0.79 1.23 -1.43 -1.61 1.76
- - -5.05 - -8.04 - -4.18 -6.65 -3.33 -2.7 1.83 - - -4.73 0.97 1.0 -0.41 1.7 1.56 1.55 1.0 - -3.15 - - -1.14 -1.16 1.36 -0.65 -0.79 1.72 2.22 -1.11
-4.61 -2.91 -7.42 -7.97 -8.43 - -3.68 - -4.55 -7.81 1.61 -1.3 -1.24 -1.29 0.79 -0.05 -1.45 2.37 1.29 1.41 1.5 -3.08 -3.06 - -1.15 -2.04 -1.9 1.28 -0.13 -1.19 1.07 1.8 0.71
- - - - - - - - - - 2.56 - 1.16 - - 0.83 -0.51 - - -0.76 -0.14 - - - 0.7 -4.89 - 1.64 1.93 1.75 1.1 1.56 1.93
-1.62 -1.41 -4.14 -4.5 -4.95 -4.27 -2.99 -4.4 -4.27 -4.54 2.21 -3.33 -1.25 -5.21 -0.81 0.41 -0.6 2.47 1.88 1.54 1.77 -4.75 -2.53 -1.07 -2.52 -2.65 -3.35 0.1 -0.29 -0.76 1.06 1.14 -0.49
1.22 1.01 1.28 0.87 0.55 -0.97 -0.32 -2.84 -2.34 -0.33 -0.58 -0.53 0.37 -1.22 -0.8 -0.7 -2.45 -0.33 -0.47 -1.8 -0.67 -1.43 -0.52 -2.54 0.62 -2.45 -2.1 -0.79 1.05 1.56 -0.28 -0.71 1.76
- - - - - - - - - - 2.19 - -1.91 - 0.0 1.16 1.3 1.43 1.5 1.33 1.46 - - - -0.96 -0.23 0.18 1.33 -1.04 -0.28 1.38 1.28 -1.64
-0.53 -1.14 -1.1 -0.11 -0.35 0.7 1.0 -1.09 -0.78 -0.1 -0.24 0.86 -0.55 0.47 0.57 -1.17 0.06 -1.19 -0.89 -0.23 -0.43 -0.58 -0.99 -0.12 0.77 -0.08 0.31 0.06 0.32 0.56 -0.26 0.3 0.97
- - - - - - - - - - 0.19 - -2.06 - 0.53 2.26 -1.95 1.04 0.36 -0.57 1.64 -2.33 -3.1 - 0.33 -2.2 -0.8 1.41 0.94 0.92 1.81 2.24 -0.09
- - - - - - - - - - -0.8 - -0.0 - 0.26 1.51 -1.73 -0.45 1.52 -0.22 0.81 - - - 0.0 -5.76 -2.03 1.45 1.17 1.63 2.19 2.65 -0.62
- - - - - - - - - - 0.67 - - - - 0.02 -0.57 -0.82 0.66 0.92 0.85 - - - - -4.61 - 1.96 1.0 1.87 1.85 2.56 2.26
0.02 -0.48 0.55 0.15 0.52 0.13 0.14 -0.47 -1.22 -1.28 0.26 -0.41 0.39 -1.01 0.21 0.34 -0.25 0.16 0.17 0.06 0.12 -0.23 0.03 0.39 0.22 -0.63 -0.6 0.3 0.17 -0.0 0.27 -0.07 -0.07
-1.09 -1.81 -0.92 -0.6 -0.39 0.21 -1.05 -1.34 -0.92 -0.79 1.41 -1.47 -0.41 -2.01 -0.25 0.33 0.6 1.3 1.19 0.76 1.15 -1.88 -1.07 -0.39 -0.55 -0.75 -0.36 0.04 0.44 0.55 0.08 -0.13 0.58
-1.78 -2.52 -0.6 -0.91 0.34 -0.96 -0.31 -1.02 -1.35 -1.0 0.31 -2.15 -1.67 - -0.52 0.28 -0.22 0.34 -0.01 0.22 0.19 -0.75 -1.49 0.12 -1.67 -0.23 -0.65 1.53 0.86 0.97 0.71 1.13 1.98
-4.79 -5.88 -4.88 -7.45 -5.54 - -0.65 -6.52 -5.01 - 0.3 -1.28 -1.04 -4.08 0.71 0.59 -0.25 -2.42 -0.48 0.72 0.36 -0.8 -0.74 0.29 -4.04 0.31 -0.39 1.84 0.64 0.98 1.16 1.59 2.43
-0.95 -0.48 -1.15 -0.4 -0.32 0.39 0.82 -1.59 -0.58 -1.02 0.51 0.78 -0.37 0.93 -1.28 0.65 -0.49 0.42 0.53 0.44 0.49 0.09 -0.13 -0.08 0.29 -0.17 -0.56 -1.02 -0.27 0.65 -0.81 -0.97 0.55
- -5.73 - -4.37 -4.9 -2.74 -1.62 - - - 2.68 -0.75 -0.6 - -1.58 0.38 0.55 0.64 1.97 1.28 1.58 -2.52 - - 1.26 -1.85 -0.56 0.82 0.05 0.3 -0.22 -0.18 0.55
0.85 0.01 1.58 0.81 0.12 0.15 0.0 -1.4 -1.7 -0.11 -1.46 -3.19 -1.11 -3.12 0.4 -1.52 -1.47 -1.58 -1.46 -1.75 -1.25 -1.91 -1.91 -1.39 -2.32 -1.37 -1.36 0.83 0.96 2.07 1.03 0.57 1.48
0.41 -0.38 1.15 0.9 0.35 -0.6 0.42 -1.68 -2.72 -2.42 0.14 -0.48 0.44 -0.01 0.02 0.53 -2.5 0.19 0.41 0.58 0.13 0.17 -0.43 0.52 -0.18 -6.98 -7.22 0.51 0.54 -0.2 0.02 -0.1 0.19
-0.64 -1.78 0.51 0.38 0.28 -0.63 -0.08 -3.08 -3.47 -2.51 0.67 -1.79 -0.12 -1.54 0.12 0.14 -0.43 0.16 0.64 0.14 0.76 -0.15 -4.08 -6.8 -0.92 -2.38 -2.07 0.72 1.38 1.42 0.75 0.54 1.38
- - - - - - - -7.05 - - -6.31 -1.56 -3.57 -3.2 2.32 -2.29 -3.53 -0.73 - - -4.68 -0.85 -5.32 -3.28 -6.16 1.18 0.34 1.89 2.57 1.53 1.08 -0.27 2.76
-5.16 -6.1 -2.37 -3.18 -1.98 -0.68 -0.61 -3.5 -2.46 -2.59 -1.43 -0.58 -1.07 -5.03 -2.71 -1.31 -0.5 -0.26 -1.36 -2.54 -2.29 -1.34 -2.57 0.0 -0.47 0.1 0.6 1.71 0.43 1.62 1.49 2.24 2.62
-0.74 -0.47 -1.96 -1.56 -1.79 -3.08 0.48 -6.12 -2.38 -5.64 1.03 -1.13 -2.28 -1.88 -0.07 1.01 -0.76 1.31 0.89 1.62 1.55 -2.99 -4.33 -5.46 -4.17 -0.46 -0.22 0.74 0.19 0.71 0.69 0.88 1.29
-5.06 - - - -5.64 -4.03 -0.12 - - - 1.23 -4.99 0.31 -4.99 -0.49 0.8 -0.06 0.43 1.58 1.77 1.76 -3.56 -5.11 -4.07 -0.19 -1.66 -1.03 1.02 0.07 -0.11 1.8 1.77 0.01
-2.51 -3.29 -4.1 -5.43 -4.89 -4.14 -0.06 -2.91 -4.27 -2.03 1.12 -2.65 0.01 - -0.6 -0.31 -0.18 0.49 1.09 0.94 0.82 -3.91 -3.38 -4.22 -0.09 -1.26 -0.03 1.72 0.21 0.02 2.29 2.13 -0.06
-0.1 -0.5 1.54 1.01 0.59 0.11 0.32 -3.74 -2.89 -4.34 0.11 -2.37 -1.16 -3.78 -1.28 -0.6 -1.0 0.26 -0.04 -0.82 -0.14 -0.74 - - -1.08 -2.43 -1.64 0.9 1.09 1.51 1.09 0.7 1.66
- -2.95 - - - -1.7 -3.59 - -2.94 -2.83 2.43 -2.54 -2.29 - -2.53 0.38 -1.4 1.19 2.08 -0.63 1.05 - - - - -3.32 -3.64 1.01 0.97 1.42 0.76 0.4 2.46
- - - - - - - - - - 1.02 -3.61 -1.52 - 0.21 1.95 -4.14 1.76 2.48 0.39 2.06 - - - -0.98 -5.27 -1.56 1.5 1.48 -0.71 0.27 0.09 0.73
-7.21 -3.23 -4.25 -5.77 -3.73 -2.48 -4.94 -5.39 -6.89 -4.1 0.14 0.96 -1.85 -0.27 -2.02 0.19 0.93 -0.65 1.35 0.56 1.2 -1.18 - -1.73 0.2 -1.03 -0.59 1.26 1.22 1.44 1.17 0.82 1.82
-3.79 -4.24 -6.12 -2.89 -2.79 -3.07 -0.08 -6.96 -8.84 -6.66 1.88 -2.98 -0.3 -3.76 0.4 1.28 -0.54 1.82 1.95 1.72 1.8 -3.49 -5.47 -2.94 -0.35 -3.12 -2.54 0.52 -1.11 -1.22 1.03 1.07 -1.29
-3.1 - - - - - - - - - 1.24 -2.4 -0.1 -1.39 0.83 1.16 -1.67 2.26 1.92 0.89 1.81 -2.04 -3.51 -2.65 -3.36 -2.79 -1.56 1.3 0.98 -0.0 1.01 0.47 -0.23
-2.13 -1.22 -3.57 -3.15 -3.21 -2.49 0.96 -2.34 -2.01 -1.37 0.44 0.49 0.28 -1.28 1.02 -0.32 -1.04 -0.16 -0.56 -0.56 -0.31 -0.53 -2.02 0.78 -0.2 0.78 0.67 -0.75 1.59 1.76 -0.59 -1.03 1.75
-4.43 -5.17 -4.29 -3.97 -3.09 -2.27 -0.43 -2.82 -3.01 -1.36 0.38 0.13 -1.8 -0.89 -0.9 -0.44 -0.18 -0.4 -0.35 -0.33 -0.54 -0.48 -0.7 -0.33 -0.86 0.59 0.81 1.34 1.61 1.62 1.05 0.85 2.07
- - - - - - - - - - -1.66 - -2.97 - - - -0.46 -1.81 0.09 0.02 1.75 - - -0.14 - - - 1.83 2.36 2.14 1.33 1.54 2.74
-5.62 -3.97 - -4.15 -6.85 - -1.1 - - - 0.99 -0.23 -0.16 0.34 0.24 1.2 -0.41 1.34 0.62 0.34 1.44 0.2 1.06 - -4.5 -4.24 -4.0 -0.6 1.26 0.97 -1.54 -0.77 2.52
- - - - - - - - - - 2.37 -0.5 -3.97 -1.24 -4.05 1.35 0.92 1.17 1.16 0.74 1.48 -1.4 -0.78 -2.13 0.13 -0.76 -0.56 -0.98 1.28 1.15 -1.42 -1.41 1.9
- - -5.63 - - - -2.57 - - - 1.89 -1.96 -1.15 -3.0 1.3 1.13 -0.78 1.89 1.72 1.72 1.76 -3.32 -1.28 -5.58 -0.61 -1.24 -1.38 0.69 -0.59 -2.22 0.73 1.16 -0.06
-5.25 -5.79 -5.93 -6.54 -4.85 -5.07 -6.26 -8.97 -4.58 - 2.25 -4.13 -0.62 -5.66 1.81 1.46 0.8 1.52 1.69 1.4 1.51 -4.53 -2.89 -9.38 -1.84 -7.44 -2.72 -0.59 0.27 0.91 0.1 -0.46 0.66
- - - - - - - - - - 2.01 - -2.53 - 1.39 0.79 -1.19 2.74 1.66 1.07 1.63 - - - -0.99 -0.32 -0.75 -1.5 0.11 -2.08 1.14 1.51 -1.41
- - - - - - -4.53 - - - 1.93 -1.85 -0.64 -1.11 1.2 0.42 -0.79 2.19 1.78 1.42 1.83 -3.77 -3.27 -8.98 -0.87 -2.55 -2.39 1.08 -0.97 -1.26 0.61 1.37 0.09
-0.77 -1.0 -0.21 0.21 0.03 -0.03 1.13 -2.12 -0.51 -3.32 0.76 -0.51 0.24 -1.01 0.19 0.83 -0.07 0.45 0.41 0.53 0.3 -3.27 -0.66 -1.71 0.19 -1.63 -1.38 -0.24 0.9 1.06 0.03 -0.19 0.82
-1.7 -0.97 -2.02 -1.06 -2.01 -1.2 -0.76 -0.78 -0.9 -1.45 1.07 -1.58 0.38 -0.83 -0.86 0.66 0.27 0.85 0.87 0.27 0.87 -1.11 -0.78 -1.94 0.49 -0.61 0.0 0.88 0.69 0.68 1.03 0.72 0.38
- -9.25 - - - - - - - - 1.09 -3.55 -2.05 -3.75 -0.19 0.51 -0.91 0.87 0.92 2.07 1.04 -5.97 -2.15 -6.38 -3.96 0.52 0.05 0.83 1.11 1.45 0.86 1.31 1.97
-2.71 -1.89 -5.49 -3.76 -2.68 -4.72 -5.65 -3.12 -5.99 -5.02 1.89 -2.01 -4.09 -1.13 -1.42 1.37 -3.53 1.53 1.21 0.81 0.39 -2.78 - - -2.55 -2.42 -2.16 1.33 1.64 1.32 -0.49 -0.84 2.63
- -5.25 -5.98 - - - -1.02 - - - 1.04 - -1.07 -0.45 0.98 1.71 0.08 -0.68 -1.02 0.74 0.07 -1.88 - -4.7 0.76 -1.1 -1.11 1.83 1.55 1.38 0.85 0.76 1.83
-3.73 -2.48 -5.94 -4.84 -5.93 -4.11 -2.51 - -5.05 -4.21 1.43 0.03 -1.61 -1.55 -0.2 1.28 -0.46 1.88 1.09 1.01 1.32 -1.21 -1.8 -4.03 -4.26 -5.15 -5.15 -0.23 1.5 1.33 -1.42 -0.22 2.41
-4.95 -3.08 -2.35 -3.98 -1.67 - 0.81 -4.57 -2.14 - -0.44 -0.55 -4.31 -4.24 -0.15 0.58 -1.45 0.29 0.54 0.19 0.15 -3.22 -2.36 - -4.21 -1.12 -0.72 1.79 1.45 1.17 1.5 1.77 2.31
-0.86 -1.13 -0.33 0.01 -0.03 0.18 0.37 -1.15 -0.49 -0.23 0.63 -0.02 0.26 -0.03 -0.09 0.51 0.23 0.41 -0.41 0.08 0.28 -0.24 -0.33 -1.13 0.19 -0.16 -0.0 -0.38 0.18 0.81 -0.42 -0.55 0.96
- - - - - - 0.67 - - - 0.42 0.38 0.3 - - - 0.01 - 0.36 - - -0.55 - -0.87 0.42 -1.57 -0.68 1.06 0.44 1.8 1.46 2.81 2.33
-5.63 -4.58 - - -11.08 - -4.49 -8.54 - -5.8 0.92 -4.87 -0.97 -4.52 0.18 0.35 1.71 0.45 1.66 1.38 1.81 -3.78 -4.72 -4.85 -0.63 -0.05 0.38 0.52 1.01 1.07 0.56 0.35 1.45
-1.08 - -2.49 - -1.86 - -0.62 - -3.0 - 0.57 -0.6 -1.07 -1.59 1.22 -1.68 -1.25 0.48 1.19 1.48 -0.07 -0.94 -0.71 - -1.55 -2.58 -2.92 0.77 0.57 1.4 0.91 1.61 2.41
- - - - - - - - - - -2.48 -2.04 -3.12 -1.13 2.04 -3.91 -4.56 0.39 - - -5.06 -0.14 -3.41 -4.07 - 0.93 -0.03 1.96 2.63 1.37 1.0 -0.29 2.81
-1.19 -0.35 - -0.84 -0.89 - 2.17 - -0.53 - 1.7 0.87 -2.2 -1.12 -1.12 0.79 -0.16 0.54 - 0.79 2.28 - -1.24 - 1.5 - -4.42 -2.2 -0.55 1.19 -1.09 -2.28 0.52
-2.06 -2.53 -3.22 -3.5 -2.78 -2.95 -1.7 -3.57 -2.98 -3.76 1.98 -4.19 -2.66 -4.5 0.83 1.54 -0.34 2.18 2.01 1.72 1.84 -3.83 -4.22 -4.87 -1.48 -2.48 -1.64 0.03 -0.89 -0.87 0.47 0.54 -1.11

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.