Heatmap: Cluster_101 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - 1.98 -0.07 - - 3.73 - - - 0.79 2.28 -0.73 - 2.56 - 0.72 - - - - - -3.64 - - - - - -
- - - - - - - - - - 4.34 - 1.05 - - - 0.48 2.21 2.1 - - - - - - - -1.36 - - - - - -
- - - - - - - - -3.33 - 2.42 - -0.68 - 0.41 2.56 1.33 2.72 1.82 0.96 1.62 -3.5 - - -2.36 -1.83 -1.39 - -1.12 -1.84 -3.27 - -1.72
- - - - - - -4.79 - - - 2.4 -1.76 -4.83 -3.17 0.95 0.62 -0.05 1.39 2.31 1.18 1.82 -4.1 -3.29 - -2.13 0.2 0.37 0.02 -0.21 -0.2 -0.06 1.04 -0.18
- - - - - - - - - - 2.14 -2.96 - - 0.05 0.77 0.41 2.51 2.63 1.97 2.83 - - - -2.92 -1.23 -1.32 - -1.9 - - -2.02 -
- - - - - - - - - - 3.91 1.79 1.15 - - 1.71 0.94 0.28 -0.82 0.11 0.73 - - - 0.25 -1.37 -0.03 - - - - - -
- - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - -
- 2.99 - - - - - - - - 4.65 - - - - - - - - - - - - - - - - - - - - - -
- -2.19 - - -2.94 - - - - - 2.73 - 0.02 - -0.64 2.15 0.49 2.89 2.39 1.14 - - - - 1.27 -2.65 - - -1.66 - - - -0.4
-10.85 -9.68 - -11.31 -11.17 - -10.14 -7.55 -10.86 -5.6 2.22 -2.63 -0.61 -3.93 2.57 0.57 -0.4 1.27 1.51 1.25 1.28 -2.69 -0.3 1.75 -0.08 0.21 0.08 -2.46 -0.96 -1.33 -2.39 -2.93 -1.6
- - - - - - - - - - 3.63 - - - - - -1.51 - - - - - - 4.34 - - - - - - - - -
-6.1 - - - -7.34 - - -4.29 -3.2 - 2.99 - -1.58 - 0.34 0.64 -1.75 2.47 1.79 1.24 1.14 -4.38 - - -1.4 -2.71 -2.34 1.14 -6.15 -2.91 0.04 1.87 -3.64
- - - - - - - 1.8 - - 4.69 - - - - - -1.44 - - - - - - - - - -0.57 - - - 1.43 - -
-8.65 -7.72 -6.83 -6.74 -5.8 -6.0 -5.38 -9.62 -8.26 - 2.42 -5.21 -1.46 -7.29 1.96 2.12 0.5 2.19 1.54 0.8 1.22 -5.99 -3.82 1.8 -1.11 -2.03 -1.77 -2.36 -1.49 -1.63 -2.08 -2.41 -2.91
-2.33 -5.81 -2.51 -1.45 -1.93 -3.18 -2.05 -2.49 -2.71 -4.44 2.36 -4.01 -1.28 -2.0 -0.3 -1.63 1.18 1.5 0.75 -0.4 0.55 -1.56 -0.6 - 0.24 -1.51 -0.75 0.89 1.17 0.93 1.05 0.77 1.25
- -8.1 -10.24 -9.81 -8.39 - -2.29 -9.53 - -6.3 2.65 0.85 -0.18 -0.04 -2.3 1.43 2.01 2.15 1.95 0.98 1.72 -2.14 -3.67 - 0.36 -2.15 -0.99 - - - - - -
- -5.14 - - - - -4.47 - -9.01 -5.93 3.06 -3.55 -0.83 -6.42 -0.56 1.21 2.14 2.22 1.91 0.72 1.46 -4.83 -6.54 - -0.16 -0.61 -0.22 -3.29 -3.98 -2.62 -1.84 -0.97 -3.08
- -8.34 - - - - -5.6 -6.13 -7.95 -8.16 2.37 -1.85 -2.82 -3.22 1.56 0.3 0.12 2.25 2.25 1.12 1.91 -4.89 -5.08 - -1.92 0.32 0.45 -0.54 -0.89 -1.0 -0.78 -0.14 -1.26
- - - - - - -6.33 - - - 2.44 -3.65 -3.86 -5.28 1.11 -0.2 -0.79 2.67 2.49 1.46 2.3 -6.21 -4.4 - -2.74 -0.31 0.26 -2.4 -1.39 -0.93 -1.88 -1.86 -1.98
- - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - -
- -9.22 - - - -5.14 - - - -7.03 2.35 -1.05 -3.36 -3.14 1.62 -0.26 -0.77 1.8 2.7 1.29 2.23 -4.07 -6.72 - -3.24 -1.04 -0.31 -0.69 -1.41 -0.64 -0.64 0.19 -0.52
- - - - - - - - - - 3.98 - - - 2.95 - 1.3 - - - - - 2.82 - - - - - - - - - -
- 3.53 - - - - - - - - 4.06 - - - - - 1.54 - - - - - - - - -0.56 0.33 - - - - - -
- - - - - - - - - - 3.09 - - - -1.89 0.02 -1.67 2.46 2.53 1.01 2.9 - - - - -0.54 0.15 - -2.73 - - - -2.88
- - - - - - 0.29 - - - 3.88 0.33 - - - 1.52 -2.49 2.0 2.63 -1.07 0.76 - - - - -3.26 -4.2 - - -1.98 - - -
-5.94 -9.04 - - - -5.81 -3.58 -7.01 -4.94 -8.34 2.69 -0.32 -2.61 -1.59 -0.0 1.24 0.85 1.4 1.48 1.41 1.59 -2.58 -4.36 -6.49 -2.15 1.03 1.18 -0.67 -0.67 -0.66 -1.13 -0.55 0.06
- - - - - - - - 1.75 - 4.49 - - - - 2.67 -0.42 - - - - - - - - - - - - - - - -
- - - - - - - - - -5.42 2.62 -4.63 -2.22 -4.98 1.24 1.04 -0.23 2.38 2.53 1.55 1.9 -6.92 -3.21 -5.58 -1.86 0.15 0.25 -2.3 -3.08 -3.14 -3.11 -2.02 -3.22
- -0.28 - - 0.06 - - - - 1.63 2.94 1.51 1.19 - - 1.43 1.46 2.01 - -0.16 0.87 - - -0.32 -0.03 -1.72 -1.04 -1.15 - - - - -
- - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - -
-8.8 -5.36 - - -7.56 -8.25 -4.55 -5.18 -6.34 -2.58 2.48 -1.03 -2.27 -2.59 1.56 0.56 -0.11 2.15 2.31 1.13 1.95 -4.39 -4.62 -8.34 -2.01 -0.06 0.16 -0.86 -1.19 -1.12 -1.21 -0.29 -1.35
1.17 1.47 - - - - - 2.09 1.23 0.79 4.16 - - - - - -3.13 - - - - - - - - - -0.99 - 0.22 - - - -
- - - - - - - - - -2.2 3.09 -1.27 -1.66 - 2.04 -0.67 -0.15 1.02 1.2 0.13 1.44 - 0.39 - - -5.49 - 1.13 -3.7 -3.54 1.64 1.56 -
- - - - -0.17 - - - - - 2.96 - - - - - -0.32 1.23 - - 2.09 - - - - - - 1.15 - - 2.06 3.4 -
- - 0.77 - - - - -0.14 2.29 - 3.83 - - - - - - - 0.68 - - - - 3.27 - - - - - - - - -
- - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - -
0.1 -2.93 - -1.91 -1.48 -0.27 - -0.97 - -1.56 1.87 - -2.21 - 0.88 3.04 0.72 2.76 1.43 0.78 0.4 - -1.25 - -0.09 - -3.57 - - - - - -
- - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - -
- - - 1.06 - - - - - - 4.25 1.76 1.69 - 1.77 - -1.44 - - - - - - - - - - - - 0.64 - - -
- - - - - - - - - - 3.72 -1.69 - - -0.68 0.81 1.03 1.91 1.37 1.8 0.95 - - - -1.65 -1.53 -0.24 -2.08 -3.52 -1.14 -1.21 -1.25 -2.67
- - - - - - - - - - 3.18 - -1.8 - 2.19 0.1 -1.29 1.15 1.11 0.09 1.52 - -3.84 -2.8 -0.93 -6.97 -6.06 1.35 -3.05 -4.85 1.29 1.73 -4.62
- - - - - - -1.83 - -1.79 - 3.77 1.26 -0.2 - -1.79 0.12 1.02 1.56 - -0.88 -0.27 -2.72 2.5 - 0.91 - -3.48 - - - - - -
- - - - - - - -3.52 - - 4.58 - - - 1.03 - -1.32 2.11 -1.11 - 0.44 - - -1.34 - - - - - - - - -
- - - - - - - - - - 2.7 -4.21 -1.63 -4.72 1.63 0.82 -0.89 0.98 0.8 0.95 1.09 -5.96 -3.01 -2.26 -2.21 -1.32 -1.16 1.31 -2.37 -2.77 1.87 2.32 -5.19
-0.13 2.06 -3.36 -1.56 -4.29 -4.08 -3.64 -5.78 - -4.76 3.5 -2.93 0.1 -1.86 0.8 1.11 -0.22 1.14 0.61 0.01 0.22 -2.92 -2.38 -5.18 -0.43 -1.46 -0.78 -6.24 -2.09 -0.53 -4.51 -3.3 -0.67
- - - - - - - - - - 2.55 -0.76 -3.83 - 1.5 -0.03 0.49 2.35 2.08 1.36 1.64 -3.1 - - - 0.16 0.38 -0.95 -0.81 -0.77 -0.73 0.12 -1.35
- - - - - - 2.97 - - - 4.42 - - - - - -1.13 - - - - - - - - - - - 1.74 - - - -
- - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - 4.07 - - - - 2.2 -1.61 - 1.84 - 2.23 - - - 0.33 -0.31 -0.05 - - - - - -
-5.74 -5.41 - -6.38 -1.82 -3.01 -4.09 1.84 0.5 0.77 2.33 -1.79 -1.35 -2.51 -0.02 1.46 -0.81 1.95 1.74 0.77 1.34 -7.97 -6.15 -7.28 -0.69 -4.16 -4.26 0.18 -3.07 -4.43 -0.37 0.33 -3.69
-4.44 -7.12 -6.85 -2.64 -3.26 -3.95 - -0.01 -1.46 0.49 2.46 -1.63 -2.08 - -3.0 0.66 -1.22 1.06 1.94 1.14 1.76 -4.67 - - -0.82 -3.29 -3.41 1.71 -1.34 -2.81 0.94 1.81 -2.8
-5.25 -3.01 -5.89 -7.69 -8.25 - 0.08 -4.69 - -1.78 2.05 2.37 0.11 1.78 -2.41 0.95 1.2 1.75 1.25 0.51 1.03 -0.38 -3.71 -5.99 0.49 -0.57 0.05 - - - - - -
- - - - - - - -2.3 - - 2.91 0.19 -0.1 -0.86 -1.45 0.55 -0.42 1.53 1.52 1.01 1.98 - - - 0.5 -0.4 -0.25 1.26 -2.42 - -0.18 0.92 -
- - - - - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - -
- - - - - - -2.95 -6.06 - - 2.0 0.64 -1.77 0.71 2.04 0.9 -0.6 1.4 1.47 1.37 1.78 0.63 -0.93 -5.47 1.02 0.04 -0.04 -2.5 -3.11 -3.46 -2.03 -1.23 -3.02
-7.83 -3.04 -4.69 -8.91 -9.57 - 0.04 -5.08 - -4.48 1.86 1.97 -0.19 0.8 0.09 1.79 1.09 1.6 1.3 1.11 1.43 -1.16 -3.72 -6.06 1.08 -0.05 -0.09 -8.44 - -8.25 - -7.95 -
- -6.76 - - - - -6.19 -4.67 -6.06 -5.04 2.72 -1.97 -2.13 -2.81 1.63 0.4 0.09 2.18 2.33 1.25 1.86 -6.07 - - -1.51 -0.18 0.09 -1.37 -1.6 -1.11 -1.73 -0.67 -2.38
- -7.08 - - - -7.56 -5.57 -5.26 -6.88 -1.95 2.46 -1.63 -2.44 -3.37 1.86 0.2 -0.06 1.89 2.27 1.24 1.75 -4.52 -3.58 - -1.82 0.44 0.67 -0.86 -1.12 -0.95 -1.14 -0.24 -1.48
- - - - - - - - -2.21 - 2.9 1.96 1.62 - 0.38 - 1.89 2.33 1.09 - 0.32 - - - 0.42 -3.33 -2.02 -1.28 - 0.31 -1.42 0.01 -2.18
- - - - -7.47 - -5.34 -5.15 - - 2.39 -1.85 -2.92 -3.71 1.03 0.26 0.11 2.21 2.68 1.39 1.58 -6.23 -2.25 - -2.26 -0.76 -0.18 -0.82 -0.67 -0.27 -0.71 0.26 -0.91
- - -2.08 - - - 0.96 - - -1.43 2.27 -0.01 -2.07 - 0.32 0.23 1.24 1.07 -2.03 -1.09 -0.06 -0.64 1.05 -0.25 -0.96 -0.84 -0.83 1.21 1.1 0.83 0.88 -1.37 1.13
- - - - - - - - - - 2.78 - -2.6 0.28 -0.32 1.58 0.23 1.39 2.33 1.58 2.22 -1.21 - - -2.5 0.74 0.38 -3.13 -3.65 -1.99 -4.26 -2.08 -2.56
-6.75 -7.86 -9.9 -7.74 -6.53 -6.17 -5.57 -5.63 -6.27 -4.89 2.04 -1.48 -0.94 -0.75 2.54 0.46 -0.91 1.23 1.49 1.18 1.37 -2.45 -0.37 1.07 -0.21 0.28 0.13 -0.8 -0.27 -0.73 -1.07 -1.66 -0.87
-4.27 -3.42 - - - - -1.24 - - - 3.02 1.93 1.66 0.13 - -0.29 0.93 0.88 -0.42 0.62 0.99 -2.21 2.17 - 1.09 -2.2 -1.49 - - -4.2 - - -
- - - - - - - - - - 1.97 -2.25 -3.1 - 0.96 -0.01 0.34 2.52 2.5 1.67 2.19 - - - - 0.44 0.3 -0.52 -1.6 -2.4 -1.01 -0.31 -1.6
- - -9.26 -10.31 -9.31 -8.07 -5.25 -10.37 -8.92 - 1.92 -0.93 0.34 -0.45 1.27 0.48 0.36 1.63 1.44 -0.08 0.96 -0.87 -0.23 -3.26 1.08 -3.38 -3.04 0.78 0.1 0.46 0.67 0.71 0.7
- - - - - - - - - - 3.58 - - - - 0.33 2.03 2.91 1.13 1.06 1.1 - -1.29 - - -4.39 -1.43 - -2.0 - - -0.61 -
- - - - - - - - - - 2.99 -1.99 -1.48 - 0.88 -0.48 1.25 2.43 2.03 0.97 1.74 - -2.52 - -1.94 -2.07 -1.52 -1.13 -0.1 -1.96 -1.18 0.07 -0.93
- -2.29 - - - - - -2.6 - - 2.41 - -1.74 - 1.7 0.61 -2.26 2.15 -0.69 0.25 -0.19 - -0.78 -0.91 0.73 -3.93 -2.03 2.17 -1.75 - 1.48 2.08 -
- -7.92 - - -6.51 - -1.54 -7.21 - -4.9 2.29 2.1 0.5 1.19 -1.63 1.46 1.1 1.94 1.4 0.58 0.96 -1.03 - - 1.12 -0.06 -0.01 - - - - - -
- - - - - - - - - - 5.01 - - - - - -0.52 - - - - - - - - - - - - - - - -
- - - - - - - - - - 2.7 -0.79 -2.23 - 1.09 0.6 -1.11 1.12 1.63 1.31 1.41 -4.89 - - -1.11 -3.65 -3.29 1.79 0.8 -0.13 0.51 1.04 -0.19
- - - - -2.99 - - - - - 4.19 2.45 -0.63 - -0.54 - -3.14 - - 0.36 0.39 -0.64 - - 0.49 - - -0.48 - - 0.36 - 0.09
- - - - - - -6.45 -3.96 - - 2.25 - -5.51 - 0.68 0.61 -0.26 2.52 2.61 1.62 2.54 -6.36 -3.97 - - -0.29 -0.1 -2.48 -1.21 -1.5 -2.58 -1.42 -3.07
- - - - -0.26 - - - - - 4.64 - - - - 2.87 - - - - - - - - - - - - - - - - -
- - - - - - 0.86 - - - 1.59 0.4 -0.45 1.89 - 0.54 2.03 1.73 0.6 -1.1 1.83 0.46 -1.13 0.82 1.11 - - -1.14 -1.5 -0.34 -2.22 -3.33 -1.4
- - - - -3.47 - -3.8 - -2.57 - 3.11 1.57 0.7 1.06 -0.42 0.97 1.82 2.46 -1.19 0.33 -1.23 -0.51 -0.06 - 0.75 -4.51 -3.12 - - - - - -
- -6.99 - - - - -5.19 -8.86 - -5.17 2.38 -3.71 -3.86 -4.62 1.52 0.08 0.15 2.5 2.21 0.94 1.72 -6.88 - - -3.05 0.01 0.62 -0.61 -0.29 -0.24 -1.14 -0.11 -0.71
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - - - - - -4.99 - - - 1.66 -2.94 -0.15 -1.76 1.28 0.84 -1.11 3.06 2.56 1.24 2.28 -0.84 - - -1.72 -0.8 -0.88 -4.25 -5.05 -3.33 -4.15 -3.5 -4.83

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.