Heatmap: Cluster_83 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-3.12 -5.42 -3.49 -3.41 -2.46 -1.21 -1.26 -3.02 -4.39 -1.88 1.67 -0.17 0.88 -1.58 0.89 1.68 1.19 1.7 1.6 1.72 1.43 -0.05 -1.0 -0.44 0.54 -0.6 -0.51 -4.68 -3.67 -3.9 -4.03 -4.73 -4.46
-3.06 -2.69 -5.53 -5.56 -5.04 -4.7 -2.93 -4.82 -4.92 -3.13 2.43 -1.22 -1.29 -1.43 -0.27 1.43 0.78 1.85 2.09 1.81 1.94 -2.18 -1.44 -1.31 -0.98 0.28 0.44 -2.92 -2.8 -1.81 -3.49 -2.3 -1.65
- - - - -6.3 -4.74 - - - - 1.66 -0.2 -4.08 -1.12 -0.33 0.88 0.7 2.03 2.13 2.28 2.34 -4.52 -0.38 -1.03 -2.55 0.5 0.8 -2.91 -3.89 -2.14 -3.07 -1.27 -2.39
-1.42 -1.55 -1.39 -1.6 -1.26 -0.55 -1.58 -0.66 -0.74 -0.26 1.32 -0.58 0.89 -1.3 0.11 1.2 0.82 1.01 1.67 1.26 1.47 -1.29 -1.24 -1.65 0.12 -0.29 -0.07 -1.42 -1.06 -0.52 -1.06 -1.0 -0.67
-2.84 -2.98 -2.63 -2.24 -3.05 -2.68 -2.43 -3.21 -2.55 -1.73 1.83 -3.77 -3.15 -3.21 -0.64 1.4 -0.0 2.14 2.34 2.56 2.45 -6.86 -7.58 -6.72 -2.67 0.08 -0.26 -6.02 -5.07 -4.1 -5.99 -5.33 -2.8
-3.4 -3.24 -3.22 -2.89 -3.16 -2.92 -3.0 -3.15 -2.39 -2.06 2.02 -4.54 -3.08 -2.55 -1.93 1.99 -0.15 2.42 2.08 2.44 2.25 -5.65 - - -3.08 0.22 -0.16 -9.63 -4.57 -4.88 -6.08 -6.04 -4.64
- - - - - - - -9.15 - - 2.38 -5.98 -0.55 -7.29 -0.77 -0.07 0.66 2.56 2.4 1.45 2.25 -9.23 -2.96 -4.85 0.41 0.62 1.0 -5.81 -4.88 -3.11 -5.12 -4.86 -3.76
-5.52 -4.2 -8.12 -7.43 -10.95 - -3.85 - - - 2.2 -5.48 -2.27 -4.95 0.43 0.82 1.0 2.28 2.21 2.48 2.27 -6.66 -8.77 -2.95 -1.6 0.12 0.49 -9.58 - - -9.86 -9.47 -9.63
-0.85 -0.77 -1.14 -1.2 -1.59 -1.26 -1.33 -0.66 -1.17 -0.19 1.46 -0.04 -0.38 -0.07 0.18 0.58 -0.31 1.38 1.68 1.63 1.61 -1.33 -0.71 -1.31 -0.29 -0.08 -0.2 -1.39 -1.18 -0.71 -1.38 -1.03 -0.51
-11.34 -10.26 -10.86 -11.33 -10.5 -11.28 -8.26 -11.57 -11.43 -9.06 1.9 -3.08 0.87 -4.21 -0.59 1.75 1.51 1.71 1.94 1.78 1.84 -3.83 -1.94 -3.05 0.71 -0.12 0.16 -1.62 -2.04 -1.4 -1.89 -1.43 -0.93
-15.25 -14.69 - -14.56 -14.26 -12.37 -8.94 -10.68 -9.79 -10.47 1.65 -1.79 1.04 -2.71 -0.23 1.44 1.21 1.62 2.09 1.78 1.88 -3.05 -1.48 -1.99 0.66 0.22 0.4 -1.97 -1.77 -0.86 -1.56 -1.34 -1.24
- - - -8.81 -9.47 - -2.23 - - - 1.91 -2.23 -2.49 - -1.94 1.44 0.08 2.53 2.42 1.69 2.59 -3.57 -2.45 -4.47 -3.08 -0.25 -0.19 -1.52 -0.94 -1.81 -1.28 -2.28 -1.76
-3.05 -2.88 -3.29 -3.19 -3.13 -2.33 -3.35 -2.63 -2.89 -1.76 1.58 -1.72 0.69 -2.23 0.06 1.48 1.3 1.37 1.72 1.64 1.64 -2.33 -1.75 -2.89 0.34 0.18 0.39 -1.14 -1.03 -0.54 -0.74 -0.37 -0.61
-3.22 -2.16 -2.69 -2.18 -2.97 -2.59 -1.69 -4.37 -3.55 -3.75 1.87 -0.32 0.1 -1.7 0.15 0.88 1.03 1.43 2.32 1.94 1.97 -1.48 -0.72 -1.05 -0.17 -0.44 -0.07 -2.95 -3.1 -2.56 -2.41 -2.46 -1.32
-1.36 -1.43 -1.48 -0.89 -0.94 -0.68 -2.18 -1.32 -1.62 -1.47 1.57 -1.45 -0.39 -1.0 0.6 1.02 0.23 1.5 1.82 1.64 1.63 -1.66 -1.72 -1.95 -0.2 0.09 0.28 -1.32 -1.05 -0.95 -1.12 -0.79 -0.89
- - - - - - - - - - 1.99 -4.72 -0.13 - -0.66 0.23 0.51 2.54 2.34 2.06 2.35 - - -3.96 0.42 0.43 0.85 -6.64 -6.73 -4.23 -6.93 -5.53 -4.06
-12.67 -10.11 -10.03 -11.23 -10.35 -9.26 -3.69 - -13.34 - 2.47 -5.0 -0.23 -5.73 -2.48 0.97 1.28 2.18 2.31 2.03 2.14 -8.42 -4.45 -3.87 -0.77 0.49 0.84 -10.01 -8.66 -6.62 -9.45 -6.17 -8.23
- - - - - - - -7.52 - - 1.96 -0.63 -3.21 0.12 -2.5 2.01 -0.21 2.91 0.38 2.66 1.96 -1.1 -6.21 -1.93 -4.76 0.27 -0.19 -4.19 -5.06 -6.32 -4.51 -2.61 -7.22
-2.78 -4.46 - -4.99 - - -1.35 - -5.7 - 1.5 -3.3 1.09 - -0.75 1.85 0.98 1.32 2.1 2.11 2.31 -1.04 -0.76 -1.65 0.91 -1.49 -1.27 -2.01 -1.63 -3.7 -4.44 -4.32 -1.9
-1.45 -1.82 -1.11 -0.96 -0.98 -0.51 -0.76 -0.92 -0.93 -0.21 1.09 -0.25 0.27 -0.81 0.21 0.97 0.36 1.1 1.44 1.11 1.34 -0.55 -0.45 -1.01 0.04 -0.12 -0.07 -0.81 -0.58 -0.24 -0.65 -0.72 -0.29
-8.24 -6.88 -5.8 -7.96 -6.41 -7.33 -2.29 - -3.73 - 2.4 -0.48 -0.35 -3.47 -2.31 0.96 1.17 1.92 2.27 1.8 2.17 -2.64 -2.97 -0.84 -0.11 0.15 0.54 -6.68 -3.87 -2.61 -6.56 -6.58 -2.18
- - - - - - - - -8.87 - 1.99 0.65 0.0 0.59 -1.01 1.1 1.44 1.6 1.94 1.37 1.67 -0.75 0.82 -3.36 1.19 -0.86 0.13 -3.92 -4.36 -3.04 -3.66 -2.9 -2.84
- - - - -7.21 - -7.28 -7.08 - - 2.5 -0.85 -0.58 -0.28 -1.05 1.01 0.85 2.11 2.45 1.63 2.34 -6.24 -6.34 - -0.96 -0.66 0.12 -3.28 -2.94 -2.97 -5.83 -3.81 -1.48
-3.47 -4.96 -4.05 -5.47 -5.72 -4.06 -6.09 -4.82 - -4.29 2.28 -1.02 -0.81 -1.01 -0.67 1.13 0.9 2.14 1.93 1.69 2.02 -1.97 -2.35 -3.71 0.09 0.56 0.49 -2.18 -2.37 -2.04 -3.26 -2.84 -0.59
-5.64 -5.58 -5.23 -6.55 -6.63 -4.33 -3.65 - -4.75 -4.98 2.05 -1.21 1.09 -1.54 -0.89 1.46 0.74 1.73 1.85 1.75 1.77 -2.01 -2.51 -1.62 0.81 0.14 0.49 -1.79 -1.61 -1.35 -1.62 -1.73 -1.49
- -5.94 -5.32 -6.0 -6.06 -6.26 -0.19 -5.29 -7.52 -4.81 1.25 -0.33 1.1 -2.3 -0.46 -0.19 -0.32 2.07 1.44 0.83 1.96 -0.4 -0.58 0.04 1.55 -0.52 -0.7 -0.38 -0.1 -0.7 -0.82 -1.26 0.56
- - -0.66 -3.16 -1.15 - - -3.81 - - 1.2 - -2.45 - -0.95 2.66 0.42 2.9 1.82 2.08 2.11 - - - -0.11 -2.24 -4.31 -3.89 - -2.04 - - -3.86
-3.08 -2.55 -3.22 -3.42 -2.96 -2.84 0.32 -3.53 -3.26 -2.77 1.45 0.64 0.62 0.07 1.06 1.5 0.75 1.5 1.47 0.98 1.39 0.13 -0.2 -0.17 0.82 -0.89 -0.52 -2.53 -2.72 -2.27 -2.17 -1.96 -3.11
-2.98 -3.12 -2.36 -2.51 -2.0 -1.38 -0.71 -1.73 -1.84 -1.36 1.0 -0.55 0.77 -0.19 -1.1 0.13 0.13 2.01 1.44 0.28 1.47 -0.55 -0.53 0.16 1.23 -0.88 -0.77 -0.22 0.23 -0.34 -0.66 -1.06 0.69
- - - - - - -5.59 - - - 2.32 -3.03 0.61 -2.74 -2.09 1.5 1.31 1.9 2.36 1.86 2.11 -3.39 -4.67 -4.22 0.18 -0.22 0.27 -2.69 -3.96 -3.78 -3.62 -4.31 -4.4
-10.37 -10.09 -10.1 -9.99 -9.5 -9.51 -10.64 -8.22 -9.47 -5.35 2.13 -1.02 -0.03 -1.69 -0.35 0.91 0.62 1.63 1.86 2.04 2.02 -3.33 -2.22 -3.01 -0.28 0.1 0.31 -0.94 -0.83 -0.08 -0.95 -0.42 -0.21
-1.96 -2.05 -1.87 -2.03 -1.76 -0.93 -1.72 -1.3 -1.56 -0.25 1.7 -0.07 -0.24 0.15 0.38 1.11 0.05 1.59 1.43 1.23 1.48 -0.87 -1.29 -2.18 -0.02 0.17 0.28 -1.01 -0.87 -0.81 -1.02 -0.98 -0.59
- - - - -7.45 - -8.07 - - - 2.08 -0.81 -4.48 0.33 -0.2 1.25 0.83 2.3 1.95 2.06 2.08 -4.69 -1.98 -1.1 -2.73 0.42 0.17 -2.44 -4.41 -2.91 -2.79 -0.51 -3.92
-2.71 -2.64 -3.61 -3.92 -3.69 -4.14 -3.14 -3.1 -1.95 -2.63 2.46 -2.91 0.49 -3.98 -1.52 -0.39 1.83 1.56 2.04 1.13 1.82 -4.25 -2.13 -1.06 0.49 0.32 0.74 -1.68 -2.48 -1.54 -1.6 -0.57 -1.88
- - - - - - - - - - 2.4 -3.25 0.49 -4.83 1.26 -0.22 0.16 2.68 1.88 1.47 2.23 -2.96 - -1.76 0.53 0.16 0.03 - -5.95 -2.72 -5.92 -3.81 -5.73
-12.82 - -15.15 - - -12.96 -9.6 -13.01 - - 2.49 -7.25 -0.45 -7.35 -3.59 0.69 2.16 2.03 2.41 1.84 2.27 -10.36 -5.94 -6.52 -1.63 0.11 0.3 -13.68 - - -13.78 - -
-4.77 -5.64 -6.56 -4.75 -4.68 -5.89 -1.95 -9.24 -5.6 -4.33 2.11 0.42 0.54 0.03 -0.3 0.93 1.7 1.57 1.19 0.89 1.35 0.87 -1.45 -2.45 0.89 -0.27 0.04 -1.12 -1.31 -1.6 -0.9 -1.01 -1.17
- -7.55 -3.54 - -6.55 -2.63 -5.21 -4.27 -7.15 - 1.96 -0.43 0.31 -0.19 1.08 0.98 0.61 1.23 2.33 2.02 2.23 -2.49 -2.28 -3.19 1.04 -1.71 -0.99 -3.08 -3.81 -3.28 -2.76 -2.89 -2.11
-2.38 -4.09 -2.6 -3.3 -1.73 -3.68 -1.2 -3.03 -1.89 -2.4 1.92 -0.62 -1.71 -0.94 -0.1 1.49 0.53 1.41 2.04 1.7 2.22 -0.66 -1.68 -0.02 -0.71 0.08 0.18 -2.14 -2.24 -2.47 -3.49 -2.77 -1.45
- - - -5.67 -7.5 -5.41 - - - -4.36 1.94 -5.21 -1.16 -6.2 -0.5 1.2 1.86 2.05 2.13 1.66 2.6 -7.14 - -2.99 -0.62 -0.53 0.29 -2.77 -2.74 -2.18 -2.45 -1.74 -1.02
-4.52 -8.13 -4.22 -5.99 -4.74 -5.29 -8.79 -5.0 -7.41 - 1.71 -6.16 -1.18 -5.73 -0.34 2.03 1.31 1.83 2.44 1.95 2.5 -8.83 - -2.21 -1.14 -1.12 -0.4 -3.24 -3.32 -2.23 -2.73 -1.76 -1.3
-3.47 -4.41 -4.54 -5.27 -4.67 -4.17 -0.99 -4.02 -4.89 -3.25 1.82 -0.42 -0.53 -2.2 1.6 1.37 0.6 1.03 1.86 2.14 1.91 -3.13 -2.76 -2.36 -0.9 0.02 -0.28 -1.78 -1.3 -0.58 -1.42 -0.96 -0.37
-6.25 -5.98 -8.54 -6.8 -5.48 - -5.37 -6.82 -6.43 - 2.47 -3.56 0.82 - 0.65 1.23 1.28 1.57 2.52 1.25 2.21 -3.95 -2.85 -3.8 0.65 -0.57 -0.15 -6.33 -6.48 -8.13 -5.04 - -
- - - - - - -7.68 - - - 1.89 -5.08 -2.03 -5.65 0.08 0.85 1.53 1.92 2.48 2.34 2.34 -5.63 - -2.38 -1.79 0.53 0.84 - - - - - -
-1.48 -1.76 -1.64 -1.92 -1.82 -1.45 -0.55 -1.98 -2.11 -1.67 1.15 -0.01 0.74 0.35 -0.17 0.48 -0.0 1.71 1.37 0.7 1.53 -0.1 -0.13 0.35 0.62 -0.25 -0.06 -1.03 -0.7 -1.0 -1.22 -1.19 -0.18
-8.07 -9.51 -9.83 -9.41 -9.15 - -8.73 -8.48 -7.67 - 2.0 -4.54 -1.02 -6.12 -0.37 1.66 1.53 2.1 2.22 1.98 2.41 -7.06 - -2.47 -1.0 -0.92 -0.24 -2.94 -3.41 -2.09 -2.87 -2.22 -1.03
-11.09 -10.59 -16.35 -12.14 -11.59 -14.24 -7.37 -9.24 -8.87 -6.39 1.88 -1.81 1.08 -3.23 -0.71 1.25 1.13 1.44 2.25 1.84 2.05 -2.78 -1.15 -2.88 0.98 0.18 0.24 -2.65 -2.55 -1.51 -2.25 -1.73 -2.01
- - - - - - - - - - 1.12 -1.65 -1.5 0.37 -0.28 2.49 -0.48 3.19 -0.04 2.39 1.9 -0.16 - 0.25 - -1.35 -3.05 - -6.57 - - -6.61 -
- -7.09 - -6.33 -7.85 -5.68 -3.52 - -6.96 -3.55 2.28 1.1 0.13 -0.39 1.8 1.21 0.64 1.67 1.67 0.93 2.03 -2.04 -3.44 - -0.13 0.18 0.0 -3.59 -3.31 -1.73 -3.52 -3.24 -2.76
-6.16 -6.89 -6.03 -7.87 -8.4 - -6.11 -3.11 - -0.85 2.21 0.21 - 1.2 0.91 2.2 0.43 1.72 1.88 1.68 1.51 -4.34 -5.21 - -1.52 0.5 0.21 -3.41 -6.11 -5.54 -6.12 -3.33 -3.34
-5.14 -4.38 -5.03 -5.22 -5.51 - 0.62 -5.67 - -6.7 1.89 -5.02 -1.68 -2.9 1.01 1.81 1.0 1.47 2.45 1.96 2.38 -4.75 -3.73 -4.86 -1.04 -4.38 -2.81 -2.59 -2.38 -1.85 -2.11 -1.78 -2.0
- - - - - - -5.49 - - - 2.62 -1.24 0.63 -2.24 0.62 1.66 1.27 1.75 2.19 0.67 1.83 -3.02 -5.39 -4.07 0.7 0.43 -0.03 -7.43 -6.18 -3.98 -8.16 -6.81 -2.06
-4.78 -4.55 -4.59 -4.62 -4.0 -3.45 -3.37 -4.52 -4.3 -4.39 1.64 -2.86 1.4 -3.05 0.04 1.83 1.12 1.8 1.91 1.56 1.7 -3.07 -2.02 -0.8 0.83 -0.17 0.04 -2.07 -2.41 -1.78 -2.23 -1.57 -1.57
-3.49 -3.7 -4.14 -3.61 -4.23 -3.18 -1.34 -3.8 -4.69 -3.01 2.02 -1.24 -0.48 -0.88 -0.88 0.45 0.59 2.64 1.76 1.08 2.19 -0.45 -1.66 -1.77 -0.37 -0.02 0.33 -2.62 -0.98 -0.67 -2.17 -2.94 -1.14
-1.52 -1.85 -1.39 -1.28 -0.86 -1.03 -2.27 -0.64 -1.09 -1.4 1.6 -1.23 0.51 -1.28 -0.11 1.29 0.38 1.54 1.66 1.21 1.6 -1.37 -1.68 -1.36 0.25 0.29 0.42 -1.2 -1.53 -1.15 -1.14 -1.0 -1.22
-1.02 -1.26 -1.73 -1.38 -1.54 -1.59 -1.58 -0.82 -2.26 -1.8 1.45 -0.56 0.43 0.02 0.54 1.24 -0.24 1.84 1.85 1.39 1.57 -0.27 -1.48 -2.03 -0.13 -0.35 -0.28 -1.57 -1.49 -1.27 -1.51 -1.64 -1.43
- - - - - - -4.25 -4.02 -7.02 - 2.34 -0.19 -3.01 0.45 -1.84 1.91 0.07 2.66 1.64 1.62 1.87 -4.01 -4.55 0.88 -1.58 0.05 -0.22 -6.94 - - - - -6.92

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.