Heatmap: Cluster_16 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - -2.53 - - 0.88 3.96 -4.23 - 1.98 -3.7 1.78 - - -3.58 - - - - -2.23 - - 0.47 0.33 1.93 -2.09 -0.59 -3.65 - -4.43 -3.51
-4.53 -5.61 -1.56 -0.28 -0.31 -0.56 -1.24 1.19 1.31 3.06 -1.43 0.37 -2.43 1.86 0.58 -1.37 -1.1 -0.65 -3.77 -1.52 -1.66 -0.03 -1.27 -0.28 -0.55 1.09 0.99 -3.54 -3.3 -2.4 -5.96 -4.12 -3.1
-1.34 -1.01 -1.68 -1.23 -0.66 -1.06 -2.68 1.27 0.6 3.34 -2.43 0.49 -0.39 1.21 - -0.36 -5.44 -3.13 0.64 -2.3 -1.05 1.55 -3.91 -2.46 -0.23 1.28 0.85 - - - - - -
-2.35 -2.08 -2.39 -1.31 -1.38 -1.05 1.61 -0.38 0.31 -0.6 0.9 1.45 -0.48 1.49 -0.85 -0.21 -0.48 0.52 0.26 0.06 0.06 0.65 -0.78 -0.43 0.53 0.92 0.91 -3.28 -1.19 -0.37 -2.05 -1.75 -1.27
-2.52 -3.12 -0.29 1.01 1.1 1.52 -3.94 1.65 1.86 2.79 -4.45 0.5 -3.27 -1.65 - - -2.98 - -3.76 - -4.96 -5.83 -6.02 - -3.05 1.88 1.65 -1.93 -1.82 -2.58 -1.31 -1.54 -0.83
0.48 1.07 -1.83 -0.32 0.41 0.24 -1.34 1.41 2.37 1.25 -0.19 0.65 -1.45 0.24 -1.18 -0.4 -1.0 -1.59 -0.96 -1.27 -1.05 -2.14 -1.96 -3.74 0.5 0.95 0.87 -2.92 -1.13 -0.57 -2.97 -3.03 -0.67
-1.1 -1.55 -0.31 0.88 0.77 2.05 -2.81 2.05 2.35 2.69 -4.38 -1.58 -4.67 -2.92 -5.03 -5.33 -2.96 -3.19 -5.71 -5.5 -5.3 -2.75 -3.07 -1.53 -4.99 1.07 1.39 -4.3 -1.29 -0.39 -2.94 -4.11 -2.49
-2.77 -3.1 -2.53 -0.29 0.54 -0.74 -4.61 2.05 3.03 3.36 -1.15 -1.4 -3.14 -0.45 -7.03 -2.46 -4.72 -5.96 -4.48 -2.78 -5.51 -2.9 -6.15 -2.57 -5.0 1.21 1.17 - - -6.46 -7.9 - -8.02
-1.14 -0.88 -0.24 -0.11 -0.96 -4.61 0.38 -0.81 0.25 2.06 -0.34 0.8 -0.91 -0.69 1.25 -0.09 -0.66 -0.29 0.01 0.52 0.33 0.25 -0.21 -0.45 1.03 0.93 0.88 -2.57 -2.29 -1.69 -2.43 -1.36 -1.1
-3.06 -2.86 -3.41 -2.21 -1.44 -2.07 0.42 -0.04 1.51 0.99 -0.81 1.89 -3.17 1.8 -3.01 -0.96 -0.47 -1.68 -1.62 -2.56 -1.79 0.04 -4.63 2.26 -3.56 2.02 1.27 -3.22 -1.19 -1.31 -3.96 -3.35 -0.25
-0.44 -0.07 -0.43 -0.2 -0.58 -0.05 -0.03 -0.05 -0.28 1.35 -0.17 0.27 -0.36 0.33 -0.28 -0.06 -0.24 -0.17 -0.03 -0.13 0.12 0.34 -0.45 -0.29 -0.38 0.61 0.63 -0.33 0.21 0.12 -0.41 -0.76 0.13
-9.74 - -7.06 0.62 1.63 -4.74 - 2.93 3.19 0.51 - -0.44 - -2.06 -5.66 - -8.12 - - -8.76 - - - - - 2.06 2.28 -6.59 -5.64 -5.94 -4.6 -6.94 -
-2.35 -0.35 -2.55 - -2.99 - -1.71 - -2.08 - - 0.32 -3.05 -2.99 - - -1.13 - - - - -3.0 0.06 3.45 - 2.78 2.01 -0.78 0.55 0.31 -0.17 -3.08 0.97
0.67 0.99 -0.88 0.49 0.31 0.38 -1.09 0.94 1.64 -2.41 -0.66 2.33 -0.05 -0.61 -1.76 -3.48 -2.04 - -4.27 -6.66 -4.04 1.45 -0.58 1.35 -1.48 -0.18 -0.26 -2.67 -0.86 0.09 -3.06 -2.52 0.15
0.47 0.47 -1.24 -0.27 -0.33 0.41 -1.37 0.89 0.72 -1.66 -1.47 1.85 -0.49 -0.18 -1.19 -3.54 -1.22 - -5.06 -3.71 -2.98 1.34 0.5 1.86 -1.41 -0.11 -0.22 -2.02 0.3 1.06 -2.68 -1.96 1.13
0.03 0.21 -0.81 -0.46 -0.45 0.4 -0.14 0.18 1.2 1.15 -0.46 0.97 -2.66 0.89 -1.28 -1.55 -1.19 -0.34 -0.31 -0.84 -0.0 0.3 -1.6 -3.32 -1.15 1.15 0.77 -0.85 -0.08 0.66 -0.36 -0.67 0.43
- - - -5.33 -1.85 - - -0.78 2.47 -0.36 -0.73 0.06 1.64 0.03 -1.27 -0.08 -3.19 -0.58 -0.72 -0.69 -0.49 -1.17 0.44 -4.11 2.53 0.53 0.81 -0.2 -1.63 -4.87 1.63 -0.38 -5.52
0.47 0.8 -2.18 -1.37 -1.33 -3.7 1.77 -4.38 1.11 - - -1.82 -1.21 -4.01 - - -1.78 - - -5.43 - -3.93 -0.73 3.56 -3.3 -0.17 -0.13 -0.62 0.82 1.23 -0.97 -0.95 0.94
-0.81 -0.83 -0.53 0.1 0.21 0.22 0.17 0.48 1.6 0.84 -0.58 1.36 -1.68 0.55 0.25 -0.6 -1.81 -0.61 -0.86 -0.72 -0.8 -0.39 -1.25 -0.87 -1.08 1.33 1.1 -0.43 -0.34 -0.63 -0.66 -0.82 -0.55
-4.04 -4.03 -5.29 -0.29 0.21 -1.57 -4.04 1.79 3.69 2.26 -2.59 -1.74 -0.98 -2.55 -1.4 -3.68 -2.83 -3.8 -3.46 -4.97 -3.19 -5.22 - -8.93 -1.65 -0.45 1.21 -2.76 0.71 -0.22 -0.88 -1.3 -1.65
-1.12 -0.85 -2.03 -0.74 0.06 0.12 -0.48 0.61 2.58 -0.43 -1.06 0.38 -1.04 0.25 -2.0 -1.48 0.02 -0.98 -1.28 -1.31 -1.25 -0.39 -1.23 0.35 0.27 0.81 0.72 0.62 -0.06 -0.48 -0.18 0.19 -0.12
-0.24 0.85 -2.0 -0.26 -0.13 0.23 -0.14 0.89 2.42 3.12 -0.83 0.33 -2.65 -0.43 -5.89 -0.95 -3.59 -0.71 -1.77 -0.51 -1.47 -1.66 -3.72 -5.52 -2.69 1.27 0.88 -6.2 -4.38 -3.43 -4.41 -4.5 -5.02
-0.56 -0.15 -1.98 -1.19 -1.49 -1.81 1.04 1.56 0.95 3.61 -4.29 -3.78 - - - - -5.13 - - -4.45 - - - - - 2.42 2.42 - -6.38 - - - -
-5.08 -5.13 -3.24 0.04 -0.32 -3.71 -4.6 -0.06 3.18 0.21 - 1.4 -3.08 1.8 -2.01 - -6.54 - - - - -0.2 0.84 - -0.8 2.42 2.2 - -6.03 - - - -6.91
-1.77 -1.62 -1.68 0.03 0.58 1.56 -0.55 0.77 2.15 1.03 -3.8 0.92 -2.53 -0.15 -3.98 -4.19 -2.13 -4.79 -4.14 -4.75 -4.46 0.01 -1.08 2.64 -1.61 0.46 0.43 -2.07 -0.67 0.32 -1.54 -1.91 -0.57
-2.29 -0.49 -3.09 -2.21 -2.01 -2.16 1.18 -0.95 -0.06 0.22 0.26 1.01 -1.01 1.16 1.1 0.18 -0.78 0.68 0.55 0.98 0.64 -0.04 -0.04 0.18 -1.4 0.85 0.74 -3.42 -0.42 0.06 -2.53 -2.58 -0.29
-0.31 -0.1 -0.49 -0.27 -0.61 -0.33 -0.44 0.13 0.22 1.55 0.4 0.48 -0.35 -0.46 0.36 -0.47 -0.04 0.6 0.51 0.21 0.44 -0.11 0.15 -1.23 0.13 0.38 0.36 -0.91 -0.8 -0.61 -0.93 -0.77 -0.58
-0.72 -0.43 -1.14 -0.9 -0.65 0.05 -0.12 0.48 0.68 1.47 -0.16 0.46 -1.2 -0.27 -0.08 -0.51 -0.62 -0.44 -0.28 -0.14 -0.11 -0.92 -0.38 0.55 -0.63 0.66 0.54 -0.2 0.18 0.34 -0.07 -0.04 0.52
- - -10.58 -4.1 -3.22 -3.93 -8.52 -0.37 1.39 1.98 -2.89 0.26 -4.77 1.37 -6.05 -5.44 -5.63 -4.66 -5.76 -4.62 -5.31 -3.31 -5.71 -0.74 -4.43 1.7 1.76 1.11 2.23 0.63 1.67 0.95 -1.32
0.11 -0.47 -0.07 -0.47 -0.03 -0.13 -0.68 1.2 1.07 0.99 -0.95 2.01 -2.36 1.12 -1.38 -0.77 -2.3 -1.74 -1.5 -1.26 -1.62 1.71 -0.12 -1.98 -0.29 0.76 0.71 -1.81 -1.74 -1.04 -1.22 -0.33 -1.91
-2.75 -3.31 -0.39 0.25 1.07 0.79 -1.83 1.35 1.05 1.93 0.5 -0.27 -3.72 -0.89 0.05 0.14 -1.68 0.53 0.36 0.51 0.71 -3.39 -3.5 -4.11 -2.44 -0.38 -0.35 -0.64 -0.08 -0.05 -0.62 -0.61 0.38
-1.61 -2.11 -0.78 0.61 0.45 1.57 -1.08 1.4 1.68 2.47 -1.95 0.49 -1.35 -0.41 -3.28 -3.14 -2.11 -2.92 -3.22 -2.97 -3.13 -0.27 -0.81 1.37 -2.07 0.99 1.27 -4.08 -1.15 -0.3 -2.68 -3.87 -2.18
- - -9.9 -1.13 0.01 - -9.39 1.12 2.46 3.22 -2.95 -1.81 -5.79 1.69 -5.56 -4.25 -9.02 - -5.94 -6.0 -5.97 0.66 - -7.3 -3.12 2.38 1.95 - - - - - -
-3.97 -3.8 -3.48 -2.2 -1.1 -0.94 -3.02 0.42 1.39 -0.51 -5.7 1.09 1.51 1.88 -8.59 -9.16 0.23 -6.37 - -8.17 -10.46 2.77 -1.15 0.8 1.6 0.93 0.67 -4.45 -1.37 -0.94 -4.23 -5.11 -1.66
0.11 -0.06 -1.36 -0.31 0.35 0.2 -0.82 1.07 3.14 1.39 -2.81 0.83 -3.08 0.18 -4.63 -3.64 -1.81 - -4.25 -6.9 -4.06 -0.62 -2.64 -1.02 -3.01 1.44 1.64 -4.89 -0.07 -0.69 -4.46 -4.09 -0.86
-1.02 -1.21 -1.12 -0.72 -0.5 -0.44 -0.65 0.37 0.21 1.36 -0.14 0.27 -0.84 -0.65 0.31 0.11 -1.01 0.04 -0.14 -0.55 -0.16 -0.41 -0.95 -1.39 -0.08 0.65 0.82 0.58 0.62 0.32 0.59 0.64 0.0
-1.43 -1.46 -0.15 0.81 1.28 1.77 -0.6 0.6 1.96 1.03 -5.67 0.06 -0.08 -0.63 -7.85 -6.94 -0.24 - -8.69 -8.76 -10.72 -0.66 1.22 2.46 0.61 -0.38 0.32 -10.77 -5.58 -3.73 -9.27 -11.48 -5.15
-1.79 -2.36 -0.78 -0.18 0.25 0.61 -3.52 2.22 2.29 2.52 -5.95 -0.85 -1.69 -0.51 -3.35 -3.74 -1.51 - -6.95 -5.63 - 0.47 -4.27 -1.43 -1.19 1.61 1.55 -1.49 -1.65 -1.87 -2.2 -0.5 -0.47
0.38 - -0.34 2.1 -1.29 - - 3.51 2.75 2.63 - - - - - - 0.11 - - - - - - - - -2.78 -0.54 - - - - - -
- -2.16 -1.89 -1.96 -0.66 - -1.38 - 4.04 2.33 - - - -0.36 - - -4.53 - - - - - - - - 2.45 1.81 - - - - - -
-0.4 0.21 -0.97 -0.27 0.42 0.06 0.38 0.64 2.41 1.3 -3.1 1.13 -2.31 0.17 -3.53 -4.08 -1.95 -4.38 -3.87 -4.77 -4.5 -0.23 1.21 1.92 -0.91 0.39 0.37 -5.71 -0.96 0.05 -4.68 -6.5 -0.33
-0.68 -1.64 -4.92 -5.18 -3.18 0.78 -1.22 1.71 2.36 0.3 - -0.01 1.17 2.36 - - -1.9 - - - - 2.05 -0.66 0.95 - 1.32 1.1 - - - - - -3.3
-0.47 0.22 -0.74 -0.31 -0.64 0.12 0.71 -0.18 0.36 0.26 -0.67 1.03 -0.63 0.94 0.28 -0.26 -1.15 -0.7 -1.26 -0.32 -1.19 0.07 -1.22 0.97 -0.41 1.54 1.12 -1.19 -1.66 -0.75 -0.9 -0.38 0.07
-6.39 -4.47 -7.04 -3.5 -2.04 - -4.56 -0.94 2.24 0.67 -1.67 3.69 -6.6 1.66 -2.23 -4.6 -3.57 - -2.52 -5.61 -2.96 0.51 -1.65 -3.41 -1.98 1.64 1.79 - - - - - -
-0.89 0.52 -2.83 -0.11 0.36 -0.33 0.73 1.26 1.51 1.6 - -0.67 -0.65 0.12 -1.51 -2.01 -1.7 - - - -1.99 2.47 -0.6 -3.76 -0.13 0.26 0.2 -0.66 0.52 0.25 -1.23 -0.53 -0.88
- - - -2.41 -0.33 -1.77 - 1.57 3.84 2.24 - - - - - - -3.14 - - - - -3.71 - -0.86 - 2.31 1.84 -3.54 -2.63 - - - -2.51
-1.67 -2.74 -1.75 0.11 0.33 -0.91 -1.12 1.27 2.98 2.4 -2.34 -0.25 -1.99 -2.16 -2.3 -2.8 -1.29 -2.64 -2.26 -1.72 -1.56 -1.5 -1.62 -3.29 -1.03 1.24 1.51 -0.81 -0.71 -1.32 -1.34 -0.92 0.12
-1.55 -2.61 -3.25 -0.23 -0.49 -0.85 -0.8 1.09 2.36 2.57 -2.09 1.97 -4.74 0.84 -2.22 -2.31 -2.95 - - - -2.29 -1.91 -0.16 -4.94 0.13 1.63 1.91 - -3.06 -2.16 -3.97 -4.5 -2.7
-2.97 -1.69 -3.8 -0.38 0.01 -4.31 2.65 1.25 2.23 -0.38 -1.97 -1.9 -1.02 -5.3 - -1.68 -3.28 -2.74 -1.74 -3.81 -2.98 -4.23 -0.02 1.57 -0.84 2.39 2.19 -6.61 -6.42 -6.25 - - -
- - -4.05 -0.61 -0.63 - 2.27 -3.34 3.01 -1.62 -3.56 1.93 - -1.65 - - -0.34 -0.3 -1.68 - -2.52 -1.31 -0.33 1.04 0.04 2.17 1.45 -3.54 -2.08 - -3.55 - -3.36
- - - -5.81 -1.38 -1.86 - -1.24 0.99 -0.69 -2.03 3.87 -2.77 2.56 - - -3.78 -2.95 - -3.12 -3.09 1.16 - - 0.4 -0.56 -0.52 -5.11 0.91 0.15 - - -
-1.71 -0.71 -2.25 -0.45 -0.92 -0.65 0.46 0.02 0.34 0.54 -0.99 2.33 -4.07 1.66 -6.95 -1.45 -3.12 0.18 0.29 0.41 -0.23 0.49 -2.17 -3.56 -0.38 0.88 0.55 -0.68 -0.84 -0.31 0.79 0.42 -2.0
- -4.27 -1.12 0.88 0.53 0.02 -3.8 2.94 2.06 2.25 -3.85 1.63 -0.08 -1.06 - - - -1.53 -2.77 - - 2.35 -2.86 - 0.22 - - - - - - - -
-1.81 -4.49 -0.11 1.53 1.36 1.59 -3.33 2.26 2.54 2.63 -5.02 -0.29 - -2.64 -5.93 -3.85 -3.22 -3.86 - -7.02 -5.99 -6.87 -6.05 -5.01 -2.76 1.31 1.19 - - -5.37 - - -3.39
-1.49 -1.87 -1.65 -1.46 -1.01 -0.23 1.22 -0.15 1.09 -0.55 -2.11 1.2 -1.88 1.52 -4.63 -1.17 -0.99 -2.13 -2.09 -2.54 -2.48 0.73 0.45 1.78 -0.27 1.04 0.58 -1.59 -0.33 0.46 -1.49 -0.93 1.38
- - - -3.22 -1.97 -2.7 - -0.15 1.04 -0.19 -2.33 3.94 -4.6 2.7 -2.54 - -5.32 - -3.57 - - 0.44 - - -0.28 1.05 0.98 - - - - - -
-0.29 0.45 -0.41 0.29 0.05 -0.11 0.01 0.21 0.74 0.85 -1.91 1.5 -4.1 1.99 1.25 -1.24 -2.96 -1.33 -1.39 -1.11 -1.38 1.12 -0.76 -1.47 -2.27 0.29 0.98 -1.64 -1.29 -1.03 -1.09 -1.48 -0.03
- - - 0.57 1.02 -1.48 - 3.53 3.43 1.88 -2.28 -2.65 - 1.0 - - -6.96 - - - - - - - - -3.17 -0.77 - - - - - -3.62
- - - -2.35 -1.12 - - 1.53 4.02 1.7 - -3.55 - 0.85 - - - - - - - -2.32 - - - 1.89 1.14 -3.47 -0.72 -3.58 -0.96 -1.23 -1.92
-1.29 0.23 -3.31 -4.54 -4.08 - 1.46 -3.91 - -3.17 0.55 2.04 -1.56 1.96 0.56 1.61 -1.81 0.71 0.37 1.4 0.78 -1.31 - -2.31 -1.02 1.47 1.32 - - -5.19 - - -
-0.33 0.51 -4.13 -3.09 -2.22 - 2.09 0.85 3.21 - -0.31 -1.17 -5.24 1.72 - -4.25 -3.56 - -1.87 - - -1.2 - -3.41 - 2.57 1.8 - - - - -4.08 -4.14
- - - 0.14 -2.14 - - -0.45 4.23 -0.52 -0.85 -2.75 -2.8 - - - -3.97 - - - - - - -0.67 - 2.48 2.06 -3.67 - - -3.96 - -
- - - -6.24 0.37 - - 1.58 2.37 2.28 - -3.64 - - - - -5.48 - - -2.61 -3.69 - - - - 2.81 2.1 -0.53 -0.74 -1.71 1.26 1.48 -2.15
0.52 1.09 -1.19 -0.6 0.31 1.51 1.12 1.46 2.88 1.83 -2.67 0.21 -3.56 -1.02 - -5.37 -3.64 -7.35 -4.53 -3.79 -4.35 -3.08 -3.66 -7.67 -1.31 1.44 1.26 -5.48 -8.54 -5.03 -2.91 -1.54 -6.52
-1.72 -1.45 -0.4 0.96 0.7 0.62 -1.24 0.42 0.27 2.12 -1.07 -0.66 -0.69 -0.77 1.21 -2.37 -2.55 -1.44 -0.31 -1.15 -1.17 -0.16 -0.87 0.78 -0.95 1.03 1.05 -0.29 0.44 -1.17 -0.36 -0.76 -1.7
0.27 0.2 1.36 2.53 1.47 0.84 1.97 0.37 0.85 1.59 -0.86 0.97 -4.64 -1.2 -3.59 -1.73 -2.81 -1.05 -1.57 -1.46 -1.98 -1.0 -2.66 -4.73 -0.87 -0.24 -0.78 -7.4 -6.63 -7.41 -10.19 -9.67 -3.9
- - - -0.2 -2.17 - 2.46 - 3.2 0.05 -1.28 1.82 -0.26 - - - -0.87 - -2.2 -0.27 -1.24 -0.82 0.51 -1.43 1.03 1.44 1.04 -3.1 - - -3.26 - -
-4.51 -3.24 -3.01 -2.7 -2.26 -0.71 0.1 1.92 2.37 -0.08 -1.75 -3.06 -0.32 -0.62 - -0.56 -3.38 -0.91 -3.08 -2.15 -0.01 -3.15 -3.18 3.58 -3.02 -5.04 -6.5 -2.49 -1.31 0.66 -1.39 -1.37 0.01
-3.05 -2.8 -2.38 -1.73 -1.61 -2.46 1.5 -0.63 0.19 -0.83 0.98 1.61 -0.38 1.68 -1.18 -0.21 -0.55 0.53 0.05 -0.28 -0.26 0.98 -0.23 -0.37 1.03 0.81 0.88 -3.1 -1.29 -0.23 -2.12 -2.06 -1.44
-7.8 -5.44 -8.01 -2.63 -2.1 -2.87 -3.11 1.04 0.97 1.92 -0.45 -0.19 -4.46 0.06 -7.09 -1.69 -2.65 -2.06 -1.63 -1.35 -1.98 -0.15 -0.64 - -2.96 1.55 1.54 0.93 2.17 -0.24 1.19 0.9 0.31
0.02 -0.02 -0.71 -0.01 0.39 -0.09 1.5 1.47 3.26 -0.37 - -0.11 -2.75 0.77 - - -4.17 - - - - 0.29 -1.14 - -3.04 0.52 1.36 - 0.11 -1.58 - - 0.19
-7.22 -5.44 -2.67 -0.75 -0.82 0.14 -2.34 1.94 1.46 3.63 -1.8 0.21 -5.34 1.2 -0.04 -2.99 -2.93 - -2.93 -1.7 -2.27 -3.07 -0.55 -2.62 - 1.24 1.29 - - - - - -
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.