Heatmap: Cluster_353 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
0.84 1.85 -1.39 -3.1 -4.14 -2.94 2.43 -4.73 -3.96 -5.08 -6.86 1.13 -0.33 -1.36 -8.49 -6.26 -1.89 -8.42 -7.84 -9.91 -6.63 0.11 2.55 -0.12 1.46 -0.38 -0.89 -1.27 -0.38 0.65 -2.47 -2.17 1.42
1.96 1.73 0.85 -0.19 -1.99 -2.33 3.16 -3.15 - -2.87 -5.91 -0.09 -2.43 -0.62 - -2.03 -3.35 - - -4.04 -3.01 -2.48 -0.75 -1.2 -2.59 -1.05 -1.47 0.68 0.51 0.54 0.83 0.4 0.42
0.76 1.37 -0.91 -1.39 -1.7 -1.38 1.95 -1.4 -2.25 -2.35 -1.11 -1.4 -1.36 -4.39 -3.66 -2.9 -1.07 -1.51 -2.2 -1.83 -2.24 -3.92 -5.1 -6.23 -2.14 -4.39 -2.65 0.87 2.06 1.59 1.19 0.39 2.65
0.33 0.81 -1.21 -1.23 -1.69 -0.48 1.6 -1.75 -0.6 -0.95 -1.58 0.16 -0.27 0.9 -1.5 -0.96 -1.08 -0.57 -1.29 -1.47 -1.7 0.54 0.75 1.46 -0.47 -0.89 -0.37 0.36 1.13 0.61 -0.13 -0.49 0.88
0.98 1.2 -0.31 -1.21 -2.74 -2.94 1.48 -4.5 -5.67 -2.61 -1.29 0.56 -1.74 -1.64 -4.0 -2.79 -2.93 -1.89 -1.45 -1.62 -1.68 -2.02 0.09 -3.73 -1.69 -0.54 -0.58 -0.43 1.91 2.37 0.36 -0.89 2.47
0.33 0.9 -0.94 -0.75 -0.84 0.49 1.21 0.12 0.31 0.71 -1.26 0.43 -0.57 -0.21 -0.8 -1.45 -0.12 -1.92 -2.12 -1.59 -2.05 -0.5 0.66 -3.3 -0.1 -0.91 -0.16 -1.95 1.72 1.48 -1.33 -2.9 1.42
2.14 2.39 0.85 0.38 -1.24 -2.74 1.82 -4.97 -2.46 -2.04 - 0.27 -1.48 - - - -0.04 - - - - -2.76 1.64 - 1.92 -0.7 -0.53 -4.23 -0.42 1.13 - -4.27 0.84
-0.51 0.87 -1.84 -2.53 -1.71 -3.59 1.77 -5.26 -2.76 -0.76 -0.3 0.86 -2.9 -0.17 -0.02 -0.26 -1.21 0.18 -0.45 -0.42 -0.39 -1.34 0.16 -3.08 0.67 -0.7 -0.66 -2.9 1.34 2.1 -1.81 -3.9 2.15
1.46 1.61 -0.72 -1.51 -1.43 -1.62 1.76 -2.83 -1.98 -2.87 -3.24 0.87 0.67 1.07 -3.29 -2.98 -0.72 -4.27 -4.03 -3.3 -4.51 0.42 2.22 -2.08 1.05 -0.63 -0.43 -1.74 0.24 0.64 -0.93 -1.11 0.22
1.58 1.58 0.4 0.01 -0.71 -0.41 1.31 -0.23 -0.26 -0.77 -2.66 0.12 0.25 0.34 -3.24 -3.13 -0.95 -3.29 -2.61 -2.63 -3.31 0.39 0.72 -0.09 -1.19 0.36 0.54 -0.84 0.97 0.83 -0.24 -1.91 0.2
1.34 2.34 -0.16 -0.26 -0.88 -0.8 2.59 -2.15 -2.28 -1.88 -4.03 -0.58 -7.56 -2.8 -4.39 -2.83 -5.25 -3.94 -4.44 -4.87 -4.11 -3.69 -5.93 -3.51 -3.65 -1.85 -2.91 0.05 0.96 1.46 1.17 1.02 1.95
0.86 1.06 0.37 0.32 -0.17 0.17 0.23 -0.35 -0.42 -0.4 -0.49 -0.22 -0.16 -0.25 -0.86 -1.12 -0.78 -0.27 -0.54 -0.34 -0.45 0.02 -0.14 0.08 -0.49 -0.12 -0.01 0.02 0.77 0.55 0.04 -0.29 0.6
0.67 1.39 -0.89 -1.19 -1.29 -0.28 2.48 -1.27 -0.8 -1.22 -0.76 1.33 -2.05 0.03 -1.51 -0.4 -1.58 -0.45 -1.36 -1.03 -1.22 -1.28 -2.08 -0.87 -1.38 -1.84 -1.2 -0.27 0.97 1.57 -0.35 -0.43 1.1
0.53 1.29 -1.26 -1.35 -1.45 -0.65 1.41 -1.06 -0.57 -1.46 -1.69 0.32 -0.99 -0.2 0.9 -1.2 -0.43 -1.44 -1.6 -1.79 -1.65 -0.29 0.26 -0.71 -0.65 -0.1 0.02 0.61 0.73 1.01 0.65 0.47 1.31
0.57 0.77 -0.62 -0.44 -0.99 -0.29 1.19 -2.1 -2.55 -0.65 -1.3 0.67 -1.96 -0.65 -2.85 -3.72 -1.9 -1.97 -2.46 -4.21 -2.04 -0.53 -0.13 -2.99 -0.15 -0.73 -0.58 -1.88 1.69 2.3 -1.64 -1.41 2.74
0.4 0.73 -0.02 -0.49 -0.47 0.43 1.67 -0.81 -1.58 0.2 -1.22 1.09 -0.88 -0.39 -1.46 -1.67 -1.54 -1.92 -1.65 -2.32 -1.77 -0.27 -0.55 -1.75 0.95 -0.62 -0.61 -2.27 1.07 1.7 -1.86 -1.84 1.96
0.73 1.01 0.54 0.2 0.02 0.91 0.96 -1.41 -1.72 0.22 -1.81 0.26 -2.57 -1.58 -2.77 -2.45 -2.47 -1.7 -3.74 -1.48 -3.53 -0.68 0.31 -2.51 -0.52 0.15 0.38 -1.88 1.29 2.04 -2.01 -1.82 2.07
0.98 1.37 0.65 0.14 0.17 -0.32 -0.14 -0.4 -1.32 0.01 -0.49 -0.31 -0.2 -0.47 -0.53 -0.76 -0.87 -0.55 -1.26 -1.32 -0.59 0.12 -0.16 -0.39 -0.82 0.53 0.5 0.09 1.12 0.62 -0.26 -0.7 0.35
1.1 1.48 -0.68 -1.19 -1.57 -1.12 1.71 0.29 0.35 0.36 -4.23 0.17 -2.76 -1.42 -4.09 -5.47 -1.48 -5.67 -5.5 -5.74 -5.62 -2.12 -0.11 -3.16 -1.42 -0.08 0.14 0.04 1.48 1.6 0.6 -0.25 2.02
0.9 1.09 -0.77 -1.53 -1.59 -0.97 2.02 -1.37 0.34 -2.25 -2.6 0.31 -0.43 -0.12 -3.19 -3.87 -0.41 -4.26 -3.65 -6.06 -4.96 0.15 0.13 -0.83 0.14 0.21 0.35 -0.65 0.96 1.89 0.27 -0.46 1.38
1.14 1.4 -0.03 -0.34 -0.34 -0.96 1.69 -0.32 -0.81 -1.32 -1.67 0.29 -0.46 -0.94 -1.73 -2.77 0.17 -4.96 -2.57 -4.09 -3.14 -0.21 -0.22 -1.15 0.3 -0.35 -0.33 0.31 1.15 1.16 0.29 0.26 1.19
1.07 1.89 -0.91 -2.23 -3.25 -3.26 1.78 -3.62 -2.21 -3.31 -4.57 -0.19 -2.1 -1.6 - -7.22 -1.94 -6.05 -7.16 - - -2.28 -0.77 -3.86 -1.57 -0.11 -0.08 -0.83 2.05 2.55 -1.15 -1.73 2.64
1.52 1.66 -0.3 -1.2 -2.5 -3.14 1.55 -3.06 -2.49 -3.2 -1.63 -0.45 -0.33 -0.61 -1.8 -1.35 -0.11 -0.32 -0.53 -0.48 -0.31 -1.3 -0.73 -3.59 0.67 -0.93 -0.36 -0.75 1.25 1.75 -1.52 -2.54 2.05
1.51 3.05 -2.72 - - - 2.13 -4.0 -4.56 -2.77 - -0.16 -4.21 - - - -7.5 - - - - -0.09 -0.69 -3.4 - -0.38 -1.6 -2.36 0.2 0.18 -2.7 2.28 2.57
0.53 1.17 -0.97 -1.29 -1.57 -1.77 2.64 -2.92 -1.27 -2.07 -2.19 1.44 -1.98 0.83 -3.56 -1.17 -1.93 -2.72 -1.96 -2.84 -2.51 0.08 0.17 -5.32 -1.57 -0.6 -0.09 -0.77 1.56 1.55 -0.09 -0.98 1.15
2.87 3.43 1.63 0.82 -1.95 -0.97 2.63 -1.62 -2.81 -3.42 - - - - - - - - - - - - - 0.85 - -4.72 -0.67 - - - - - -
1.64 1.48 1.39 1.51 0.67 1.96 0.17 -0.4 -1.03 0.66 - -4.96 - - - - -7.67 - - -6.05 - -6.89 - - - -0.24 0.45 -3.11 0.88 1.97 -1.03 -1.7 1.7
1.2 1.85 -0.36 -0.4 -1.19 0.65 0.74 -1.91 -0.89 -2.0 -1.88 0.09 -3.52 -1.15 0.04 -1.45 -1.82 -2.21 -5.64 -3.12 -2.67 1.78 -2.03 - -0.71 0.84 0.57 0.07 1.24 1.16 -0.2 -1.19 1.16
1.23 1.57 0.21 -0.63 -1.17 -0.98 0.4 -1.72 -2.16 -2.23 -1.09 0.19 -0.78 0.75 -0.06 -0.93 -1.26 -1.65 -0.85 -1.38 -1.53 0.49 0.7 -0.43 0.56 0.26 0.1 -0.15 0.24 0.63 0.5 0.16 0.86
0.5 0.85 -3.31 -2.51 -2.55 - - -2.11 - - -1.39 -0.44 - - -0.19 - -8.12 - - - - 2.23 - - -3.85 -4.97 -1.95 -0.73 0.64 2.91 0.25 -0.66 3.4
1.1 1.43 -0.13 -0.41 -0.43 -0.51 0.65 -0.29 -0.14 -0.21 -1.06 0.24 0.33 0.01 -1.52 -1.4 -0.72 -1.13 -1.43 -0.96 -0.89 0.68 -0.94 -0.49 -0.65 -0.05 -0.16 0.16 1.02 0.69 0.56 -0.49 0.56
1.42 1.69 0.37 -0.21 -0.58 -0.43 1.98 -1.05 -2.17 -2.07 -4.99 0.42 -1.67 -0.86 -4.44 -3.47 -2.55 -4.49 -5.05 -4.8 -6.5 -1.91 1.0 1.7 -1.45 0.54 0.17 -1.59 0.59 1.75 -1.35 -2.68 0.83
0.03 0.58 -1.01 -1.42 -0.9 0.01 2.08 -0.64 -0.44 -1.48 -3.39 0.37 -0.61 -0.25 -2.73 -2.46 -0.83 -3.01 -2.76 -3.05 -2.7 -0.07 0.87 -1.62 -0.8 0.37 0.44 -1.47 1.98 1.73 -0.25 -2.14 1.47
1.22 0.59 1.09 -0.1 -0.43 -1.69 1.55 -1.09 -0.45 -0.91 -2.36 -1.4 -1.55 - -0.85 -0.19 -0.97 -4.78 -3.89 -1.63 -2.6 -0.48 0.27 0.56 0.85 -0.68 -0.57 -0.26 1.0 1.2 0.0 0.33 1.61
0.88 1.46 0.03 -0.21 0.04 0.41 2.04 -1.05 0.0 -1.29 -0.38 0.72 -1.36 -0.86 - - -1.97 -2.79 - - - -1.29 - - - -0.69 -0.28 -0.14 1.22 1.14 -1.56 -1.24 2.67
1.05 1.54 -0.26 -0.26 -0.91 0.04 0.66 -1.31 -1.3 -0.64 -1.28 -0.04 -0.47 -0.3 -1.44 -1.31 -0.8 -1.0 -1.76 -1.61 -1.46 0.33 -0.05 -1.17 -0.17 0.31 0.3 -0.2 1.04 1.58 -0.03 -0.63 1.28
0.96 -0.27 0.15 -1.3 -1.05 -1.81 1.24 - - - - 1.31 -4.74 - - - -2.2 - - - - -0.3 -0.99 - -1.77 -0.89 -1.16 1.19 1.7 1.93 0.96 0.77 2.86
0.95 1.31 -0.56 -0.77 -1.47 -1.35 1.89 -1.39 -1.18 -0.9 -1.08 0.95 -0.78 0.01 -2.58 -1.13 -0.86 -1.43 -2.05 -2.23 -2.08 -0.19 -1.42 -3.58 0.37 0.53 0.68 -0.59 1.87 1.18 -0.22 -0.95 0.74
1.79 2.14 0.53 -0.22 -1.65 -1.24 1.54 -2.77 -3.54 -1.15 -1.15 0.44 -1.24 -1.69 -4.12 -2.65 -2.68 -1.88 -1.62 -1.83 -2.04 -1.83 -0.33 -2.9 -1.34 -1.19 -1.25 -0.93 1.4 1.83 -0.05 -1.18 1.94
0.96 1.48 -0.67 -0.82 -0.25 0.79 1.61 -0.53 0.43 -1.2 -0.97 0.67 -0.56 -0.14 -3.4 -1.62 -0.58 -1.97 -1.81 -2.62 -2.03 0.11 0.47 0.05 -0.56 -0.89 -0.39 -3.15 1.12 1.67 -2.03 -3.49 0.97
0.28 0.44 -0.29 -0.39 -0.99 -1.28 1.32 -2.17 -2.1 -0.99 -2.79 0.52 0.43 -0.71 -1.66 -2.54 -0.4 -3.19 -3.94 -4.39 -4.2 0.2 -0.22 -1.54 1.25 -0.14 -0.13 0.53 1.07 1.0 0.45 -0.2 2.35
0.47 0.61 -2.6 -5.08 -5.15 -4.51 1.3 -4.25 -6.04 - -0.51 1.28 -0.71 1.09 -3.04 -1.81 -0.74 -2.2 -3.07 -3.0 -1.9 -0.63 -3.9 0.2 1.49 -0.14 -0.13 0.14 0.93 1.87 0.34 0.56 1.93
1.3 2.06 -1.73 -1.5 -2.0 -1.75 -0.01 -1.18 -1.12 0.82 - -2.82 -0.97 -2.55 - - -0.73 - - -6.23 - -3.31 -0.63 - -1.83 -1.51 -0.72 0.41 2.52 1.75 0.38 -0.5 2.49
2.54 2.67 1.24 0.57 -2.02 -2.67 2.27 -2.59 -2.37 -2.97 - -2.14 -10.6 -5.13 - - -5.99 - -9.04 - -11.4 -0.57 -2.84 -4.24 -1.52 -0.88 -1.4 -2.05 -1.02 0.42 -1.67 -3.02 2.66
1.21 2.21 -1.27 -2.41 -3.89 -2.81 1.91 -4.65 -3.64 -4.93 -6.33 0.54 -0.73 -1.94 - -7.62 -1.71 - - -7.62 -8.76 -0.27 2.13 -0.06 0.94 0.02 -0.48 -0.72 0.19 1.26 -1.79 -1.47 2.02
0.56 0.68 -1.98 -2.1 -1.67 -1.65 0.91 -2.94 -2.69 -1.66 1.0 1.22 -0.33 0.81 -1.17 -1.06 -0.68 0.24 -0.25 -1.15 -0.03 -0.94 -2.57 -2.7 0.86 -0.05 -0.11 -1.45 0.64 1.33 -0.51 -0.98 2.08
1.09 1.57 -0.23 0.2 -0.15 0.01 1.17 -1.24 -1.45 -0.98 0.44 -0.76 -0.02 -0.7 -0.78 -0.69 0.36 0.08 0.04 -0.25 -0.47 -0.34 -0.98 -2.21 -0.04 -0.98 -0.43 0.33 0.56 0.11 0.43 0.25 -0.48
0.61 0.84 -1.42 -0.85 -0.48 -0.42 1.31 -0.13 0.88 -0.44 -5.3 -0.35 -3.71 -0.52 -8.52 -5.02 -5.46 -6.44 -6.96 -6.03 -6.58 -2.2 -1.31 -3.22 -2.84 -0.4 -0.13 -1.2 2.55 2.43 -0.19 -3.24 2.15
0.95 1.38 -1.99 -3.17 -3.27 -5.2 2.55 -4.0 -4.68 -3.93 -0.62 0.55 -1.25 -1.24 -1.06 -0.23 -0.4 -0.73 -0.5 -0.43 -0.66 -0.98 0.09 0.23 -0.71 0.28 0.86 -2.7 0.95 1.85 -1.68 -2.41 0.72
-0.3 1.17 -1.9 -2.3 -1.79 - -4.6 -1.99 -0.33 -0.06 - 1.62 -4.62 0.92 - - -3.61 - - - - 0.33 -2.08 -3.79 -0.7 -3.01 -1.67 -4.86 1.52 2.93 -4.76 - 3.15
1.46 2.25 1.33 0.91 0.52 -1.51 0.19 -3.33 -2.35 -2.28 -2.96 -0.98 -0.04 -0.56 -6.89 -3.52 -0.26 -3.23 -4.25 -4.85 -4.63 0.2 0.36 0.32 -1.72 0.27 0.64 -1.97 1.28 1.2 -0.36 -5.06 0.74
1.8 1.36 1.08 0.43 0.51 1.38 1.23 -0.74 -0.4 -1.06 - - -2.3 -5.33 -3.74 -2.61 -1.91 -3.67 -5.36 -3.1 -2.58 -1.2 -1.64 -0.06 -2.97 -0.16 -0.31 -0.29 0.26 1.12 -0.48 -2.87 2.48
1.32 2.16 -1.45 -2.81 -4.61 -3.92 2.32 -5.26 -5.33 -6.18 -6.31 0.72 -1.41 -2.68 - -7.49 -1.87 - - -9.08 - -1.77 0.44 -3.09 -0.11 0.76 0.55 -1.08 1.4 1.99 -0.42 -0.22 1.75
1.45 1.56 0.35 0.06 -0.45 0.02 0.51 -1.95 -1.47 -0.06 -3.32 -0.26 0.87 -0.24 -0.51 -3.15 0.01 -4.18 -3.39 - -3.96 0.35 0.82 0.29 -0.98 -0.22 0.31 -2.0 1.6 1.0 -1.11 -2.66 0.86
-0.07 0.85 -0.95 -0.76 -0.98 0.1 0.95 -1.01 -0.45 -0.39 -0.62 0.24 -0.54 0.89 -1.95 -0.53 -0.49 -0.54 -0.36 -0.61 -0.83 0.57 0.51 0.4 -0.56 -0.5 -0.11 0.19 0.8 0.85 0.1 0.0 0.69
0.15 0.72 -1.17 -0.85 -0.75 0.51 0.95 -0.98 -0.66 -0.37 -0.91 -0.47 -1.39 0.51 -3.55 -0.71 -0.93 -1.08 -1.36 -0.98 -1.59 0.39 0.47 0.48 0.2 -1.33 -1.07 -0.36 1.41 1.86 -0.2 -0.38 1.38
0.16 1.4 -3.37 -4.31 -5.42 -4.08 2.12 -8.41 -5.98 -6.46 -1.3 1.22 -0.93 -0.41 -3.98 -1.4 -1.27 -1.83 -2.09 -3.01 -2.65 -0.4 1.25 -0.83 0.17 0.26 0.02 0.11 1.56 1.38 0.32 0.34 1.47
1.13 1.6 -0.02 0.07 -0.38 -0.32 0.27 -0.65 -0.9 -0.33 -1.64 0.03 -0.38 -0.08 -2.19 -3.42 -0.57 -1.17 -1.71 -2.16 -2.47 0.28 0.18 -1.94 -1.85 0.13 0.22 0.28 1.26 1.37 0.69 -0.08 0.93
1.44 1.96 -1.17 -1.63 -1.55 -0.38 2.38 -0.87 0.78 -2.08 -5.81 0.99 -1.59 -2.64 - - -2.22 - - - - -2.79 -0.15 - -0.13 -0.11 0.23 -4.15 1.17 2.25 -2.05 -3.09 1.4
1.62 1.23 0.65 -0.97 -0.91 -3.66 2.24 -0.12 0.1 -4.55 - -0.65 -0.7 - - - -2.97 - - - - -2.13 0.42 0.75 -2.42 -0.05 -0.58 0.3 1.14 -0.3 -4.54 -2.06 2.84
2.33 1.88 1.01 -0.06 -1.29 -0.24 1.69 -3.68 -2.23 -3.25 -8.58 -0.64 -2.01 -3.33 - - -2.78 - - - - 0.74 -3.57 -1.37 0.67 -5.71 -6.24 -2.43 0.81 1.39 -1.4 -2.37 2.68
1.59 2.1 1.23 -1.15 -0.24 -0.04 2.88 -0.59 -0.47 -1.92 -5.17 - -5.26 - - - -1.85 - -1.91 - - -2.56 -2.74 0.83 -4.17 -2.58 -3.86 0.16 1.2 0.09 -1.65 -1.3 1.97
-0.79 0.74 -3.04 -1.24 -1.04 -1.73 -0.63 -1.73 0.18 -0.29 -6.46 1.18 - -2.25 - - -6.99 - - - - -1.85 -1.16 -5.75 -0.51 -1.26 -1.09 -0.15 2.24 2.62 0.04 -0.4 3.02
1.37 0.95 0.19 -0.99 -2.37 -2.17 1.65 -4.78 -5.15 -5.15 -1.11 -0.61 -1.17 -2.43 -6.68 -1.6 -0.18 -2.85 -2.13 -3.78 -3.16 0.69 -3.64 -1.37 0.83 -5.5 -3.76 -2.16 1.24 1.85 -1.11 -1.91 3.14
1.67 1.94 0.55 0.13 -1.01 -1.08 1.88 -0.49 -0.77 -2.33 -2.09 -0.78 -0.3 -1.39 -3.48 -3.39 0.05 -3.62 -2.78 -2.49 -2.55 -1.21 -1.68 -2.4 -2.35 -0.28 -0.05 0.51 0.58 0.89 0.99 1.17 0.62
1.14 1.18 0.31 -0.23 0.19 0.38 1.74 -2.0 -2.59 -0.42 -6.3 0.53 -1.45 -0.53 -6.95 -8.62 -2.65 - - -8.63 - 0.22 -0.46 -0.98 -0.72 -0.1 -0.45 -0.17 1.44 1.29 -0.17 -0.25 2.12

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.