Heatmap: Cluster_452 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-2.95 -3.28 -3.79 -4.65 -5.0 -5.23 -0.29 -7.23 -6.38 -8.67 0.55 0.01 -0.5 -1.66 1.98 2.31 -0.61 1.11 1.44 1.03 1.41 0.36 -1.16 -0.03 -1.09 -1.17 -1.25 -0.2 -0.16 -0.0 -0.63 0.25 -1.05
-6.31 -3.94 -6.15 -7.86 - -6.23 -2.16 -6.84 -8.48 - -1.28 -0.15 1.28 0.34 2.69 0.44 0.62 -0.85 0.39 0.29 -0.28 0.91 1.93 -1.3 -0.27 0.43 0.27 -1.27 -0.75 0.58 -0.5 -0.44 -0.1
-1.1 -1.6 -3.54 -3.4 -2.85 -4.21 0.6 -4.87 -4.58 -5.49 0.51 0.17 0.37 0.41 1.56 1.28 0.48 1.46 0.54 0.34 0.27 0.29 0.35 0.82 0.37 -0.4 -0.19 -0.42 -0.2 -0.39 -0.21 -0.91 -0.68
-3.46 -2.25 -3.11 -2.35 -2.99 -1.72 0.16 -3.53 -4.42 - 0.16 -0.33 0.55 0.29 1.52 0.43 0.38 0.8 0.32 0.62 0.25 -0.05 -0.04 0.51 -0.11 -0.03 -0.04 0.46 0.6 0.94 0.48 -0.15 0.61
-3.04 -2.64 -4.72 -6.27 -5.96 -5.62 0.22 -4.39 -3.84 -5.09 0.36 0.02 0.9 -0.02 2.19 0.95 0.43 0.34 0.59 0.1 0.72 0.19 0.73 0.91 0.89 -0.09 0.11 -0.98 -0.27 -0.14 -0.44 -0.77 -0.5
-5.27 -5.2 -3.61 -4.34 -2.98 -2.95 0.43 -3.45 -3.62 -6.2 1.16 -0.23 0.6 -0.17 1.6 1.05 0.12 1.29 1.08 0.92 1.18 -0.81 -0.17 0.07 0.22 -0.54 -0.37 -0.29 0.05 -0.11 -0.14 -0.39 0.03
-2.47 -2.89 -3.44 -4.6 -4.07 -4.5 -1.04 -2.61 -2.55 -4.21 0.82 0.0 1.6 0.71 -0.77 1.28 0.85 0.48 1.44 1.43 0.96 0.08 0.27 -0.04 -0.31 -0.67 -0.39 -0.59 0.03 0.1 -0.57 -0.4 -0.08
-1.77 -2.46 -1.86 -2.05 -2.56 -2.07 -1.33 -3.08 -2.44 -2.53 0.71 -0.18 0.21 -0.4 -0.0 0.64 1.45 0.57 0.49 1.2 0.61 -0.54 -0.13 -1.06 -0.35 0.43 0.74 0.26 0.68 0.43 0.39 0.37 0.74
-1.86 -1.58 -1.91 -1.28 -1.41 -0.9 -0.71 -1.78 -1.7 -1.15 0.51 -0.08 0.29 -0.46 1.45 1.56 -0.39 1.0 0.84 0.95 0.88 -0.26 -0.48 -0.96 0.92 -0.63 -0.38 0.19 -0.27 -0.54 0.23 -0.01 -0.69
-1.75 -1.75 -1.48 -2.3 -1.76 -2.05 -0.9 -2.25 -1.8 -2.19 1.01 -0.64 0.79 -0.85 0.65 1.33 0.06 1.53 1.48 1.42 1.51 -0.13 0.03 -0.2 0.13 -0.7 -0.74 -0.89 -0.7 -0.3 -0.77 -1.04 -0.61
- - - - - - - -4.46 - - 1.6 -1.61 -2.34 - 2.99 2.8 -2.01 -0.86 1.59 0.55 1.12 -0.29 -2.72 -3.85 -0.51 -0.12 0.24 -2.57 0.03 -0.57 -1.72 -1.3 -0.59
-4.43 -5.13 -5.56 -5.81 -6.56 -4.96 -0.34 - -6.56 - 1.07 -0.07 0.6 0.85 1.3 1.76 -0.03 0.91 1.67 1.69 1.67 0.35 -0.84 0.2 0.25 -0.27 -0.44 -2.71 -1.78 -1.76 -1.81 -2.44 -1.19
-5.58 -3.79 -6.83 -7.11 -2.52 -4.66 -1.78 - - -4.8 0.21 -0.98 0.64 -0.59 2.1 1.26 0.57 -0.78 0.83 0.71 1.49 0.79 1.63 0.6 0.21 -0.33 0.07 -0.93 -0.7 -0.17 -0.1 -1.22 -0.37
-1.15 -0.82 -1.58 -1.56 -1.25 -0.8 0.73 -1.18 -1.24 -1.21 0.5 0.7 1.0 0.98 -0.38 0.41 0.5 0.57 0.16 0.11 0.11 0.68 0.69 0.93 0.22 -0.37 -0.01 -0.84 -0.46 -0.32 -0.62 -1.03 -0.34
-3.38 -3.95 -4.58 -5.74 -4.18 -3.3 -2.33 -2.58 -3.63 -2.96 0.63 -1.04 0.27 -0.55 1.82 2.03 0.1 1.16 1.08 0.96 1.16 -0.22 -0.89 -0.28 0.18 -0.34 -0.37 -0.13 0.11 -0.08 0.1 0.3 -0.42
- -6.44 -9.16 - - - -9.36 - -8.16 -6.99 1.07 -0.83 0.66 -0.32 2.48 1.93 -0.76 0.99 1.2 0.86 1.04 -2.11 -3.25 0.54 0.35 -0.82 -0.69 0.34 -1.82 -1.18 0.68 0.79 -2.28
-1.08 -1.51 -1.13 -1.22 -0.92 -1.17 0.18 -0.96 -1.55 -1.37 0.12 0.41 1.15 1.23 -0.32 0.27 0.33 0.34 -0.5 -0.09 0.03 0.89 0.56 0.87 0.05 -0.1 0.08 -0.25 -0.1 -0.11 -0.02 -0.35 0.15
-5.56 -4.08 -5.76 -5.32 -5.36 -5.42 -1.2 -6.22 -4.61 -2.89 1.18 0.3 0.09 -1.26 1.22 2.14 -0.83 1.41 1.66 0.71 1.6 -1.78 -0.41 -2.54 1.01 -0.62 -0.13 -0.78 -0.21 -0.07 0.03 -0.39 -1.1
-1.13 -1.94 -0.89 -1.41 -1.26 -1.96 0.58 -1.71 -2.66 -2.74 0.1 -0.73 0.09 -0.32 1.86 0.97 0.66 1.18 0.51 0.98 0.73 0.3 0.24 -0.21 -0.15 -1.08 -0.69 -0.15 -0.17 -0.16 -0.44 -0.29 0.05
-5.62 -5.38 -6.33 -6.0 -6.34 -7.26 -1.75 - -8.51 -7.53 1.17 -1.52 1.02 -0.49 0.9 1.8 -0.14 1.53 2.08 1.64 2.03 -1.37 -0.81 -1.16 -0.06 -0.89 -0.58 -1.19 -1.01 -0.8 -0.73 -0.97 -1.01
-1.69 -2.03 -1.31 -1.48 -0.89 -0.95 0.19 -2.75 -2.17 -2.95 0.58 -0.13 0.47 0.4 0.83 1.44 0.17 1.11 0.57 0.73 0.6 0.17 -0.28 0.98 0.54 -0.38 -0.16 -0.46 -0.51 -0.51 -0.37 -0.49 -0.37
-7.42 - - - - - -1.52 - -4.52 - -0.09 0.18 -0.42 0.29 1.99 1.54 0.1 0.59 1.39 0.94 0.97 -0.19 -1.56 0.19 -0.95 -0.36 -0.35 0.34 0.32 0.47 0.71 0.75 -0.1
-6.35 -5.02 -7.69 -6.05 -7.19 -7.5 -2.84 -7.37 -7.23 -6.94 0.36 -1.38 0.67 -0.33 1.7 1.75 -1.42 1.47 1.89 0.91 1.69 -0.2 0.79 -2.7 0.19 -0.58 -0.66 -0.02 -0.8 -0.41 0.02 -0.02 -0.64
-4.39 -4.18 -4.14 -4.96 -3.32 -5.69 -0.47 -3.95 -5.38 -2.44 0.72 0.52 0.94 -0.08 0.97 1.41 0.54 0.52 1.42 1.49 1.67 0.35 0.57 0.27 0.13 -0.37 -0.18 -1.29 -1.07 -1.03 -1.02 -1.14 -0.87
-1.39 -1.1 -2.45 -2.6 -3.06 -2.46 -0.57 -0.97 -1.52 -1.57 0.33 0.39 0.87 0.24 0.26 1.38 -0.11 0.59 0.29 0.48 0.55 1.1 0.18 1.32 0.28 -0.18 0.08 -0.46 -0.21 -0.17 -0.46 -0.35 -0.3
-3.21 -3.59 -3.74 -3.7 -3.51 -3.53 -0.92 -4.63 -4.86 -3.68 0.79 -0.7 0.22 0.18 1.86 1.67 -0.87 0.93 1.22 1.7 1.24 -0.56 -1.25 -0.07 -1.4 -0.44 -0.78 0.17 0.2 0.04 0.01 -0.13 -0.04
- - - -10.58 - - -9.9 - - - 0.63 -1.64 -0.31 -2.52 2.94 1.88 -0.8 0.71 1.5 0.96 1.16 -2.52 -1.53 -3.96 -0.84 -0.3 -0.25 0.57 -1.62 -0.82 0.95 0.8 -0.47
-5.37 -5.73 -6.93 -5.97 -6.59 -7.76 0.39 -8.39 -7.26 -8.52 0.73 -0.79 -0.6 0.63 1.31 2.15 -0.49 1.2 1.25 2.11 1.32 -0.15 -0.68 -0.57 -0.66 -1.21 -1.54 -0.39 -0.38 -0.7 -0.5 -0.46 -0.21
-3.46 -3.42 -4.36 -5.31 -5.51 -5.02 -1.35 -5.4 -4.7 -4.4 0.9 -0.07 0.54 0.5 0.72 1.96 0.19 1.3 1.37 1.33 1.45 -0.56 0.44 0.26 -0.09 -1.07 -0.99 -0.67 -0.21 -0.31 -0.54 -0.87 -0.22
-5.92 -5.55 -6.12 -9.26 -7.59 - -1.23 -8.32 -8.88 - 0.66 -0.57 0.89 0.1 0.74 1.8 0.02 1.35 1.85 1.23 1.55 -0.17 0.1 -0.29 0.19 -0.75 -0.3 -1.0 -0.19 -0.15 -0.3 -0.65 -0.53
-1.22 -1.46 -1.62 -1.66 -1.46 -1.47 -0.52 -1.93 -2.4 -2.05 0.75 -0.46 0.31 0.13 -0.38 0.74 0.7 1.0 0.98 0.71 1.04 -0.07 0.09 0.11 0.59 -0.07 0.05 -0.23 0.23 0.2 -0.19 -0.28 0.59
-3.91 -3.87 -6.0 -5.03 -6.55 -5.26 -1.29 -4.95 -6.06 -6.3 -0.01 -0.14 0.45 -0.64 1.54 0.63 1.21 0.6 0.72 0.55 0.83 -0.59 0.68 -0.14 0.65 0.41 0.69 0.38 0.39 0.38 0.35 0.1 0.36
-1.4 -1.9 -1.79 -2.03 -1.87 -2.38 0.52 -2.8 -3.53 -2.34 0.57 1.01 1.3 0.91 0.01 1.09 0.81 0.51 0.55 0.52 0.59 0.96 1.17 -0.03 1.57 -1.04 -0.73 -1.98 -1.79 -1.59 -1.66 -2.24 -1.7
-5.75 -5.1 -5.22 -5.5 -5.65 -4.34 -5.57 -3.8 -3.97 -3.01 0.57 0.08 -0.45 -2.71 2.36 1.65 -1.46 0.88 1.53 0.56 1.23 -0.15 -2.58 -2.23 0.15 -0.14 -0.11 0.63 0.59 0.16 0.63 0.52 -0.84
-3.43 -3.9 -3.01 -2.86 -4.69 -1.56 0.21 -5.58 -2.35 -4.29 0.04 -0.4 0.71 -1.56 1.77 0.59 0.54 0.94 -0.33 0.84 0.57 0.32 -0.11 0.69 0.28 0.07 -0.03 0.16 0.34 0.5 0.16 0.18 0.66
-2.78 -5.19 -2.7 - -3.13 - 0.45 - - - 1.39 1.05 1.67 0.26 0.44 1.48 0.84 -0.61 1.13 0.28 1.25 0.96 -0.3 -0.94 1.94 -1.14 -0.73 -1.34 -3.34 -3.65 -1.4 -0.93 -3.2
-1.82 -2.19 -2.32 -2.43 -1.98 -1.65 -0.73 -2.54 -2.42 -3.03 0.89 -0.02 0.8 0.16 0.29 1.58 -0.04 1.0 1.06 1.12 1.07 0.52 0.31 0.78 0.22 -0.23 -0.19 -0.47 -0.54 -0.73 -0.53 -0.85 -0.58
-7.9 -5.85 -9.92 -5.2 -7.62 - -0.28 - - -7.38 0.44 0.79 -0.41 0.45 2.08 1.07 -0.25 0.78 0.81 1.15 0.79 0.77 0.77 0.06 0.2 -1.04 -0.75 -0.28 0.26 0.05 0.06 -0.39 -0.31
-1.43 -1.44 -2.72 -3.86 -2.7 -3.26 0.23 -2.28 -1.74 -2.96 -0.27 -0.06 1.01 -0.61 2.4 0.49 0.17 0.49 -0.15 -0.16 0.58 0.42 0.99 1.28 1.09 -0.61 -0.62 -1.3 -0.52 -0.43 -0.55 -1.06 -0.36
-2.54 -2.34 -1.83 -1.33 -1.9 -1.82 0.19 -3.19 -2.73 -3.42 0.64 0.26 0.44 -0.34 1.58 0.95 -0.09 1.2 0.85 0.45 0.79 0.65 0.2 1.16 0.28 -0.35 -0.21 -0.41 -0.97 -0.8 -0.62 -0.23 -0.34
-2.11 -2.08 -1.99 -2.78 -1.4 -1.71 -0.21 -1.19 -0.89 -0.69 0.71 0.39 0.09 0.22 1.42 0.73 -0.18 1.12 0.93 0.2 0.61 0.34 0.16 -1.1 0.54 -0.58 -0.44 -0.15 0.16 0.22 0.02 0.04 -0.14
-7.08 -5.13 -5.92 -6.89 -5.52 -7.46 -0.48 - -8.93 - 0.61 0.79 -0.26 0.88 2.06 1.58 -0.69 1.05 0.79 0.89 1.02 0.75 0.58 -0.03 0.02 -1.02 -0.8 -0.49 -0.04 -0.34 -0.37 -0.54 -0.67
-2.55 -2.8 -3.62 -4.13 -3.13 -3.21 -0.63 -3.55 -3.66 -4.43 0.72 -0.16 1.38 -0.11 0.8 1.28 0.15 0.96 1.5 1.19 1.25 0.52 0.55 0.9 0.5 -0.43 -0.38 -1.19 -0.92 -0.82 -0.94 -1.05 -1.09
- - - -8.01 - - -6.32 - - - 0.64 0.24 -1.24 -7.26 2.34 2.46 -1.39 1.08 1.49 0.68 1.63 -0.03 -2.1 -3.82 -1.73 -0.39 -0.09 -1.49 0.51 0.71 -0.67 -1.13 0.55
-1.52 -0.65 -1.92 -0.97 -1.59 -2.0 -1.49 -0.5 -0.55 -0.61 0.69 0.0 0.97 0.47 0.78 0.58 0.99 0.74 0.04 -0.34 0.27 1.1 0.07 -1.4 1.39 -0.51 -0.4 -0.4 -0.45 -0.37 -0.29 0.02 -0.58
-0.66 -0.44 -1.72 -2.19 -2.35 -1.65 0.9 -2.32 -1.85 -1.99 0.3 0.47 1.36 0.39 -0.46 0.65 0.86 0.39 0.39 0.14 0.16 0.93 0.93 1.05 1.3 -0.73 -0.34 -2.01 -0.95 -0.5 -1.3 -1.66 -0.68
-1.96 -2.29 -2.11 -1.94 -2.16 -2.84 0.34 -3.76 -4.0 -3.42 0.64 0.07 0.77 0.29 1.19 1.29 0.32 0.7 0.66 0.21 0.81 0.23 -0.51 0.67 0.93 0.07 0.02 -0.03 -0.12 -0.36 -0.42 -0.44 -0.05
-3.26 -2.39 -4.53 -3.14 -3.41 -3.51 0.38 -3.74 -4.3 -4.36 0.34 0.85 0.88 0.93 1.6 0.71 0.13 0.58 0.05 0.63 0.85 0.83 0.19 0.76 0.67 -0.12 -0.2 -0.83 -0.27 0.1 -0.48 -0.74 -0.58
-0.7 -1.63 -0.81 -1.47 -0.78 -0.83 0.81 -1.29 -1.4 -2.23 0.51 0.58 0.7 0.29 0.37 0.85 0.37 1.0 0.26 0.41 0.33 0.65 0.46 0.87 0.2 -0.4 -0.32 -0.68 -0.49 -0.53 -0.79 -0.99 -0.51
-3.88 -4.1 -4.3 -3.76 -4.77 -5.18 -0.41 -6.91 -4.93 -5.29 0.8 0.7 0.15 0.71 1.4 0.82 0.49 0.8 1.41 0.65 1.13 0.7 0.49 0.65 0.43 -0.57 -0.08 -0.91 -0.49 -0.11 -1.07 -0.98 0.07
-1.8 -1.39 -2.64 -2.83 -2.23 -2.63 -0.62 -2.22 -1.89 -1.61 0.81 -0.01 1.23 -0.14 0.78 1.17 0.74 0.29 0.6 0.28 0.2 0.47 0.73 1.29 0.68 0.12 0.15 -0.89 -0.28 -0.3 -0.61 -1.3 -0.1
-6.46 -6.49 -6.27 -6.45 -7.06 -6.55 -0.94 -8.83 -8.74 -9.38 0.28 -0.26 0.11 -0.29 2.18 0.65 -0.13 0.58 0.94 1.26 0.96 0.31 -0.52 0.79 -0.27 -0.29 -0.47 0.57 0.22 0.14 0.41 0.64 -0.01
-1.37 -0.83 -2.33 -2.58 -2.51 -1.43 0.53 -6.82 -3.15 -6.24 0.12 0.65 0.31 0.08 1.85 1.18 0.56 0.62 0.57 0.28 0.82 -0.5 -0.02 0.94 0.44 -0.33 -0.26 -0.59 -0.56 -0.23 -0.47 -0.55 0.08
-3.08 -3.79 -3.53 -3.59 -3.79 -3.35 -0.37 -3.88 -3.74 -2.72 0.71 -0.08 1.2 -0.45 1.08 1.39 0.55 0.19 1.18 1.57 1.11 0.06 0.61 0.61 -0.56 0.09 -0.07 -0.75 -0.31 -0.83 -0.32 -0.38 -0.45
-2.25 -2.36 -3.53 -3.45 -3.01 -3.59 -1.14 -3.17 -2.47 -3.5 -0.03 -0.12 1.17 -1.04 1.65 1.0 1.06 0.92 0.89 0.32 0.73 -0.35 0.61 0.64 1.02 -0.23 0.07 -0.11 -0.12 -0.16 -0.33 -0.42 -0.39
-7.42 -7.87 -7.3 -8.79 -9.26 - -1.27 - -8.41 - 1.02 -0.04 1.17 -0.56 -0.36 1.91 0.81 0.18 1.82 1.69 1.8 -0.26 0.18 -1.43 -0.97 -0.35 -0.03 -0.76 -0.74 -0.26 -0.2 -0.53 -0.29
- - - -11.72 -12.21 -11.77 -3.41 - - -12.74 1.28 0.13 0.06 1.71 1.23 1.96 -0.06 0.58 0.64 0.73 0.61 0.72 1.17 -0.22 -0.44 -0.51 -0.95 -0.6 -0.16 -0.2 -0.22 0.3 -1.27
-1.98 -1.84 -2.07 -2.28 -1.76 -1.7 -0.64 -4.65 -5.29 -4.72 0.35 -0.01 1.55 -0.42 0.97 0.65 0.64 0.69 0.57 0.14 0.56 0.58 0.97 1.47 1.27 -0.43 -0.14 -1.12 -0.55 -0.38 -0.45 -0.8 -1.11
-2.13 -2.57 -2.1 -1.71 -1.77 -1.52 1.01 -2.29 -2.09 -1.58 0.77 0.61 0.18 0.91 0.43 0.72 0.09 0.96 0.79 0.66 0.52 0.38 0.23 0.99 0.22 -0.56 -0.35 -0.49 -0.31 -0.32 -0.46 -0.46 -0.41
-0.78 -0.67 -2.81 -3.79 -2.46 - -0.13 - - -2.89 0.9 0.2 1.64 0.62 0.79 1.12 1.04 0.78 0.65 0.81 0.44 1.04 1.9 -1.55 1.75 -1.59 -1.11 - - -5.21 - - -
- -3.62 - - - - -0.56 - - - 1.24 0.53 2.13 0.9 -0.15 0.3 1.23 -0.97 1.52 0.49 0.57 1.47 1.84 -1.45 1.93 -1.46 -0.9 - - - - - -
-11.78 -8.79 - -10.04 -8.95 -11.28 -8.36 -6.64 -10.27 -3.77 1.71 0.14 -0.69 -0.35 1.88 1.82 -0.68 1.43 1.56 1.57 1.71 -2.22 -1.77 -3.85 -0.12 -0.14 0.03 -0.68 -0.83 -0.73 -0.32 -0.36 -0.64
-3.08 -1.98 -2.89 -2.38 -2.4 -2.09 -0.64 -2.96 -2.67 -2.59 0.92 0.19 0.46 0.6 1.27 0.72 0.59 1.18 1.11 0.78 1.09 0.57 0.29 0.51 0.23 -0.37 0.04 -1.09 -0.7 -0.34 -0.92 -0.93 0.01

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.