Heatmap: Cluster_472 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-3.08 -3.88 -3.86 -4.08 -4.02 -3.9 -1.51 -7.36 -9.8 -6.57 0.58 -1.49 2.17 -2.01 0.06 0.04 0.73 -0.38 -0.17 -0.65 -0.5 -1.44 0.92 3.14 1.62 0.58 0.56 -4.19 -2.44 -1.6 -3.57 -4.54 0.07
-1.51 -1.01 -1.75 -1.16 -0.38 0.37 -2.62 -4.2 -2.06 -3.75 0.92 0.49 0.6 -0.02 -2.37 0.92 1.0 1.52 0.78 0.18 0.7 0.71 0.61 -2.0 2.0 -0.68 0.12 -1.36 -1.01 -1.23 -1.86 -1.46 -0.99
-3.38 -2.95 -4.69 -4.65 -4.12 -7.72 -2.27 -5.34 -5.62 -3.72 1.09 0.27 0.68 1.96 2.32 -0.02 0.25 0.63 0.88 0.94 1.19 -2.69 0.74 -3.19 0.46 0.45 0.41 -1.34 -1.29 -1.04 -0.8 -1.39 -1.04
-3.56 -4.78 -6.51 -5.69 -5.72 - 0.68 - - - 0.37 0.69 1.15 -1.19 0.98 0.01 1.21 0.12 0.77 0.1 0.47 1.11 1.03 1.5 1.16 -0.04 0.45 -1.02 -2.01 -1.09 -0.32 0.13 -1.34
-4.85 -4.48 -3.14 -2.37 -3.29 -2.3 -1.42 -8.86 -5.93 -4.65 0.6 -2.25 0.03 -1.73 2.92 0.39 0.17 0.88 0.82 0.95 0.83 -0.17 -0.9 1.27 0.71 0.69 0.51 0.52 -3.79 -4.41 -0.71 -1.08 -1.48
-0.2 0.37 -0.81 -0.92 -1.41 -1.68 -0.75 -3.07 -2.68 -2.32 1.32 -0.13 1.22 -0.85 -0.14 0.68 0.8 1.58 1.2 0.36 1.19 0.46 0.62 0.56 1.5 -0.93 -0.43 -6.12 -7.78 -5.96 -5.48 -6.14 -7.5
- - - - -8.55 - - -4.76 -2.57 -1.02 1.89 1.25 -0.12 -0.75 -0.63 1.06 1.67 1.59 1.45 -0.59 1.36 -1.65 -0.57 -3.23 2.23 0.41 1.11 -6.03 -5.4 -5.74 -3.15 -1.75 -3.81
-3.73 -2.42 -1.69 -2.67 -1.47 -2.77 -2.04 -7.43 -6.96 - 1.32 -1.65 0.64 -2.97 1.97 1.5 0.99 0.65 0.37 0.61 0.4 -0.66 1.09 1.02 1.35 -0.58 -0.32 -0.53 -1.22 -1.26 0.27 -0.2 -2.69
-3.83 -3.34 -4.89 -4.18 -3.96 -3.4 -3.15 -2.42 -1.68 -2.18 1.13 -0.13 2.08 -0.5 -0.07 1.03 1.61 0.01 0.41 -0.45 0.13 -0.09 0.4 -1.08 1.88 0.65 1.01 -2.06 -0.2 -0.04 -1.53 -2.17 -0.22
- - - - - - - - - - -5.08 -1.8 -0.15 - - - 0.3 - - - - -0.77 2.67 2.9 2.17 2.05 2.4 0.37 -2.29 - -3.15 -0.72 -5.1
-3.44 -3.26 -4.22 -4.4 -2.84 -2.23 -2.5 -5.97 -4.73 -4.51 1.16 0.11 1.56 -0.59 -1.34 1.16 1.0 1.32 0.96 0.26 0.9 0.84 1.09 -1.61 2.3 -0.44 -0.04 -1.73 -1.42 -1.43 -1.84 -1.54 -1.13
-2.74 -4.26 -2.73 -2.95 -3.31 -4.75 0.71 -4.59 -3.77 -6.24 0.18 0.26 0.92 -0.01 0.51 0.61 1.02 0.22 0.58 0.12 0.47 0.82 0.7 1.43 1.26 0.46 0.68 -0.25 -1.64 -1.16 -0.32 0.07 -1.47
-6.35 -5.07 -7.92 -6.27 - - -4.02 - - - 1.8 -0.96 2.35 -4.28 1.66 -0.69 1.61 1.08 1.01 -0.41 1.05 -4.37 -3.31 0.24 2.6 0.27 0.32 -8.29 -6.7 -5.64 -5.24 -5.29 -
-0.9 -0.9 -1.88 -2.5 -2.3 -2.46 -0.4 -0.92 -2.31 -2.19 0.68 -0.06 0.21 0.35 2.36 0.44 0.03 0.75 0.64 0.31 0.83 0.5 0.24 -0.21 0.62 0.27 0.27 -0.67 -1.04 -0.79 -1.16 -1.24 -0.6
- - - - - - -7.22 - - - 1.59 -5.67 0.95 -5.36 -0.57 2.34 1.4 1.87 1.32 0.72 1.18 -7.25 -6.02 0.46 0.96 1.62 1.43 -6.52 -5.83 -6.75 -9.58 -8.85 -1.28
-9.93 -8.19 -9.51 -8.22 -9.57 - -5.43 -7.55 -10.15 -7.99 1.61 -3.67 1.96 -1.89 -1.48 1.92 1.69 1.69 0.94 0.3 0.65 -4.55 -4.43 0.03 1.68 1.61 1.46 -4.63 -6.96 -8.27 -7.49 -6.24 -2.44
-1.15 -1.78 -2.14 -3.08 -2.03 -2.42 -0.64 -1.59 -2.73 -3.2 -0.25 -0.27 1.61 -1.0 -2.32 -0.92 0.97 -1.25 -1.64 -1.63 -1.68 0.54 2.6 2.85 1.15 0.25 0.3 -2.77 -1.38 -1.25 -3.73 -3.12 -1.18
-2.0 -2.14 -2.6 -1.86 -1.56 -2.45 0.52 -3.95 -0.76 -5.05 0.3 -0.04 0.66 0.19 -0.57 0.87 0.91 0.45 0.99 0.59 1.23 1.38 0.93 -0.29 1.3 -0.07 0.28 0.06 -3.56 -3.71 -0.19 -0.37 -2.78
-0.37 -0.32 -0.54 -0.84 -0.8 -1.0 -0.01 -1.13 -1.22 -1.57 0.44 0.15 0.66 0.89 0.02 0.95 0.66 0.74 0.82 1.0 0.89 0.29 1.01 -0.18 0.69 0.54 0.43 -3.38 -3.21 -2.9 -3.4 -3.4 -2.89
- -8.53 - - -12.49 - -7.29 - - - 1.44 -0.68 1.56 -1.73 2.69 1.22 0.71 0.77 1.15 1.01 1.04 -0.38 0.36 -0.31 1.88 -0.54 -0.6 -5.34 -10.28 - -7.57 -4.89 -4.57
-0.79 -0.07 -2.02 -2.48 -4.94 -1.87 -0.05 -1.97 -1.62 -2.21 0.08 1.38 -0.18 -0.25 -1.91 1.08 0.94 0.33 0.64 0.26 0.29 -1.33 1.18 1.44 0.54 1.06 0.95 -4.58 -0.42 -0.4 -1.58 -3.19 0.28
-2.68 -4.13 -2.2 -0.99 -1.25 -1.13 -1.74 -0.37 0.05 -0.43 0.77 1.64 1.31 0.1 -2.5 0.67 1.11 0.16 0.58 0.01 0.54 1.04 -1.0 -1.61 2.07 0.98 0.83 -7.43 -5.07 -5.34 -8.08 -6.89 -4.66
-6.19 -6.97 -6.68 -6.77 -6.35 - -5.15 - -7.04 - -0.1 -0.03 1.65 -1.72 2.32 0.63 0.75 0.39 0.61 0.89 0.66 -0.59 -0.68 2.1 1.16 0.53 0.34 -0.66 -3.5 -1.72 -1.49 -1.7 -0.21
- - - - - - -3.03 -4.1 -6.02 - -0.67 0.21 1.54 -0.74 1.75 1.31 0.36 -0.62 0.58 1.02 0.52 0.02 0.1 1.15 0.65 -0.07 -0.02 0.75 0.19 -0.07 0.41 0.21 -0.41
-4.76 -3.2 -4.21 -3.28 -2.78 -1.56 -2.12 -1.14 -0.63 0.01 -0.34 0.26 0.79 0.16 1.82 -0.29 0.34 0.54 0.1 0.33 0.27 -0.05 -0.45 0.58 0.38 -0.02 0.25 0.78 0.52 0.15 0.55 0.43 -0.49
-4.5 -2.63 -2.41 -2.29 -0.8 -1.82 -0.54 - - - 1.36 -0.43 0.42 -1.57 0.82 1.04 1.46 1.33 1.16 0.55 -0.01 -2.19 -0.11 -1.04 0.09 0.24 0.7 0.58 -0.27 -0.07 0.03 0.07 0.34
-7.02 -6.19 -6.98 - - - -6.67 -8.56 - -6.08 1.56 -0.37 1.18 -0.92 -0.6 1.29 0.82 1.19 1.3 0.72 1.26 1.25 -0.0 -0.23 2.5 0.2 0.61 -4.26 -5.96 -4.91 -5.24 -7.68 -3.44
0.03 0.32 -1.25 -1.72 -1.31 -2.03 -0.58 -4.32 -4.13 -2.56 1.16 -0.41 1.61 0.05 -0.04 0.64 0.81 0.95 0.69 0.58 0.59 0.12 1.28 0.04 1.84 0.19 0.32 -10.54 - - - - -
-3.87 -3.71 -4.05 -3.75 -3.6 -5.9 -3.31 -1.48 -0.03 -1.13 -0.11 0.65 1.14 -0.52 -1.11 -0.16 0.63 -0.52 -0.55 -0.88 -0.66 0.41 0.25 3.11 1.81 0.61 0.82 -0.63 -4.18 -4.62 -1.31 -0.63 -3.62
-0.35 -0.65 -0.84 -0.78 -0.66 -0.44 -0.09 -0.56 -0.78 -0.91 -0.71 0.39 0.84 0.19 1.06 -0.4 -0.0 -0.48 -0.67 -0.97 -0.65 0.73 0.72 1.42 0.28 -0.33 -0.08 -0.52 0.4 0.6 -0.08 -0.56 0.1
-1.07 -1.49 -1.57 -1.51 -1.85 -1.55 0.23 -2.96 -1.82 -2.28 0.56 0.03 2.0 -0.67 -0.28 0.52 0.89 -0.03 0.13 -0.51 -0.24 0.04 -0.21 1.02 1.87 0.52 0.58 -1.44 -0.67 -0.27 -1.18 -1.02 -0.09
- - - - - -4.42 - - - - 0.95 -2.1 -0.11 -3.09 2.73 0.46 0.69 0.9 1.22 1.23 2.15 -0.55 -2.58 1.23 0.81 0.86 0.74 -1.59 - -4.09 -2.92 -3.53 -3.11
-0.26 0.33 -0.97 -0.76 -1.12 -0.54 -0.73 -0.65 -1.2 -0.54 0.58 -0.47 0.99 -0.25 0.13 0.75 0.74 0.38 0.86 0.71 0.71 0.1 0.67 0.23 0.04 0.08 0.23 -1.3 -0.61 -0.45 -0.91 -1.18 -0.88
-3.8 -3.97 -6.18 -5.64 -5.08 -3.0 -2.36 - - - 0.93 -1.3 0.59 -1.59 1.79 1.59 1.33 0.74 0.47 0.54 0.38 -0.78 0.7 0.81 0.9 -0.33 0.37 -0.07 -0.17 -0.54 0.66 0.31 -1.83
- - -5.43 -6.52 -5.02 - -0.73 - - - 0.61 1.13 -0.6 1.19 2.26 2.1 -0.09 1.44 1.56 1.35 1.25 0.03 -1.6 -4.16 1.4 -1.34 -1.27 - - -3.24 -5.0 -4.73 -4.88
-1.03 -1.77 -1.77 -1.89 -2.04 -1.86 -1.65 -5.3 -5.38 -3.68 0.79 -1.19 1.66 -3.47 0.0 0.38 1.15 -0.08 -0.35 -0.32 -0.63 -1.44 1.09 2.22 1.98 0.9 0.93 -3.52 -1.84 -0.85 -3.04 -4.76 0.69
- -4.69 - - - - - - - - 1.13 -0.72 1.21 - 1.79 2.24 -0.45 1.24 1.04 -0.81 1.5 -0.41 -2.89 0.15 2.51 0.08 -0.2 -1.55 -2.13 -3.31 -1.83 -0.95 -4.75
-1.99 -2.64 -3.23 -5.18 -2.45 -1.71 0.16 -3.25 -5.19 -3.03 0.43 -0.2 1.52 -0.5 0.78 0.97 0.54 1.25 1.37 0.91 1.68 0.3 0.35 0.19 1.33 -0.52 -0.05 -2.45 -1.62 -1.24 -1.61 -1.88 -1.92
-2.11 -1.66 -1.64 -1.38 -1.97 -2.26 0.93 -2.37 -3.84 -4.15 -0.35 0.55 1.24 - 1.39 -0.31 0.14 -0.2 -0.23 -0.2 0.23 0.91 0.22 1.14 0.02 0.25 0.52 0.25 0.11 0.46 0.12 0.26 0.4
-5.68 -4.13 -5.28 -6.87 -6.25 -5.22 0.71 -3.58 -5.35 -5.7 -0.05 0.32 1.52 0.45 1.84 0.72 -0.3 -0.66 0.31 0.03 0.87 1.24 1.14 1.56 0.16 -0.19 -0.25 -0.86 -0.95 -0.5 -0.56 -1.22 -0.68
-0.19 -0.31 -1.62 -2.56 -3.02 -2.56 -0.54 -1.31 -0.59 -3.46 -0.12 -0.53 2.27 -1.92 -0.27 -1.55 1.57 -1.06 -2.25 -2.26 -1.15 -1.5 1.38 2.59 1.68 0.11 0.71 -8.24 -3.04 -0.88 -8.14 -5.61 -0.16
-2.78 -2.73 -3.56 -4.46 -3.39 -3.1 -1.16 -2.33 -2.14 -1.28 0.93 0.82 0.64 0.84 2.26 1.32 -0.1 0.72 1.07 1.31 1.19 0.64 0.82 -0.08 0.46 -0.19 -0.31 -9.28 - - -8.83 - -
- - - - - - -5.52 - - - 1.45 -4.47 1.84 -1.87 1.38 0.88 1.73 1.51 0.58 1.19 0.59 0.15 -1.67 0.74 1.32 0.0 0.41 -0.51 -4.2 -3.49 -1.55 0.4 -4.38
-0.3 0.04 -1.99 -2.35 -2.91 -1.15 0.66 -2.69 -3.64 -1.42 1.58 0.2 1.51 -0.16 0.32 0.38 1.34 0.5 0.43 0.4 -0.06 -2.44 -1.35 -3.01 2.43 0.93 0.95 - -6.74 -7.63 - - -5.79
- -6.12 -5.6 -2.93 -4.15 -1.81 -1.52 - - -5.17 0.45 -1.93 0.62 -2.25 2.46 0.76 0.17 1.17 1.14 1.21 1.54 -0.42 -1.11 1.82 1.23 0.36 0.22 -0.72 -6.54 - -2.46 -2.63 -2.14
-1.77 0.03 -4.96 -6.41 -6.11 -4.06 -0.75 -5.97 -4.95 -3.5 0.51 -1.06 1.77 -2.24 2.31 0.93 0.93 0.46 0.23 0.27 -0.18 -1.13 1.22 1.05 1.81 -0.25 0.32 -1.91 -1.57 -1.57 -1.91 -3.44 -2.75
-1.13 -1.3 -0.93 -1.57 -1.08 -1.72 0.57 -2.47 -2.62 -3.97 0.62 0.32 0.59 0.19 0.17 0.92 0.86 0.88 0.95 1.05 1.02 0.62 0.52 0.45 -0.19 0.27 0.51 -1.56 -1.19 -0.92 -1.46 -1.05 -1.09
-2.9 -1.46 -4.14 -2.38 -2.28 -1.65 -1.59 -7.38 -6.23 -7.41 1.61 -0.54 1.36 -2.19 -0.09 1.35 0.51 1.67 1.17 1.08 0.93 0.21 1.09 -0.46 1.7 -0.05 0.48 -2.59 -2.82 -3.1 -3.01 -3.04 -2.23
- - - - - -3.01 - - - - 0.21 -1.58 0.74 - 3.01 2.11 -0.16 1.67 0.83 -0.09 0.55 -3.73 0.58 0.01 0.04 0.33 0.7 -0.98 -3.64 -3.08 -1.37 0.1 -1.26
- -4.11 -7.28 - -7.18 - -4.9 - - - -1.17 0.16 1.31 0.14 0.97 0.05 -0.3 -0.28 -1.27 -0.33 -0.48 0.09 2.73 2.97 1.7 0.01 0.07 -2.62 -7.0 -7.01 - -2.9 -5.23
- -4.42 -5.08 -3.03 -2.57 -1.62 -5.48 -3.16 - - 1.13 - 0.73 - 2.63 1.04 0.22 2.04 0.82 1.1 1.13 -1.22 -4.58 0.91 1.73 0.25 0.34 -1.43 - - -4.43 -4.49 -3.41
-0.63 -0.64 -2.72 -3.07 -3.01 -3.58 -0.64 -5.38 -5.04 -4.38 1.14 -0.32 1.5 0.15 0.5 1.24 0.63 1.11 1.04 1.06 1.14 -0.04 1.24 -0.52 1.79 0.1 0.2 - - - - - -
-1.01 -1.21 -1.38 -0.8 -1.5 -2.13 0.57 -3.24 -2.92 -3.95 -0.69 0.47 1.08 -1.26 1.48 0.21 0.24 -1.29 0.07 -0.52 -0.15 0.78 0.58 1.5 -0.05 -0.35 0.14 0.11 0.33 0.49 0.06 0.36 0.11
-5.99 -6.42 -6.87 - - - -6.91 - - - 0.44 0.22 1.52 -0.53 2.52 1.21 0.39 0.43 0.8 0.64 0.68 -0.37 -0.48 2.15 0.84 -0.1 -0.1 -1.36 -3.62 -3.13 -1.5 -2.3 -0.91
-1.45 -1.67 -1.46 -1.25 -0.96 -0.52 -1.23 -0.79 -1.14 -1.06 0.83 -0.53 0.65 0.22 1.49 1.01 0.47 0.83 0.25 0.2 0.41 -0.24 -0.55 0.29 0.42 -0.53 -0.27 0.21 0.07 -0.01 0.1 -0.35 -0.25
-2.04 -2.45 -3.01 -2.45 -1.56 -1.71 0.16 -2.76 -3.1 -3.35 0.11 0.98 1.7 -0.14 1.44 -0.07 0.17 0.24 0.5 -0.23 0.04 1.57 1.64 1.09 0.81 -0.3 -0.36 -1.63 -1.65 -1.06 -1.53 -2.52 -1.07
- - - -4.75 - - - -3.74 - - - - 0.9 - - - 0.22 - - - - 0.13 2.7 3.39 2.35 1.11 1.77 -0.66 - - -4.19 -1.53 -3.94
-4.65 -4.79 -4.26 -4.56 -6.77 -5.77 -5.47 -7.7 -6.22 -7.36 0.75 -0.33 1.01 -0.98 2.44 -0.18 1.04 0.92 0.73 0.57 0.88 -0.46 -0.55 1.47 1.38 0.56 0.36 -0.5 -2.92 -1.71 -1.27 -1.21 -0.05
-4.3 -2.97 -4.47 -4.98 -4.09 -4.88 -0.3 -3.46 -3.09 -0.14 -0.73 1.79 0.71 0.21 -0.88 -1.85 1.09 -4.16 -2.74 -2.67 -2.53 1.08 1.63 2.38 1.52 0.76 1.11 -5.75 -2.2 -0.72 -5.59 -6.05 1.23
- -2.61 - - -5.78 - -1.32 - -3.63 - 0.79 -2.45 1.39 - 0.73 -0.21 0.94 1.72 -1.88 -1.53 -1.5 -0.71 2.83 2.68 1.99 -0.9 -1.28 - - - - - -
-6.72 -5.91 -6.49 -5.16 -5.21 -4.44 -2.29 -6.1 -6.25 -4.57 0.95 0.44 0.75 -0.63 -1.15 0.55 1.25 1.16 1.03 0.48 1.12 0.9 1.24 -1.79 2.11 -0.11 0.39 -0.76 -0.82 -0.64 -1.03 -0.8 -0.14
- - - - -6.98 - -8.28 -5.31 - - 0.82 1.36 -0.17 0.51 0.8 1.77 -1.06 2.29 1.46 1.69 1.51 -0.13 0.08 -0.73 1.66 -0.73 -0.77 -6.61 -5.78 - -8.13 -8.42 -6.65
-6.34 -5.22 -7.74 -10.69 -9.18 - -1.87 - - - 1.13 -1.14 1.95 -1.61 -0.14 -0.08 1.04 1.59 1.35 1.71 1.55 -2.37 -0.3 -5.15 2.64 -0.03 0.2 -5.95 -1.86 -1.66 -4.66 -5.72 -3.36
-0.87 -0.37 -1.26 -1.58 -1.79 -1.49 -0.9 -2.48 -3.93 -1.73 0.77 -0.13 1.37 -0.05 -0.6 0.49 0.46 0.62 0.71 0.09 0.54 -0.99 -0.37 -1.63 2.23 -0.47 -0.03 0.25 0.0 -0.3 -0.03 -0.3 0.15
- -4.22 - - -6.66 - -4.41 - - - 0.69 -0.08 -0.1 -0.07 1.8 1.96 -0.29 2.44 0.7 0.59 1.71 -0.22 -1.23 -0.08 1.93 -0.49 -0.49 -2.57 -5.48 -4.39 -2.1 -2.25 -1.8

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.