Heatmap: Cluster_370 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
1.33 0.53 1.55 1.37 2.02 1.78 -0.41 1.53 1.28 0.01 -1.2 -1.52 -2.15 -1.81 -0.96 -1.95 -0.9 -1.06 -1.4 -1.54 -1.41 -0.99 -1.86 -2.55 -0.75 -0.49 -0.58 -2.03 -1.6 -1.27 -1.77 -1.95 -1.69
0.3 -1.17 2.29 2.64 2.84 3.0 -0.13 0.55 -0.12 -0.41 - -2.04 -3.33 -2.86 - - -6.33 - - - - -1.82 - -6.53 -2.54 -6.88 -7.07 - - - -8.95 - -
0.65 0.24 1.14 1.29 1.68 1.59 -0.42 1.14 0.73 0.71 -0.5 -0.72 -1.28 -0.87 0.02 -0.7 -1.39 -0.61 -0.65 -1.02 -0.78 -1.04 -1.33 -1.23 -0.63 -0.99 -1.08 -0.87 -0.58 -0.71 -0.83 -0.84 -0.66
0.38 -0.71 1.74 1.78 2.81 2.2 1.29 -0.76 -2.49 -2.07 -3.4 -0.24 0.06 0.56 -4.71 -2.32 -0.31 -3.25 -4.98 -4.4 -5.01 -0.35 -1.07 -2.4 -0.75 -1.04 -1.32 -2.38 -1.63 -1.34 -2.45 -2.9 -1.35
0.57 0.36 0.89 0.92 1.27 1.19 0.21 0.79 0.49 0.64 -0.35 -0.12 -1.57 -0.49 -0.64 -0.27 -0.54 -0.2 -0.41 -0.35 -0.22 -0.44 -0.74 -0.71 -0.78 -0.23 -0.17 -0.73 -0.6 -0.75 -1.08 -0.94 -0.64
0.33 -1.68 1.72 2.06 2.76 2.57 0.33 0.62 -0.51 -1.11 -0.95 -1.86 -1.27 -2.26 -1.25 -1.31 -1.08 -1.43 -2.09 -2.17 -1.9 -1.39 -2.52 -1.69 -0.6 -2.42 -2.03 -2.37 -2.16 -1.98 -2.02 -2.27 -1.26
2.04 1.37 2.56 2.6 2.68 1.47 1.18 -1.29 -0.47 -1.31 - -4.18 - - - - -0.98 - - - - -3.27 - -1.62 -1.67 -6.36 -6.09 -5.49 - - - - -
0.75 -0.62 1.68 1.9 2.1 1.79 -0.26 0.59 -0.1 -0.06 -0.72 -0.57 -0.77 -1.43 -1.79 -1.21 -0.89 -0.89 -1.51 -1.29 -1.22 -0.71 -1.86 -0.97 -0.34 -1.01 -1.03 -1.13 -0.83 -0.96 -1.23 -0.88 -0.2
1.11 0.35 1.47 1.59 2.07 2.02 -0.22 1.84 0.96 0.79 -2.72 -1.39 -2.78 -1.78 -3.45 -3.13 -1.68 -2.91 -3.53 -3.44 -3.11 -1.66 -2.49 -2.18 -1.13 -1.73 -1.79 -0.79 -0.4 -0.77 -0.78 -1.02 -0.42
0.27 -1.61 1.72 2.05 2.51 3.1 2.13 - - - - 2.24 -4.36 -2.28 -5.28 - -4.6 - - - - - - - - -3.53 -2.05 - - - - - -
1.03 0.1 1.81 2.05 2.07 1.93 0.37 0.44 0.07 0.27 -2.14 -0.93 -1.71 -1.51 -2.59 -2.78 -2.33 -2.71 -2.54 -2.61 -2.72 -0.94 -1.31 0.06 -0.93 -2.44 -2.52 -0.51 -0.96 -1.05 -0.41 -0.2 -0.78
-0.2 -1.31 1.08 0.89 2.11 1.76 0.4 0.13 -0.73 -1.14 -0.86 -0.64 -0.45 -0.28 -0.41 0.03 -0.98 -0.3 -0.72 -0.32 -0.59 -0.66 -0.81 -0.55 -0.39 -0.73 -0.76 -0.34 -0.08 -0.35 -0.38 -0.42 -0.31
1.53 -0.37 2.53 2.47 2.59 1.23 2.21 0.87 0.35 -0.83 - -0.24 -3.72 -4.64 - - -4.79 - - - - -4.1 -5.76 -3.89 -2.43 -7.96 -6.42 - - - - - -
0.91 0.42 1.62 1.96 2.02 1.31 1.04 -2.27 -4.13 -4.05 -1.57 1.87 -0.38 1.13 -1.71 -1.13 -1.88 -0.87 -1.12 0.13 -0.82 0.7 -1.77 -1.15 -0.63 -3.3 -3.4 - - - - - -
1.06 0.73 0.91 1.26 2.25 2.0 -0.54 1.45 0.72 0.29 -2.99 -1.63 -1.59 -2.65 -2.22 -3.05 -0.85 -3.08 -3.33 -3.32 -3.18 -1.3 -1.07 -1.07 -0.92 -0.54 -0.57 -0.66 -0.24 -0.39 -0.45 -0.56 -0.4
0.8 -0.4 1.45 1.4 1.88 1.4 0.73 1.45 0.4 0.13 -2.18 -0.72 -0.56 -1.2 -2.7 -1.95 -0.85 -1.81 -2.09 -2.39 -2.06 0.14 -0.59 -0.57 -0.32 -1.13 -1.05 0.38 -1.47 -1.71 -0.39 -0.79 -0.63
0.36 -1.92 1.77 2.13 2.96 2.61 0.65 1.58 0.53 0.54 -11.55 -1.81 -1.81 -3.09 - -11.26 -2.43 - - - -12.23 -0.64 -4.34 -2.49 -1.25 -4.94 -3.81 -8.86 -9.62 -12.23 - -9.3 -4.53
-0.52 -2.25 0.97 1.05 2.27 1.88 1.35 0.08 0.58 -0.76 -1.92 0.82 0.56 -0.16 - -3.57 -0.52 -3.72 -3.3 -3.89 -3.98 0.91 -1.9 1.6 0.95 -0.79 -0.68 - -6.19 -5.93 - -7.25 -3.96
0.84 -0.28 1.3 0.82 1.66 1.59 -0.46 1.35 1.28 0.18 -0.52 -0.67 -0.88 -0.79 -0.78 -0.76 -0.72 -0.44 -0.94 -1.24 -1.44 -0.67 -0.67 -1.92 -0.18 -0.23 -0.16 -1.51 -1.2 -1.06 -1.01 -0.85 -1.29
1.32 -0.22 1.99 2.26 2.92 2.41 -1.1 1.56 1.62 0.12 -6.38 -4.04 -4.32 -6.82 -7.66 -7.27 -3.99 -9.33 -7.7 -7.76 -8.24 -3.68 -7.79 - -3.31 -5.77 -5.33 - - - - - -7.63
-0.03 -1.97 1.65 2.38 3.01 2.85 1.24 -1.48 -3.26 -3.81 -4.09 0.8 0.04 -3.66 -6.74 - -1.24 -5.3 -6.18 - -6.61 -4.82 -2.59 -3.1 0.2 -3.13 -2.09 -7.22 -7.98 -7.1 - - -4.43
0.43 -1.6 1.47 1.36 2.16 2.1 1.24 -0.83 -0.93 -1.25 -2.19 0.05 -1.62 0.3 -1.59 -2.01 -1.2 -1.09 -1.66 -1.91 -1.85 0.7 0.05 0.72 -0.81 -0.67 -0.57 -1.48 -1.88 -1.71 -1.41 -1.25 -1.67
1.81 1.22 2.22 2.09 3.0 1.87 1.2 0.09 0.97 -0.93 -8.58 -2.86 -8.25 -4.22 - -8.35 -9.16 - - - - -8.8 -7.29 - -5.79 -3.67 -2.76 -8.54 -3.43 -3.22 -8.11 -9.42 -4.45
1.01 0.8 1.72 1.87 1.95 2.08 -0.27 0.8 0.51 0.2 -3.21 -1.0 -2.35 -0.92 -2.42 -2.56 -0.6 -3.32 -3.01 -3.74 -3.09 -0.92 -1.21 -1.08 -0.97 -0.19 -0.25 -1.0 -1.25 -1.1 -1.78 -1.5 -0.76
0.54 -0.06 1.11 1.36 1.78 1.69 0.13 1.48 0.77 0.63 -1.6 -0.54 -0.66 -0.77 -1.74 -1.59 -0.33 -1.57 -2.59 -2.26 -2.21 -0.43 -1.7 -1.74 -0.63 -0.4 -0.12 -0.87 -0.7 -0.49 -0.7 -0.91 -0.35
0.99 0.02 1.97 2.12 2.49 2.42 -0.21 0.48 -0.2 -0.23 -1.98 -0.98 -2.47 -1.69 -2.44 -2.33 -2.47 -2.14 -2.65 -2.35 -2.56 -2.43 -2.81 -4.83 -1.4 -0.74 -0.83 -1.8 -0.77 -0.91 -1.67 -1.94 -1.66
0.38 -0.65 1.68 1.89 2.77 2.61 1.21 0.48 -0.34 -0.04 -5.08 -0.26 -0.72 -1.45 - -5.36 -1.04 -5.2 -6.55 -7.16 -8.02 -0.09 -2.26 -0.71 -0.34 -1.79 -1.4 -3.82 -6.6 -10.89 -5.95 -5.47 -6.07
0.85 -0.11 1.66 1.85 2.05 1.97 -0.02 1.24 0.31 0.16 -2.27 -1.06 -1.17 -2.16 -1.32 -2.73 -0.79 -1.9 -2.5 -2.59 -2.35 -0.46 -1.47 -1.67 -0.66 -0.74 -0.59 -0.73 -0.99 -1.01 -0.9 -1.04 -0.98
1.05 -0.68 1.92 2.12 2.52 2.29 0.77 0.85 -0.47 0.14 -2.97 -0.96 -0.53 -1.68 -2.4 -2.78 -1.3 -3.19 -3.22 -3.36 -3.3 -0.37 -2.0 -1.87 -0.22 -2.45 -2.1 -3.23 -2.68 -2.56 -3.09 -3.17 -2.31
0.81 -0.71 1.68 1.52 2.14 1.55 0.81 1.03 0.27 -0.02 -2.42 -0.88 -0.22 -1.8 -1.37 -1.64 -0.79 -1.88 -2.5 -2.56 -2.35 -0.31 -0.83 -0.25 0.23 -0.9 -0.73 -0.26 -2.77 -3.03 -0.75 -1.34 -0.63
1.44 0.44 1.54 1.34 1.81 1.41 -0.22 1.06 0.49 0.17 -1.19 -1.06 -1.55 -1.07 -0.95 -1.29 -1.05 -1.32 -1.35 -1.58 -1.26 -0.94 -0.43 -1.91 -0.61 -0.07 -0.19 -0.79 -0.97 -1.09 -0.77 -0.97 -1.06
-0.29 -2.53 1.93 2.32 2.84 3.14 1.12 -0.35 -1.28 -0.72 -5.74 -2.08 -4.72 -2.46 -7.39 -4.0 -4.54 -6.96 -7.82 -5.98 -6.32 -0.61 -2.62 -3.15 -3.66 -0.82 -2.93 -2.92 -4.11 -3.22 -2.21 -2.23 -2.39
0.82 -0.25 1.27 1.37 2.14 2.4 0.02 1.31 0.85 0.94 -1.69 -0.73 -1.22 -1.23 -0.93 -1.41 -1.02 -1.61 -1.67 -1.67 -1.67 -1.09 -1.82 -1.11 -0.91 -1.1 -0.79 -2.54 -2.18 -2.07 -2.38 -2.4 -2.08
0.87 -0.68 1.55 1.47 2.34 1.26 0.69 1.21 0.87 0.13 -1.53 -1.6 -1.65 -2.61 -0.57 -1.06 -1.56 -1.91 -1.77 -2.83 -2.05 -1.04 -0.97 -2.74 -1.38 -0.64 -0.53 -0.18 -0.76 -0.44 -0.34 -0.78 -0.97
0.34 0.1 1.14 1.09 1.51 1.27 -0.65 0.95 0.52 0.17 -0.94 -0.47 -0.56 -1.32 -0.25 -0.6 -0.98 -0.73 -0.81 -0.94 -0.57 -0.6 -0.68 -1.43 -0.05 -0.35 -0.3 -0.09 -0.15 -0.4 -0.19 -0.34 -0.4
1.21 -0.05 2.02 2.08 2.75 2.31 1.46 0.99 -0.11 -0.27 -8.82 -0.56 -0.89 -3.6 -8.59 - -1.61 - - - - -1.38 -4.11 -5.3 -0.25 -3.55 -2.53 -10.37 -11.01 -11.13 - - -4.19
1.29 -0.5 2.37 2.18 2.82 1.83 1.01 0.68 -0.75 -1.86 -8.65 -1.07 -5.85 -1.49 - - -6.67 - - - - 0.36 -7.81 -0.19 -5.22 -5.24 -5.41 -1.88 -1.9 -1.55 -1.94 -1.58 -1.07
1.86 0.37 2.53 1.83 2.29 0.47 1.69 0.04 -0.9 -1.5 -3.94 -1.47 0.6 -3.74 -3.09 -3.3 -1.22 -3.86 -5.13 -5.5 -3.84 -1.4 -0.58 -1.83 0.25 -3.04 -2.42 -2.49 -1.67 -1.53 -2.11 -2.64 -1.29
0.76 0.07 1.27 1.4 1.65 2.03 0.32 0.43 0.21 0.24 -0.99 0.69 -0.88 -0.12 -0.61 -1.02 -1.17 -0.89 -1.09 -1.09 -1.04 -0.56 -0.77 -0.65 -0.48 -1.21 -1.06 -1.2 -1.06 -1.35 -1.56 -1.43 -1.4
1.03 -1.13 2.12 2.04 2.51 2.39 0.49 0.51 -0.69 -1.79 -5.96 0.25 -6.41 -1.11 - - -7.36 -4.99 -6.86 -7.92 -7.89 0.35 - -1.21 -4.55 -1.31 -1.53 -1.15 -1.19 -0.72 -1.32 -1.12 -0.4
0.46 -0.43 1.1 1.02 1.82 1.89 0.18 1.53 0.92 0.18 -1.66 -0.68 -1.21 -1.24 -1.51 -1.22 -0.7 -1.02 -1.73 -1.6 -1.52 -0.95 -1.29 -1.21 -0.58 -0.8 -0.6 -0.68 -0.42 -0.23 -0.54 -0.49 -0.15
0.52 0.01 1.09 1.23 1.95 1.78 -1.37 1.33 0.6 -0.27 -0.5 -1.84 -2.26 -2.11 -0.79 0.52 -2.64 0.29 -0.91 -0.52 -0.52 -1.64 -2.33 -2.46 -3.12 -1.64 -1.16 -0.46 -0.19 -0.11 -0.54 -0.6 0.41
1.34 0.45 1.5 1.91 2.17 2.53 0.13 0.4 0.45 0.93 -1.45 -0.85 -1.83 -1.61 -0.84 -1.74 -1.8 -1.46 -2.7 -2.09 -2.32 -1.06 -2.66 -2.03 -1.13 -1.75 -1.47 -2.68 -2.5 -2.69 -3.05 -2.64 -2.64
1.44 0.78 1.64 1.74 2.34 2.07 0.12 0.99 1.17 0.62 -0.95 -1.6 -3.55 -1.93 -0.3 -2.11 -3.82 -0.14 -0.52 -0.34 -0.37 -2.77 -3.25 -6.18 -2.19 -6.83 -5.18 - - - - - -
1.62 0.73 2.38 2.15 3.02 2.29 1.35 0.45 -0.51 -1.82 - -1.97 -3.87 - - - -2.67 - - - - -7.27 -8.04 - -2.49 -5.6 -4.81 - - - - - -
0.38 -0.2 1.39 1.58 2.0 2.11 0.43 1.31 0.73 0.13 -1.55 -0.5 -1.04 -1.65 -1.23 -1.21 -0.37 -1.17 -1.42 -1.66 -1.41 -0.48 -0.68 -0.85 -0.25 -1.88 -1.53 -1.6 -1.59 -1.52 -1.68 -1.81 -1.52
1.17 -0.19 1.32 2.03 1.81 2.01 0.76 -1.31 -1.43 -0.63 -1.33 -0.43 -0.48 -1.16 -0.88 -1.17 -0.03 -1.79 -1.3 -2.23 -2.02 -0.66 -1.37 -0.95 -0.39 -0.23 -0.34 -1.24 -1.12 -0.74 -1.16 -0.5 -0.59
1.33 0.56 1.69 1.91 2.15 2.14 -0.64 1.33 0.79 0.42 -1.93 -1.51 -1.96 -1.75 -1.9 -2.35 -1.89 -1.83 -2.27 -2.31 -2.12 -1.6 -1.22 -2.1 -1.36 -1.0 -1.11 -1.61 -1.78 -1.89 -1.62 -1.87 -1.85
0.84 -1.02 2.04 1.88 3.11 2.18 1.3 0.03 -1.06 -0.17 -6.78 -0.58 -0.87 -2.36 -9.03 -9.12 -2.27 - -7.84 -9.71 -9.09 -1.49 -1.9 -0.28 -0.93 -2.5 -2.22 -3.83 -2.09 -2.23 -3.53 -5.7 -1.66
0.11 -1.95 1.55 1.81 2.37 2.08 1.83 0.29 -0.77 -0.76 -5.2 0.96 0.27 -1.37 -5.01 -6.9 -0.31 -6.74 -7.26 -6.33 -5.88 0.72 -1.87 -2.48 0.98 -1.63 -0.89 -4.7 -5.01 -4.93 -6.2 -5.11 -1.54
0.56 -0.44 1.71 1.61 1.78 1.57 -0.5 1.01 0.81 0.23 -0.91 -1.03 -1.29 -1.39 -0.52 -1.26 -1.58 -0.78 -0.7 -0.78 -0.66 -0.87 -1.34 -1.39 -0.6 -1.06 -1.03 -0.73 -0.59 -0.71 -0.75 -0.61 -0.61
0.54 0.32 1.42 1.47 2.02 1.95 -0.74 1.11 0.87 0.3 -1.55 -1.24 -1.86 -1.4 -1.03 -1.87 -0.25 -2.17 -1.96 -2.26 -2.27 -1.34 -2.09 -2.09 -1.64 -0.99 -0.8 -0.24 -0.18 -0.18 -0.47 -0.45 -0.2
0.98 -0.06 0.84 0.69 1.49 1.36 -0.15 0.88 0.55 -0.07 -0.68 -0.4 -0.53 -0.93 0.06 -0.88 -0.84 -0.63 -0.84 -0.89 -0.72 -0.27 -0.25 -0.75 -0.13 -0.36 -0.46 -0.46 -0.23 -0.42 -0.49 -0.87 -0.4
1.32 -0.08 1.4 1.08 1.81 1.55 0.21 1.16 0.49 -0.17 -1.21 -0.75 -1.07 -1.48 -0.92 -0.69 -0.8 -0.69 -1.23 -1.65 -1.17 -1.21 -1.25 -0.14 -0.39 -0.87 -0.62 -0.94 -0.9 -0.75 -1.0 -0.75 -0.34
0.38 -0.27 1.36 1.55 1.79 2.11 -1.59 0.93 0.48 0.91 -1.18 -1.72 -2.17 -2.03 -0.62 -2.37 -0.97 -0.79 -1.49 -1.2 -0.86 -1.89 -2.23 -2.25 -1.11 0.05 -0.09 -0.16 -0.29 -0.77 -0.44 -0.36 -0.69

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.