Heatmap: Cluster_450 (HCCA cluster)

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(Showing raw values)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
0.19 0.14 0.05 0.07 0.15 0.09 6.9 0.08 0.05 0.09 3.44 8.93 6.4 10.08 4.06 5.64 9.43 6.47 6.48 6.18 6.66 8.17 6.94 4.59 4.72 7.52 9.72 6.67 7.94 8.49 6.88 7.11 10.26
10.61 7.25 6.14 4.33 6.75 7.19 32.72 6.28 7.04 6.51 38.82 36.45 45.74 27.31 33.93 45.62 41.19 38.69 35.57 34.71 34.6 40.28 39.69 18.5 38.41 32.21 33.71 35.52 42.65 45.84 36.29 34.23 45.26
3.01 2.6 1.96 1.55 1.56 2.84 11.29 0.57 0.56 1.18 12.24 10.91 11.92 8.9 16.92 12.36 22.68 12.3 16.66 19.97 16.37 5.17 15.32 7.49 13.36 28.7 27.29 20.67 22.47 21.9 19.14 18.89 21.45
6.34 5.95 6.04 4.43 4.89 4.58 11.09 2.84 2.86 3.46 10.54 10.34 13.94 11.71 17.76 15.88 19.42 17.81 15.6 17.19 15.54 5.9 14.1 10.73 15.13 18.35 17.11 16.33 18.43 18.85 17.06 16.95 17.92
0.27 0.3 0.13 0.25 0.16 0.15 2.81 0.08 0.06 0.11 3.43 3.32 3.32 2.35 3.1 4.56 5.46 4.27 4.53 4.99 4.73 1.67 2.75 2.46 2.78 5.76 5.65 4.41 5.13 5.62 4.31 4.87 5.64
0.41 0.24 0.44 0.33 0.29 0.11 14.49 0.07 0.04 0.36 8.4 11.55 12.79 14.11 8.46 12.75 14.11 7.7 9.89 11.5 10.4 11.33 13.31 5.05 10.46 10.46 12.68 8.16 9.36 11.84 9.73 9.27 12.47
0.48 0.43 0.45 0.28 0.56 0.61 3.09 0.1 0.19 0.24 2.99 3.65 3.04 3.48 3.6 4.33 5.56 3.94 3.52 3.21 2.53 3.75 2.71 2.25 3.03 3.31 3.75 2.88 2.8 4.21 3.7 3.96 3.43
9.92 9.96 7.05 5.38 6.98 6.75 21.76 7.34 6.16 7.0 39.15 37.72 29.36 26.11 24.46 26.98 41.82 31.17 35.52 38.24 33.68 43.67 38.04 23.21 41.42 36.18 36.04 39.22 51.14 51.55 39.46 40.83 53.92
0.84 1.11 0.38 0.61 0.26 0.43 4.69 0.1 0.25 0.4 5.27 6.66 4.74 6.93 3.34 7.31 5.43 6.62 6.53 6.56 5.97 7.36 5.13 3.4 3.54 5.31 5.87 5.41 7.57 8.78 5.42 6.99 7.7
1.11 0.66 0.62 0.55 0.37 0.24 9.49 0.27 0.13 0.27 5.29 8.02 4.83 4.92 12.64 5.73 8.93 7.0 5.99 7.08 7.71 7.9 8.29 5.31 6.3 6.36 8.07 6.2 6.14 7.42 6.27 5.21 8.43
8.91 8.87 7.91 7.35 7.54 10.01 28.49 7.45 7.43 8.54 41.96 33.97 28.2 38.71 20.74 42.19 33.79 46.88 38.36 53.25 35.73 38.85 24.22 15.02 29.11 32.28 35.66 31.01 45.65 57.1 31.98 33.94 50.95
0.42 1.3 0.51 1.29 0.62 0.24 43.92 0.18 0.05 0.52 30.41 61.81 50.24 43.12 60.07 42.69 58.8 31.85 39.28 43.59 32.65 62.01 57.58 50.09 49.19 48.3 49.02 44.72 60.95 66.87 55.76 54.11 57.48
4.24 4.38 3.63 6.8 6.18 7.28 22.52 3.25 2.67 8.14 42.08 38.24 29.16 28.7 49.57 51.1 44.94 41.95 53.99 59.27 55.54 27.6 22.7 13.53 33.94 35.62 44.01 32.9 41.54 51.86 37.48 45.1 54.05
0.4 0.35 0.3 0.28 0.2 0.5 7.68 0.47 0.18 0.59 22.67 21.72 9.61 18.84 20.9 19.7 20.22 24.45 28.31 30.31 30.9 20.24 15.98 5.62 14.42 17.33 20.94 18.88 22.8 25.5 18.47 17.49 28.81
1.0 0.71 0.28 0.18 0.17 0.23 6.35 0.03 0.01 0.12 16.98 11.63 8.61 11.45 16.6 16.67 15.2 17.78 15.62 18.58 14.3 12.15 15.82 6.1 8.93 18.62 18.64 17.52 16.02 18.81 19.27 19.13 19.2
0.63 0.58 0.93 0.37 0.39 0.49 5.71 0.9 0.32 0.91 4.76 8.05 3.97 8.9 4.4 5.98 6.5 6.52 6.32 7.26 5.3 8.72 3.86 4.03 3.45 7.25 7.22 8.04 8.0 9.07 6.27 6.22 8.57
0.67 0.98 0.63 0.79 0.75 1.15 17.41 0.42 0.45 0.66 12.06 16.97 18.2 15.48 20.59 18.5 18.65 13.08 14.57 13.5 15.64 18.45 14.94 10.15 20.94 14.63 15.18 10.26 13.03 15.09 12.24 9.29 16.69
5.61 4.92 3.42 3.04 1.9 2.93 46.29 1.85 1.18 2.35 17.92 33.18 34.71 32.56 36.21 25.43 37.44 21.14 22.6 21.48 20.16 34.23 28.34 25.29 46.9 30.94 31.4 25.8 35.28 43.7 23.81 23.61 35.85
3.18 3.28 2.56 3.33 3.29 4.39 14.27 2.74 2.58 2.9 10.29 17.45 13.36 18.38 9.15 10.9 16.74 11.59 11.39 12.58 11.07 17.32 15.25 9.46 11.15 11.94 14.14 8.7 12.66 13.55 9.18 7.39 11.24
1.93 1.83 1.36 0.56 1.21 2.33 5.06 0.81 1.07 2.06 9.41 7.73 8.46 7.34 5.05 5.55 8.24 7.73 10.81 5.5 10.42 7.24 8.46 9.44 10.88 7.14 7.51 7.59 7.97 11.98 8.1 7.38 10.83
0.36 0.58 0.21 0.19 0.11 0.11 1.88 0.21 0.08 0.15 2.97 2.51 3.16 2.66 1.97 3.09 4.05 2.42 2.23 2.52 2.57 3.32 4.34 1.35 3.4 2.21 2.8 3.64 4.64 4.69 3.04 2.99 4.98
2.41 1.8 1.05 1.05 0.83 0.62 12.37 0.61 0.69 0.78 8.84 15.4 11.87 10.68 13.77 11.89 15.63 10.08 8.74 8.22 8.93 16.22 17.74 7.45 14.91 10.58 11.74 8.67 14.27 16.73 10.47 8.8 13.65
1.3 0.67 0.83 0.42 0.68 0.42 8.95 0.23 0.46 0.26 6.38 8.31 7.86 8.18 10.69 9.05 10.28 7.27 6.53 6.72 8.33 10.45 10.03 6.84 9.28 7.56 8.65 4.41 7.37 8.94 5.7 5.18 8.68
0.28 0.05 0.0 0.0 0.06 0.02 2.0 0.0 0.02 0.0 1.96 3.56 3.73 8.11 2.84 2.66 4.31 2.07 2.61 3.35 2.36 4.97 5.11 1.99 1.99 3.72 4.9 3.04 4.35 4.77 3.85 3.13 3.98
0.22 0.27 0.23 0.18 0.15 0.11 8.5 0.15 0.09 0.27 6.18 8.88 10.08 11.28 3.92 7.33 10.01 6.31 7.19 7.98 8.01 9.82 11.81 9.93 6.03 6.59 8.09 5.53 6.57 6.2 5.23 4.47 7.04
1.11 0.68 0.4 0.49 0.33 0.45 14.65 0.24 0.32 0.12 12.13 15.9 14.8 21.07 13.77 22.25 19.51 14.9 16.33 21.21 16.83 17.55 19.31 7.73 17.28 12.82 15.96 10.68 12.2 13.64 11.13 10.38 13.18
1.24 0.91 0.65 0.73 0.77 0.62 5.89 0.75 0.78 0.7 11.3 10.38 6.24 7.65 14.85 10.78 9.01 10.08 9.37 11.82 10.54 7.37 8.73 7.81 5.49 9.31 10.42 12.61 11.58 10.34 10.87 9.75 12.11
10.74 10.3 6.71 8.08 7.26 8.82 24.39 4.68 4.58 9.54 50.88 30.75 23.47 33.79 47.5 45.19 39.86 57.48 57.02 63.45 60.41 25.2 22.85 12.82 31.65 38.13 42.98 49.6 48.0 53.25 54.84 47.45 63.44
4.98 4.81 3.91 4.28 4.9 5.77 12.5 3.66 2.85 5.36 16.69 16.3 9.27 11.45 19.94 15.68 17.29 20.33 15.74 18.33 19.13 10.15 23.54 5.34 8.91 14.91 19.21 24.48 22.62 25.65 22.49 21.55 29.37
0.51 0.35 0.15 0.31 0.24 0.09 8.73 0.0 0.11 0.4 6.92 12.17 10.6 15.14 8.58 15.0 13.78 8.94 9.35 15.88 8.06 12.06 9.04 6.4 10.95 9.06 11.03 8.38 11.92 12.94 9.37 8.8 12.39
0.77 0.66 0.49 0.5 0.59 0.52 4.99 0.41 0.37 0.59 5.16 5.32 4.23 6.62 3.89 4.11 5.0 3.54 4.46 4.63 4.48 4.89 4.76 4.77 5.12 6.26 5.77 3.68 6.24 6.6 3.78 3.61 6.8
0.07 0.13 0.06 0.02 0.05 0.02 0.43 0.02 0.05 0.39 0.8 0.62 0.6 0.58 0.19 0.47 1.16 0.61 0.52 0.49 0.57 0.83 0.77 0.26 0.71 0.74 0.79 0.91 1.2 1.38 0.89 0.88 1.43
26.61 22.98 22.89 23.63 28.24 22.56 89.49 17.36 17.9 15.61 122.72 86.87 119.28 103.86 70.69 83.73 133.07 106.25 95.31 97.75 80.43 123.43 131.39 76.82 106.9 94.34 104.0 101.27 149.79 161.98 112.11 105.06 179.5
0.12 0.11 0.02 0.12 0.06 0.06 5.94 0.12 0.04 0.12 2.9 6.52 3.69 4.58 4.66 3.07 8.72 2.5 4.56 6.13 3.19 10.48 6.72 3.72 4.97 8.04 7.71 7.51 10.35 9.44 8.06 7.18 10.01
10.0 8.66 7.9 9.31 8.75 13.18 48.97 6.74 6.95 8.09 38.56 46.1 39.07 55.94 39.0 40.36 56.91 43.62 43.96 52.08 42.98 52.51 42.14 19.53 58.84 43.71 45.04 41.76 50.0 55.12 43.6 45.15 55.94
2.13 2.07 1.35 1.4 1.29 1.73 6.11 1.01 1.18 2.48 14.74 7.38 7.27 8.35 10.28 13.81 9.12 13.56 12.03 11.88 11.14 9.86 6.15 3.1 7.92 10.11 10.8 8.99 11.85 15.66 11.56 10.88 12.74
2.73 3.52 1.06 1.42 1.71 2.55 7.95 1.41 1.49 1.43 12.26 13.54 7.36 18.69 13.12 18.64 15.57 15.73 10.76 18.56 12.31 17.63 11.55 6.76 8.96 15.79 16.9 21.31 15.83 17.42 18.35 20.01 16.63
0.05 0.09 0.07 0.06 0.09 0.0 13.12 0.0 0.0 0.0 6.86 15.54 5.83 12.14 8.07 6.11 10.88 3.86 5.22 5.26 8.27 12.49 9.63 8.21 4.97 12.33 11.62 12.48 16.31 17.89 12.31 11.2 24.51
0.03 0.01 0.02 0.02 0.07 0.0 0.19 0.05 0.03 0.06 0.5 0.55 0.33 0.48 0.26 0.38 0.76 0.3 0.61 0.36 0.3 0.39 0.93 0.14 0.37 0.8 0.82 0.79 0.99 1.35 0.75 0.63 1.65
1.15 0.79 0.83 0.98 0.99 0.94 5.07 0.53 0.63 0.33 7.97 5.92 5.74 5.02 6.25 7.31 9.35 7.68 8.27 5.5 7.92 6.46 4.41 5.36 6.05 5.98 6.99 5.28 5.84 6.25 5.1 5.32 5.66
0.61 0.69 0.59 0.48 0.69 0.73 9.82 0.28 0.24 0.27 13.19 10.65 12.21 11.69 13.14 14.26 18.57 13.49 13.37 15.26 15.08 12.55 8.18 9.04 9.67 18.08 17.83 17.08 21.56 17.2 13.98 11.77 21.22
0.06 0.05 0.0 0.05 0.03 0.24 5.56 0.2 0.0 0.0 1.73 2.51 3.66 4.32 3.87 2.12 4.86 3.84 1.9 3.37 2.89 3.35 6.37 3.93 2.88 4.01 4.44 3.94 4.06 4.03 3.84 3.82 5.0
1.33 1.31 1.3 1.32 1.56 1.95 6.25 1.76 1.55 1.21 4.92 8.19 7.8 6.93 9.15 8.21 9.98 7.58 7.61 7.23 7.85 9.13 7.32 7.15 8.37 5.94 7.22 5.71 7.74 9.25 7.36 6.66 7.9
1.61 1.93 1.44 1.39 1.42 1.76 13.94 0.89 1.37 1.06 24.07 17.07 14.78 17.04 12.98 20.62 24.53 22.86 29.2 20.76 25.46 13.01 12.98 7.85 21.36 17.49 18.77 15.14 19.23 20.68 15.67 13.95 19.65
3.88 4.5 4.89 2.51 2.2 3.43 53.57 2.93 1.48 4.81 28.81 55.46 43.02 44.25 35.25 76.33 43.3 33.11 46.7 32.55 48.93 46.28 73.63 62.55 37.11 56.47 60.04 51.74 76.03 69.59 51.38 44.63 74.77
3.24 3.79 2.31 2.55 2.91 5.11 9.57 2.56 2.68 5.66 10.3 15.99 10.31 17.81 9.8 13.11 14.47 12.27 12.29 15.68 11.59 15.03 13.05 6.0 13.41 9.18 11.82 8.14 11.17 13.32 10.53 8.88 11.68
1.58 0.65 0.37 0.23 0.29 0.39 18.12 0.64 0.29 0.27 16.77 31.44 11.74 16.41 26.82 18.3 18.64 18.03 18.37 16.69 17.11 25.58 24.92 10.07 15.75 17.74 21.62 16.63 24.0 22.08 18.31 13.27 22.24
0.12 0.22 0.16 0.31 0.24 0.21 3.63 0.18 0.16 0.17 8.3 5.61 6.02 4.22 5.07 7.22 10.84 6.89 9.75 8.0 10.15 4.26 3.99 2.01 4.9 7.48 9.94 7.47 8.86 11.78 8.7 8.49 14.23
0.21 0.01 0.01 0.04 0.01 0.02 2.06 0.08 0.14 0.0 1.49 3.27 3.41 4.7 1.9 4.2 3.45 3.08 3.31 2.74 3.26 3.53 3.99 2.74 1.97 2.96 3.43 2.07 2.74 3.12 2.24 1.92 3.03
16.5 20.29 15.72 20.74 20.83 20.66 23.65 17.71 17.03 19.54 50.26 38.29 34.78 35.39 39.19 36.71 50.06 50.64 44.38 39.45 39.1 37.38 38.52 30.76 38.32 51.16 55.78 45.98 60.27 56.81 48.84 42.54 54.45
3.29 3.2 2.57 2.68 3.75 5.31 9.96 4.73 4.23 4.12 28.53 22.15 8.1 25.08 25.37 23.87 24.43 34.68 28.64 25.16 26.82 18.05 11.86 7.07 14.37 18.71 23.38 15.93 20.37 22.08 15.73 15.2 25.13
5.11 4.28 3.9 4.75 4.36 2.85 22.84 2.17 1.61 3.32 42.03 29.96 19.99 34.0 36.88 46.66 33.28 46.98 42.24 41.23 41.65 29.76 22.7 12.58 29.24 34.09 36.13 39.4 44.75 42.5 38.6 38.83 42.95
0.31 0.16 0.1 0.03 0.1 0.0 4.49 0.07 0.02 0.26 4.3 7.59 5.22 4.94 5.65 5.3 8.01 5.78 3.43 2.9 6.38 5.56 3.66 5.6 4.23 4.33 6.18 5.44 5.37 4.83 5.4 5.99 7.23
2.99 3.0 2.09 1.78 2.5 1.89 19.87 1.23 0.54 1.55 14.67 16.5 17.76 19.61 14.63 28.14 24.59 18.29 18.68 17.46 14.14 21.79 16.73 10.89 21.68 20.52 20.93 21.07 26.74 23.95 20.21 20.31 28.17
3.81 3.76 2.31 2.68 2.69 2.4 19.94 1.36 1.14 2.21 20.11 20.6 19.08 28.99 23.79 23.19 29.59 17.65 20.51 21.1 24.54 22.64 23.14 17.58 28.18 18.04 20.25 23.45 27.29 29.41 22.01 21.23 25.65
0.36 0.49 0.28 0.53 0.35 0.26 5.45 0.13 0.06 0.2 1.29 4.51 3.4 4.9 3.2 3.07 4.74 3.66 2.77 3.1 2.64 4.45 3.99 1.73 4.53 4.26 4.63 2.93 4.68 5.15 3.56 3.57 4.83
14.69 16.87 10.94 10.38 13.42 14.81 64.26 13.21 13.24 11.18 117.74 90.81 80.83 101.65 68.94 121.64 73.03 119.82 113.59 109.26 100.52 85.33 90.22 40.2 66.4 73.46 80.94 65.46 91.79 95.45 74.69 71.33 108.92
7.42 8.02 8.09 7.26 9.33 6.45 25.1 6.1 6.51 6.58 37.91 33.52 25.77 32.42 42.87 33.78 33.06 46.17 34.49 36.71 27.41 35.18 29.0 17.21 24.04 36.06 33.68 30.03 40.37 40.86 34.59 34.6 42.04
3.04 2.86 1.77 1.9 1.84 1.41 22.46 1.34 1.56 1.74 17.85 15.66 16.46 13.51 21.96 18.19 20.87 17.48 17.36 18.74 20.09 18.63 17.65 10.97 19.76 15.14 17.89 16.96 19.62 18.94 18.11 14.8 18.13
4.31 4.82 3.39 3.86 2.69 3.4 54.94 1.1 0.84 2.31 37.64 56.32 48.75 48.09 40.15 47.31 61.61 35.41 42.8 49.65 40.04 54.53 47.73 31.43 54.88 38.85 41.29 40.42 52.84 50.73 36.09 31.54 56.21
4.91 3.47 3.06 2.31 2.84 4.27 5.36 2.84 3.25 8.7 9.27 7.47 4.51 8.69 9.49 6.32 13.22 7.75 7.61 9.62 8.31 9.44 8.11 3.52 5.54 13.16 13.51 14.13 18.7 19.72 16.54 15.31 22.81
13.16 11.15 12.5 11.22 14.97 14.43 17.05 12.22 9.73 24.56 51.55 49.37 28.36 23.76 36.12 26.29 51.11 29.47 30.07 25.54 25.81 33.37 36.67 14.43 48.31 54.22 55.94 53.28 67.53 71.94 55.97 51.31 79.6
0.21 0.31 0.33 0.11 0.17 0.07 5.11 0.13 0.22 0.16 10.2 7.64 7.72 5.71 3.58 8.37 11.0 8.41 10.9 8.56 12.4 7.99 8.51 3.32 8.51 8.55 10.38 7.17 10.0 12.72 7.2 7.04 10.95

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)