Heatmap: Cluster_308 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - - -2.41 - - -0.59 - 1.74 - 0.77 0.16 -0.29 0.52 0.0 - -0.62 1.79 -2.68 -1.81 1.18 -1.93 0.0 1.91 -1.55 -1.6 2.5 2.12 -2.49
- - - - - - - -3.52 - - -0.95 - 1.0 - 2.94 - -2.45 - - - -1.74 -1.44 -1.8 - 0.95 -0.45 -0.56 2.65 0.16 -2.16 2.83 1.63 -1.49
- - - - - - -7.43 - - - -0.01 -2.48 0.49 -7.39 1.38 1.85 -3.11 1.23 0.64 0.46 0.61 -6.33 -0.54 -4.44 0.69 -0.86 -0.01 2.44 -2.06 -3.99 2.22 1.45 -2.21
- - - - - - - - - - -1.03 -4.73 2.06 - 2.96 1.85 -2.16 0.39 -0.25 0.22 0.68 -0.99 -2.73 -2.23 1.56 -4.42 -2.57 1.16 -0.83 -2.64 1.68 0.54 -2.52
- - - - - -7.77 - -8.41 - -7.08 -0.53 -3.98 0.14 - 0.68 0.78 -3.15 -0.13 -0.3 -0.15 -0.14 -5.99 -0.27 -5.23 -0.12 0.15 0.86 2.97 -1.99 -3.44 2.78 2.01 -1.43
- - - - - - -7.27 - - - -0.26 -3.06 -0.59 -5.25 0.54 0.87 -2.77 0.48 -0.05 -0.3 0.1 -4.99 -0.2 -5.5 0.2 -0.61 0.16 3.03 -1.81 -2.93 2.82 1.97 -1.81
- - - - -8.41 - - - - - 0.46 -2.49 -3.45 -3.98 - -0.57 -2.61 1.66 1.55 1.71 1.8 -0.86 - -3.93 -2.91 0.81 -0.37 1.15 -1.73 -3.22 2.01 2.72 0.08
-3.35 -2.33 -3.5 -3.64 -3.78 -4.77 0.0 -3.06 -4.03 -3.84 -1.53 -1.91 -0.65 -1.9 3.91 -0.56 -2.88 0.19 -1.59 -1.51 -1.2 -1.73 - -0.62 -1.55 0.48 0.23 1.36 -2.72 -3.28 1.32 1.19 -3.16
- - - - - - - -4.88 -5.03 - -1.91 - 1.46 - 2.4 0.59 -2.07 0.14 0.19 -1.31 0.23 -2.43 -0.83 - 1.84 -0.87 -0.76 1.66 0.88 -0.18 2.03 1.54 -0.47
- - - - - - - - - -4.97 -1.48 -3.87 2.24 - 1.85 -0.63 -3.03 -0.71 -0.2 -1.96 -2.61 0.02 -1.18 0.2 1.92 -1.66 -3.45 2.53 -1.12 -4.99 2.58 1.31 -4.77
- - - - -13.09 - -8.69 -7.06 - -3.73 -1.9 -2.71 0.74 -4.44 2.78 0.4 -3.19 -1.08 -0.53 -0.23 -0.37 -2.55 -1.26 -2.16 0.68 -1.02 -1.19 1.87 -1.62 -3.44 2.94 2.17 -3.43
- -2.95 - - - - -3.27 - - - -1.6 -2.45 -3.3 -1.22 3.18 -1.53 -0.76 -0.63 -1.35 0.13 0.41 -2.81 - - -1.82 -3.58 -3.83 2.38 0.58 0.37 2.44 1.65 0.16
- - - - - - - -2.39 - - -3.02 -2.54 1.84 - -0.69 -3.84 -1.32 - -3.79 -2.63 -2.6 -0.49 -0.82 -4.01 1.35 -1.17 -0.86 3.05 -2.03 -2.23 3.19 2.16 -2.18
- - - - - - - - - - -2.29 -2.49 -1.39 -1.68 2.69 -1.12 0.6 -1.78 -2.64 -3.18 -2.28 -0.89 2.08 0.5 -1.77 0.13 0.14 1.89 -1.86 -1.68 2.13 2.35 -1.88
- - - - - - - - - - -2.12 -3.01 -1.74 -2.74 2.88 -3.42 -0.51 -2.93 -5.36 -2.84 -2.22 -0.01 1.67 -2.41 -1.97 -0.02 -0.18 2.33 -1.83 -1.31 2.34 2.6 -2.18
- - - - - - -6.83 - - - -0.31 -3.78 -0.9 - 0.74 0.37 -2.02 0.14 0.13 -0.82 -0.0 -1.57 2.78 -0.74 -0.98 -1.44 -1.63 2.65 -4.16 - 2.83 1.07 -4.1
- - - - - - -7.63 - - - -2.58 -8.06 -1.9 -4.86 2.88 -3.5 -4.15 -2.09 -3.14 -2.42 -2.14 -4.91 -0.83 -1.68 -2.46 -1.34 -1.57 2.33 -2.33 -3.75 3.13 3.06 -4.38
-9.45 -11.08 - - -10.62 - -12.27 - - -8.35 -1.39 -5.9 -0.88 -5.33 2.81 -1.67 -3.81 -1.81 -1.99 -2.61 -1.0 -4.43 -2.59 -0.98 -2.53 -2.69 -3.2 2.58 -2.12 -3.43 2.99 3.0 -5.01
- - - - -7.58 - - - -5.42 - -3.66 -0.89 2.27 -0.32 0.66 -1.11 -1.91 -1.25 -2.44 -3.18 -4.47 1.36 -3.21 -4.66 2.61 -1.41 -0.77 2.05 -2.08 -2.84 2.52 1.82 -3.38
- - -10.88 - -10.66 - -7.34 -10.16 -10.32 - -1.35 -1.85 -0.0 -4.1 3.8 1.17 -3.18 -0.24 -1.09 -0.53 -1.01 -0.9 -4.82 -1.0 -0.32 -0.84 -1.16 1.55 -2.11 -3.24 1.65 1.65 -4.69
- - - - - - -10.34 - - - -1.61 -2.4 1.76 -4.18 2.98 1.45 -3.76 -0.83 0.2 0.16 0.21 -2.3 -1.17 -1.34 0.9 -1.46 -1.67 1.32 -2.6 -4.59 2.37 1.53 -4.35
- - - - - - -2.98 - - - -1.19 -3.14 -2.41 - 3.04 -0.97 -5.14 - - -3.22 - -4.07 -3.25 - -0.29 -4.17 -1.79 2.09 1.51 1.55 2.67 2.12 0.24
- - - - - - -4.33 - - - 0.32 -1.22 1.14 - 2.15 1.93 -2.05 -0.84 -1.09 -1.15 -0.46 -3.82 -2.03 -2.47 0.96 -0.91 -0.34 2.29 -2.31 -1.44 2.48 1.6 -1.01
- -4.91 - - - - - - - - -0.19 -4.26 -1.84 -2.25 -1.04 0.17 0.41 -1.42 -0.09 0.18 -0.96 -1.15 0.22 -4.18 0.28 -4.3 -4.75 2.76 -0.48 -4.46 3.34 2.34 -7.23
-7.34 -5.52 -8.36 -11.11 -11.64 - -6.19 - -8.89 -9.76 -2.15 -2.72 -1.46 -6.0 3.57 0.49 -1.41 -0.63 -0.28 0.84 0.09 -1.57 -1.65 -3.82 -0.85 -2.77 -3.04 1.49 -0.26 -0.69 1.74 2.27 -2.0
-8.23 -10.05 -8.68 -8.69 -7.79 -6.34 -6.46 -5.78 -6.55 -7.05 -1.88 -3.09 -0.93 -4.16 3.56 1.19 -1.32 -0.62 -0.01 0.77 0.03 -1.44 -1.17 -3.4 -1.14 -2.2 -2.41 1.2 -0.24 -0.75 1.61 2.11 -1.9
-10.6 -6.79 -10.26 - -7.31 - -4.13 -8.71 -7.94 -4.94 -0.82 -1.36 -0.55 -4.27 3.63 -0.44 -3.33 -1.0 0.29 -0.69 -0.5 -2.37 -1.59 -4.16 1.22 -2.64 -3.07 2.25 -0.02 -1.86 2.05 0.4 -1.77
- - - -3.43 -4.72 - -3.33 - - -1.9 0.41 0.89 0.89 -0.47 0.31 1.89 -2.78 -1.03 1.12 -0.37 0.98 -2.73 - -2.53 1.87 -3.24 -2.19 2.13 -0.28 -3.25 1.36 1.99 -3.26
- - - - - - - - - - 0.36 -0.76 -4.25 -1.15 - 0.77 -2.37 2.23 1.54 1.77 2.23 -0.98 - -2.86 -3.07 0.12 -1.3 0.64 -2.9 -4.16 1.33 2.46 -0.01
-2.09 -2.26 - - -6.01 - -3.25 - -3.2 - - -0.48 1.6 - -0.26 -0.24 -4.57 - - - -3.26 1.39 -2.31 -0.81 1.91 -1.44 -1.65 2.6 1.26 -0.45 2.31 1.86 0.18
- - - - - - - - - - -0.26 - -0.01 - -0.28 2.22 -4.67 -0.21 1.19 0.05 1.01 -3.11 - - -2.14 -5.03 - 1.99 0.02 -3.05 3.21 2.03 -0.59
- - - - - - - - - - -1.88 -5.21 1.26 - 3.47 -0.06 -1.3 -0.74 -2.91 -2.71 -2.36 -2.64 0.82 -2.76 0.9 -0.6 0.05 2.0 -4.61 -5.58 2.51 0.42 -5.15
- - - - - - - - - - 0.16 -1.75 -4.73 -2.57 - 0.37 -2.07 2.23 1.71 1.94 2.33 -1.36 -5.83 -2.09 -3.62 -0.39 -1.77 0.84 -3.21 -3.53 1.53 2.51 -0.61
-3.04 -6.51 -0.85 -1.36 -1.59 -3.88 -3.05 -5.76 -5.89 -5.26 -1.26 -4.2 -3.24 -0.66 3.96 0.46 -5.24 0.0 -0.42 0.44 -0.15 -2.11 -6.48 -4.41 -4.34 -0.28 -1.15 0.72 -1.2 -2.89 0.87 1.63 -1.43
- - - - - - - -0.64 -3.63 0.0 - -0.95 -1.79 - 4.1 - -1.27 - - - - - -5.15 -4.28 - -2.87 -3.61 1.78 0.39 -3.35 2.75 -0.05 -3.69
- - - - - - - - - - - - - - 2.09 - -4.41 - - - - - - - - -4.37 -1.96 3.39 -0.98 - 3.26 2.97 -
-7.87 -5.78 - - - - -8.99 - - -10.4 -2.49 -5.02 -2.19 -5.97 2.34 -2.28 -3.89 -2.08 -2.12 -2.57 -1.31 -4.24 -0.27 -3.85 -1.47 1.07 1.45 2.96 -2.62 -3.11 3.17 1.51 -2.97
- - - - - - -5.69 - - -5.68 -0.48 -0.78 0.55 -1.08 2.85 1.85 -1.93 0.37 0.3 -0.16 0.68 -0.68 0.66 -0.11 0.79 -1.49 -1.45 1.53 -1.14 -1.61 1.37 0.5 -1.36
-11.16 -9.83 -11.02 - - - - -12.3 - - -1.73 -6.55 0.7 -7.13 2.35 -0.42 -3.18 -1.1 -1.68 -2.0 -1.73 -4.77 -1.25 -2.42 -0.11 -0.64 -1.28 2.76 -1.38 -4.21 3.14 2.36 -5.14
- -10.5 - - - - -5.99 - - - -1.51 -2.51 0.31 -3.96 3.95 1.79 -2.89 -0.52 0.06 1.1 0.08 -1.41 -0.8 -1.74 -1.01 -4.11 -4.22 0.11 -1.79 -1.81 0.42 1.13 -2.85
- - - -6.92 -10.31 - - -4.06 - -0.11 -1.46 -3.32 -0.08 -4.46 3.1 0.3 -3.32 -0.51 -0.31 -0.08 -0.31 -3.34 -1.39 -3.5 1.24 -1.14 -1.33 1.67 -1.37 -3.34 2.77 1.59 -3.48
-1.33 -4.52 -3.41 - - - -4.23 - - - -1.0 -1.86 1.07 -3.17 3.22 1.2 -3.94 1.69 -3.2 0.64 0.23 -1.41 - -3.42 -1.81 -2.08 -1.67 1.95 0.1 -0.54 1.28 0.19 0.21
- - - - - - - - - - 0.39 -1.94 -3.96 -2.05 - -0.6 -2.58 1.04 1.47 1.42 1.99 -1.2 - -1.83 -3.37 -0.75 -2.14 1.38 -1.91 -2.85 2.27 3.05 0.13
- -6.77 - -7.18 - - -7.45 -6.5 - - -0.66 -2.97 1.55 -5.22 2.81 2.05 -3.44 1.0 0.68 0.36 0.94 -1.08 -2.54 -2.79 1.8 -3.84 -3.27 1.01 -3.05 -3.8 1.65 0.37 -2.83
- - - - - - -2.15 - - - -0.82 - 0.33 -1.42 2.45 1.98 -3.59 - -1.45 -0.19 -1.02 -0.49 -0.74 -0.87 -2.06 -1.47 -1.61 2.09 -0.27 -2.19 2.47 2.5 -4.39
- - - - -4.56 - - -2.76 - - -0.49 -0.91 0.78 - 2.74 0.21 -3.83 0.55 -0.94 - -0.39 -0.99 - - 0.9 -1.74 -2.53 2.22 0.2 0.53 1.85 2.33 -1.1
-9.66 -10.28 -10.8 -10.41 - - -6.78 - - -7.74 -1.07 -5.98 -0.85 -4.81 3.04 -1.22 -3.85 -1.02 -2.67 -2.75 -1.43 -4.55 -1.1 -1.08 -1.84 -1.21 -1.49 2.33 -2.21 -3.83 2.9 2.84 -4.6
- -6.74 - - - - -7.12 - - - -2.63 -3.32 -1.06 -1.98 3.59 -4.98 -3.55 - -1.74 -1.8 -2.04 -2.46 0.36 -4.15 -2.05 0.04 -0.42 2.61 -1.27 -3.97 2.52 1.66 -4.92
- - - -13.03 - - -11.44 -9.82 - -5.33 -1.16 -2.68 0.36 -4.54 3.43 0.36 -2.98 -0.54 -0.51 0.11 0.11 -2.93 -1.41 -3.34 0.91 -2.35 -2.33 1.39 -1.06 -2.85 2.57 1.63 -2.6
- -3.77 -3.06 - -6.12 -4.81 -3.13 - -5.09 - -1.09 -2.1 -0.95 - 2.7 -1.76 -3.41 -0.79 0.8 -1.77 0.6 0.53 -0.34 -3.93 0.51 -0.45 -0.67 2.32 0.66 0.56 1.59 1.77 -0.27
- - - - -5.44 - - - - - 0.13 -2.88 -2.82 - 1.92 -0.82 -0.63 - -2.9 -2.97 -4.26 -3.81 -1.32 -1.2 -0.91 -1.69 -0.49 2.78 -0.49 -0.25 2.92 2.92 -1.72
- - - - - - - - - - -0.12 - -0.23 - 2.68 2.41 -3.51 - - - - - - 0.1 0.39 -3.07 -1.76 2.52 - - 2.17 2.51 -0.55
- - - -7.43 -10.68 -7.92 - -7.11 - -6.69 -1.59 -3.95 -2.7 -4.68 3.32 -0.32 -3.2 -0.69 -1.63 -1.09 -1.13 -2.44 -7.31 -3.79 -1.79 -0.67 -0.77 2.46 -1.41 -2.61 2.57 2.52 -2.99
- - - - - - - -2.32 - -1.57 - - -1.27 -2.69 0.12 - -1.3 -2.62 - - - - - -2.94 - 0.35 0.95 3.65 -0.78 -1.26 3.47 1.06 -2.63
- - - - - - - - - - 0.47 - -1.02 - 0.6 1.97 -4.62 -0.45 - 0.8 1.08 - -1.64 - 0.1 -4.55 -2.88 2.09 - - 2.84 2.94 -1.42
- - - - - - - - - -4.83 -0.42 -1.28 0.05 -2.86 2.64 1.51 -1.98 1.13 0.3 -0.06 0.79 -0.69 0.21 -2.98 0.38 -2.73 -2.36 2.05 -0.63 -0.5 1.93 0.88 -0.97
- - - -2.73 -4.28 -4.45 -5.31 - - - - -4.3 0.79 - -1.97 - -1.94 -4.22 - - -1.55 -3.07 2.79 -2.96 0.79 -2.5 -3.62 2.75 -2.32 - 3.53 1.25 -
- -9.54 - - - - - - - - -2.49 -7.75 -3.89 - 1.79 -4.72 -3.76 -3.07 -3.63 -3.18 -2.2 -5.68 -1.17 -6.77 -2.4 0.59 0.99 3.26 -2.45 -3.04 3.46 1.79 -2.98
- - - - - - -7.15 -6.46 - - -0.31 -2.71 0.68 - 1.19 1.59 -3.05 0.39 0.19 0.18 0.2 -5.41 -0.46 -5.73 0.66 -0.55 0.38 2.67 -1.83 -3.37 2.44 1.76 -1.32
-5.64 - - -2.71 -3.76 - -3.95 - - - 0.9 -2.43 -4.31 -0.28 - 0.17 -2.81 2.68 1.02 1.1 2.19 -1.28 - -2.02 -5.19 0.51 -0.94 0.74 -2.73 -3.65 1.64 2.4 -1.25
- - - - - - -6.47 -8.26 -7.24 - -0.16 -2.09 -0.9 -1.79 2.43 0.25 -2.29 0.04 -0.33 -1.31 0.05 -4.03 -0.59 -4.34 -0.4 -0.61 0.05 2.24 0.11 -1.66 3.17 0.92 -0.39
- - - - - - -7.31 - - - -0.35 - 0.74 - 2.88 0.48 -2.12 0.52 -0.06 -0.24 -0.06 -5.12 -0.82 0.68 -0.46 -0.65 -1.17 2.19 -1.91 -5.49 2.38 1.71 -6.22
- -9.19 -9.35 -11.06 -10.57 - - -9.12 - -8.57 -0.89 -3.32 -0.38 -4.46 0.99 0.81 -3.42 -0.74 0.09 -0.02 0.07 -7.07 -0.23 -6.2 -0.48 -0.26 0.57 3.04 -1.81 -3.0 2.74 2.13 -1.33
-1.36 -0.48 -4.51 -4.84 -4.29 -4.1 -0.84 -3.1 -3.32 -4.55 -1.53 -1.25 0.13 -3.31 3.34 0.81 -2.05 -1.09 -0.86 -1.1 -1.06 -1.16 -0.75 0.92 0.47 -0.94 -0.65 1.55 -1.05 -1.33 1.34 1.36 -1.15
-8.37 -5.74 -6.77 -7.14 -11.07 - -3.33 -6.14 - - -3.11 -1.76 2.06 -1.59 -0.26 -2.0 -3.07 -3.19 -2.52 -4.67 -2.84 -1.21 -0.48 -2.07 1.8 -0.66 -0.71 2.89 -0.05 -1.17 2.84 1.95 -1.64
-5.13 -6.22 - -4.89 -6.87 - -5.48 - - - 0.46 - -0.94 - 0.14 2.35 -1.12 1.79 0.82 0.34 0.78 - -1.3 - -2.38 -1.44 -0.24 1.91 -3.53 - 2.57 2.12 -2.78
-9.09 -10.02 -8.89 -11.69 -13.2 - -6.3 - - -5.6 -0.61 -5.75 0.12 -5.52 3.67 -0.57 -3.81 -0.38 -1.67 -2.54 -0.75 -3.61 -0.94 -0.22 -1.46 -2.73 -2.65 1.77 -2.77 -4.61 2.34 2.33 -5.51
- - - - - - - - - - -1.14 -2.56 0.62 - 2.03 0.83 -1.95 -0.54 -1.58 -1.48 -0.18 -2.7 -1.51 -2.48 0.73 0.27 0.36 2.58 -1.11 -1.69 2.67 1.92 -0.53
- - - - - - - - - - - - - - - - -0.34 - - - -0.61 - - - - -2.33 -1.16 3.45 - -1.54 3.6 2.9 -
- - - - - - - - - - -2.71 - -1.93 - 2.2 -1.52 -3.41 -1.81 -1.7 -3.64 -1.94 -4.53 0.5 - -2.39 0.89 1.36 3.01 -3.11 -3.56 3.24 1.42 -2.81
-3.1 - - - - -3.55 - - -2.81 - 0.28 - 0.17 -2.39 -0.06 2.24 -1.72 2.16 1.23 0.33 0.8 -1.0 -1.19 -1.64 -0.35 -2.03 -0.75 2.03 -4.22 -4.39 2.06 1.59 -3.37
- - -7.22 -5.8 -9.45 - -4.11 - - - -2.43 -1.79 2.49 -1.47 -0.36 -2.48 -3.04 -3.61 -3.18 -4.02 -4.61 -1.05 -1.46 -1.82 2.01 -0.54 -0.48 2.82 -0.31 -1.19 2.54 2.01 -1.54

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.