Heatmap: Cluster_9 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - - - - - 1.93 - 2.44 - -2.58 2.08 -0.42 1.93 1.57 1.73 0.91 - -4.03 - 2.71 - -6.38 - - - - - -
- - - - - - -10.59 - - - 1.28 -1.5 1.52 -0.27 0.57 1.89 1.08 0.96 1.59 1.74 1.34 -2.3 2.45 -0.78 0.58 -2.09 -1.25 - - - - - -
- -5.47 - - -5.72 - - - - - 2.58 - 3.78 - -4.54 0.95 0.63 1.26 -0.02 -0.47 -0.61 - - - 2.29 -3.5 -4.77 - - - - - -
-3.37 -3.01 -2.59 -2.41 -2.47 -2.76 0.01 -4.0 -2.78 -2.41 1.82 0.84 0.69 0.33 0.33 1.45 -0.11 0.66 0.1 0.18 0.06 0.31 1.78 0.87 1.87 -1.1 -0.96 -1.94 -1.98 -2.33 -1.72 -2.4 -1.21
-6.52 - - -7.24 -7.66 - -3.32 -4.19 -6.86 -5.88 2.64 -1.87 0.27 -2.13 0.22 1.47 -1.3 2.13 1.35 1.47 1.45 -4.8 -3.99 - 1.09 -2.41 -1.69 -0.31 0.49 -0.69 -1.11 -1.32 0.72
- -4.27 -6.36 -8.2 -6.74 - -0.21 -2.85 - -1.37 2.25 0.41 1.27 -1.5 -0.3 2.13 0.88 1.89 1.29 1.49 1.32 -3.02 -1.04 - 1.27 -1.58 -0.95 -5.67 -3.66 -3.63 -4.78 -5.44 -3.91
- - - - -7.01 - -0.6 - - - 2.46 -3.24 0.29 -2.45 - 2.71 1.64 2.26 1.87 1.32 1.67 -2.07 -1.43 -4.13 -0.24 - -5.35 - - - - - -
-0.18 -4.5 -1.77 -0.94 -2.03 -2.91 -0.41 - -5.43 - 2.7 -2.71 1.68 -1.7 1.23 2.03 -0.5 0.48 1.92 1.6 0.59 0.5 - -4.27 0.6 -5.56 -4.54 -4.21 - - - - -
- - - - - - - - - - 1.33 - 1.96 -4.85 1.41 1.77 1.28 1.38 1.89 2.2 1.47 -8.76 -1.85 -4.33 1.68 -1.58 -0.87 - - - - - -
-5.23 -3.51 - - -4.47 -4.66 -3.57 - - - 2.35 -3.53 2.42 - 0.43 1.54 0.07 1.22 1.28 0.51 0.17 -0.66 -1.48 -0.78 2.37 -7.77 -6.26 -5.6 -1.38 -0.61 -4.62 - 0.77
-2.0 -0.63 -6.31 -5.42 -7.85 - -0.86 - - -7.26 2.37 0.47 1.73 -0.2 -3.72 0.71 -0.05 0.84 0.31 0.66 0.05 -0.3 1.84 -0.99 2.62 -1.1 -0.72 -5.05 -3.99 -3.52 -5.3 -4.44 -3.7
- - - - - - - - -5.13 - 2.04 -1.41 2.61 -0.68 1.69 1.53 -0.24 1.96 1.14 0.72 0.19 -3.98 -1.87 -3.14 2.33 -3.5 -4.99 -5.14 - -4.25 -5.42 -3.92 -2.84
- -7.36 - - - - - -6.17 -7.24 - 1.69 0.7 2.99 -0.73 1.6 1.17 0.41 1.35 0.88 0.34 0.43 -2.86 -1.12 -3.98 2.12 -1.55 -2.32 -3.6 -4.42 -5.31 -4.67 -4.75 -2.21
-4.72 -4.8 -4.98 - -7.58 - - -6.18 - -4.27 1.6 0.6 2.28 -4.33 2.53 1.61 0.51 0.9 0.88 0.26 0.67 -0.2 -3.38 -5.58 2.47 -4.68 -3.95 - - -6.33 - - -
-2.7 -3.24 -3.69 -3.57 -4.75 -7.74 -1.96 -3.74 -4.76 -5.88 2.82 -2.3 1.56 -3.58 -0.91 2.01 -0.85 1.42 1.37 0.69 0.82 -2.06 -3.7 -5.03 2.38 -3.19 -1.92 -1.53 -0.77 -1.99 -2.07 -2.1 -1.05
- - - - -9.27 - -8.11 -4.74 - - 2.28 -5.06 1.59 -4.47 -0.06 2.37 1.26 1.55 1.88 1.34 1.63 -5.57 - - 1.96 -3.24 -2.23 - - - - - -
-1.89 -1.75 -3.88 -4.18 -4.95 -4.89 -0.01 -3.56 -3.43 -3.07 1.62 -3.47 2.18 -7.04 0.39 1.42 1.74 1.24 1.45 1.46 1.22 -2.99 -0.07 -3.39 1.74 -1.52 -0.74 -3.35 -4.74 -5.29 -4.51 -4.63 -4.43
- -0.84 -5.03 - -4.74 - - -1.03 -4.5 -2.53 2.77 -0.18 1.76 -1.5 -1.91 0.58 0.6 1.53 1.86 0.58 0.34 0.88 - - 2.49 -4.45 -2.8 - - - - - -
-5.23 -4.93 -3.51 -4.82 -5.7 - -4.85 -5.04 - - 2.71 -2.3 1.61 -0.43 -3.18 1.84 1.23 1.72 1.05 1.52 1.03 -3.25 -2.2 -6.17 2.32 -2.99 -1.52 -7.24 -7.04 -5.14 -7.01 - -5.82
-2.28 - - - -3.29 - - - - -1.9 3.18 - 1.29 - 0.12 2.37 -0.5 1.33 1.79 1.07 1.5 - - - 1.6 - -6.16 - - - - - -
-5.73 - - - -5.15 -3.37 -1.78 -5.79 -6.43 - 2.64 -0.44 0.13 -1.16 -3.02 1.41 0.04 2.26 1.51 0.74 2.01 -3.51 - -2.95 0.2 -2.46 -2.0 -0.57 0.12 0.24 -0.6 -0.49 -0.37
- - - - -11.07 -7.9 -5.97 -6.77 - -7.16 2.69 1.11 1.8 -1.04 0.91 1.17 1.18 1.2 0.99 -0.06 1.0 -0.13 -1.2 -0.86 2.02 -2.36 -1.42 -5.95 -6.71 -5.67 -4.36 -3.17 -5.29
-7.03 -8.44 -7.79 -10.35 - - -4.8 -6.9 -8.97 -8.6 2.53 -2.96 1.13 -3.66 -0.29 2.12 -0.58 1.8 1.61 0.78 1.43 -3.15 -3.05 -7.82 1.45 -1.72 -0.67 -0.68 0.07 -0.75 -1.36 -1.7 0.15
- -4.81 - - - -6.11 - - - - 1.97 -5.51 1.41 - 1.14 1.65 0.98 1.8 2.12 2.1 1.72 - - -2.33 1.51 -1.91 -1.57 - - - - - -
-9.55 - - - - - -4.02 - - - 1.93 -0.37 3.0 -0.88 -5.67 1.26 0.73 0.79 1.28 1.39 1.02 -1.91 -3.61 -3.21 2.66 -4.11 -3.67 -7.81 -9.68 -8.88 - -7.97 -6.78
- - - - -9.7 - -3.15 -5.92 - -5.5 2.3 1.67 0.55 0.7 -1.28 1.39 2.01 1.69 1.44 0.47 0.94 -4.52 -1.93 - 1.82 -0.87 -0.03 - - - - - -
- - -7.94 - -6.71 - - - - - 2.5 -4.51 1.73 - - -0.68 0.4 1.96 1.76 0.68 2.13 - - -5.87 2.32 -0.64 -0.33 -1.5 -1.91 -1.88 -1.64 -1.26 -0.6
-0.15 -0.54 -1.52 -0.7 -0.56 0.13 -1.91 -1.28 -1.35 -0.84 0.44 0.27 2.91 0.87 -2.55 -0.87 -0.28 -0.88 -1.15 -1.49 -1.13 1.71 -4.14 1.36 2.52 -4.1 -3.51 -5.65 -9.55 - -6.82 -7.87 -8.62
-1.22 -5.24 - -3.1 -4.53 -1.13 -2.79 - - - 2.39 -1.0 0.85 -0.99 0.86 2.3 -1.86 1.76 2.3 -0.83 1.48 - - - 1.89 -2.26 -2.55 -2.36 -3.24 -4.44 -2.35 -1.98 -2.26
-0.16 -0.56 -1.13 -0.48 -0.26 0.26 -0.65 -0.75 -1.0 -0.02 -0.07 1.12 2.65 1.7 -3.36 -1.18 -0.12 -1.51 -1.4 -1.53 -1.46 1.09 -2.84 0.67 2.32 -1.44 -0.94 -2.63 -9.51 -8.47 -4.57 -5.06 -6.12
-7.44 -5.96 -4.09 -1.99 -6.44 - -5.75 -5.75 -4.7 -3.83 2.64 -0.99 0.63 -0.86 -0.83 1.37 0.45 1.65 1.96 1.75 1.67 -1.51 - -1.32 2.15 -4.41 -2.26 -6.78 -4.66 -5.29 - -4.64 -7.23
-6.25 -7.03 -4.01 -3.44 -4.37 - -7.74 -2.9 -2.84 -3.38 2.48 -1.56 0.71 -1.15 -1.14 1.01 0.63 1.85 1.75 1.44 1.32 -1.53 - -1.03 1.8 -4.25 -2.39 -0.85 -0.32 -0.74 -0.76 -0.82 -0.85
-4.07 -3.92 -6.32 -5.92 -6.22 -6.18 -3.6 -5.33 -6.8 -5.16 2.08 -0.47 2.15 -2.28 -4.7 1.56 -1.51 1.33 2.22 1.32 1.87 -1.4 -4.34 -1.86 2.39 -2.88 -2.02 -6.58 -8.67 -5.93 -5.32 -6.42 -6.97
-1.81 -1.76 -4.86 -4.09 -4.52 -5.58 -3.25 -2.81 -3.88 -1.88 2.04 -0.39 2.46 -2.12 -1.85 1.72 -1.85 1.48 2.2 0.59 1.76 -1.81 -5.31 -0.76 1.82 -1.77 -2.08 -8.93 - - - - -
-4.77 -5.62 -4.68 -6.18 -7.42 - -3.31 -7.06 -8.22 - 2.43 -1.27 2.54 -3.08 -4.12 0.79 -1.71 2.08 1.92 0.3 1.72 -2.27 -5.33 -1.25 2.46 -3.55 -2.69 - - -8.34 - -7.19 -
-4.01 -3.38 -4.26 -4.39 -3.04 -2.75 0.48 -5.36 -5.38 -5.33 2.1 0.94 1.19 -0.33 -1.78 0.89 1.46 0.88 1.25 0.82 0.53 -0.81 1.09 -5.74 2.02 -0.46 -0.31 -5.27 -3.66 -2.75 - -4.48 -0.37
-3.04 -4.49 -1.05 -0.68 -0.03 -1.68 -0.72 -6.59 -9.0 -8.51 1.4 1.11 1.1 -0.25 -1.2 1.05 1.35 1.31 1.09 0.51 1.19 -0.32 0.87 -2.52 1.89 -2.89 -1.77 -2.83 -2.73 -1.05 -3.29 -3.42 -0.37
-6.72 -7.41 - - - - -3.82 - - - 2.33 -0.89 2.49 -1.11 - 1.31 0.66 1.39 1.58 1.3 0.91 -1.72 -7.36 -3.4 2.73 -3.55 -3.45 - - - - - -
- - - - - - -5.02 - - - 2.02 -0.64 2.81 -1.07 -4.98 1.48 0.75 1.44 1.4 1.33 1.08 -2.99 - - 2.58 -4.01 -3.37 - - - - - -7.03
- -10.56 - -8.1 -7.93 - -8.47 -7.34 - - 1.64 -1.59 1.18 -3.53 0.06 0.69 1.61 1.07 1.31 0.78 1.12 -0.7 -1.24 -6.55 2.34 -0.73 0.04 -1.97 -0.55 1.11 -0.54 0.09 -1.2
- - - - - -7.3 - -8.0 -8.16 - 2.46 -6.16 1.25 -5.34 0.69 1.47 1.55 2.02 1.81 1.81 2.03 -8.09 -4.47 - 0.98 -2.08 -1.76 -6.52 - -9.15 -8.37 -8.25 -9.06
- - - -3.78 - - - - - - 1.25 - 2.36 - -1.17 2.27 0.96 1.71 1.61 1.74 1.23 -0.45 0.93 -4.01 1.68 -3.62 -2.43 - - - - -4.91 -4.74
- - - - - - - -5.28 - - 1.23 - 0.77 - -0.03 0.23 0.65 -0.35 0.29 0.18 0.66 -3.9 -1.62 -3.62 1.41 0.27 0.09 1.23 0.95 0.98 1.42 1.93 1.21
- -4.72 - - -5.23 - 0.62 - - - 1.62 0.57 1.45 0.03 - 0.89 1.11 -0.37 1.18 1.03 1.14 -1.16 2.29 - 1.84 -1.08 -1.02 - -2.05 -3.53 - -3.47 0.6
- - - - - - - - - - 3.45 - -0.68 - - 1.45 -0.28 1.32 1.51 1.79 0.82 - - - 2.7 -1.22 -1.35 - - - - - -
- - - - - -3.21 - - - - 3.1 - 2.0 - -1.05 1.95 -0.64 1.55 0.83 0.66 1.97 - - - 2.12 -1.14 -1.68 - - - - - -
- - - - - - - - - -4.1 3.36 -3.67 0.95 - -1.2 1.64 -0.13 1.95 1.46 0.24 0.73 - - - 2.67 -4.07 -1.69 - - - - - -
- -12.01 - - - - -9.53 - - - 1.7 -2.84 1.82 -1.06 0.66 2.37 0.84 1.31 1.69 1.72 1.31 -2.44 1.28 -1.16 1.17 -3.41 -2.51 - - - - - -
-0.83 -2.4 - - - - - - - - 2.56 -0.53 2.03 0.22 - 0.98 -0.1 0.78 -2.13 0.61 -1.17 -1.51 2.02 -1.36 2.74 -2.86 -3.15 -2.03 - -1.17 -1.61 -2.08 -0.72
- -3.75 - - - - -4.75 - -4.3 - 1.7 -2.3 1.92 - 0.4 1.46 -0.3 1.33 2.02 1.48 1.72 -1.79 -4.83 - 2.67 -9.61 -4.8 -1.95 -2.83 -1.79 -2.25 -2.16 -2.05
-3.14 -0.42 - - - -2.99 -2.52 - - - 1.93 -0.09 2.11 -0.32 -3.78 0.22 0.17 0.68 0.36 0.45 -0.14 -0.67 2.6 -2.45 2.85 -2.91 -2.53 -4.86 - - - - -
- - - - - -4.73 - - - - 1.59 -1.72 1.29 - 0.13 1.67 0.35 0.95 2.01 0.03 1.34 -0.64 -1.83 -4.77 2.02 -2.07 -0.61 0.39 -0.07 -0.43 0.28 0.09 -0.06
- - - - - - - - - - 1.66 - 3.06 - 3.74 - 0.88 - - - 0.17 - 0.11 - 2.01 - -3.23 - - - - - -
- - - - -2.87 - - - - - 2.78 - 1.8 - - 2.42 -0.01 - 1.97 - -0.72 - -0.78 0.31 3.08 -0.89 -0.91 - - - - - -1.65
- - -6.15 -5.37 - - -1.72 - - - 2.74 -1.73 2.39 - - 2.17 -0.11 1.3 1.39 0.23 -0.17 -1.64 -3.71 -4.84 2.84 -4.66 -2.73 -5.78 -6.6 -6.58 -6.45 - -5.52
-3.14 -3.02 -6.89 -6.67 -7.67 -8.04 -2.25 - -7.4 - 2.05 0.49 2.42 -0.19 -4.88 1.01 0.54 1.34 0.79 1.02 0.44 -0.26 -1.11 -2.55 2.98 -3.58 -2.77 - - - -7.97 -8.04 -7.22
-8.14 -9.23 - - - - -5.16 -6.7 -9.44 - 2.02 -0.64 2.84 -1.37 -4.97 1.78 0.59 0.62 1.55 1.43 1.27 -2.55 - -7.1 2.55 -3.83 -3.55 - -9.45 - -9.65 - -8.41
- - - - - - -8.26 - - -7.64 1.69 -2.89 0.95 -2.5 0.47 1.94 1.89 1.89 1.5 1.65 1.6 0.21 -1.52 -3.13 1.84 -2.01 -1.38 - - - - -8.24 -
- - - - - - - -6.49 - - 1.17 - 2.18 - 1.14 1.69 1.8 0.39 1.97 2.17 1.77 - -2.89 -2.57 1.83 -2.76 -2.75 - - - - - -
-6.15 -2.14 -7.84 -8.06 - - -4.5 -5.13 -7.2 - 2.14 -6.28 1.7 - -1.41 2.1 1.31 1.91 2.16 0.61 1.31 -4.09 -2.0 -3.72 1.95 -0.96 -0.38 -5.29 -4.54 - -5.07 - -
- - - - - - - -1.89 -3.22 - 2.02 -3.55 -0.31 - 0.6 1.12 0.52 1.47 0.46 -0.83 0.42 -1.5 0.36 - 1.73 -1.96 -2.62 1.32 0.49 0.45 0.76 1.26 0.83
-4.79 -2.89 - -5.83 -5.43 -1.7 -6.39 -0.4 -0.44 0.68 1.62 -3.34 -1.98 -4.91 -2.05 -1.48 1.49 -0.29 0.99 0.14 0.76 -4.26 -2.71 - 1.79 0.01 -0.68 0.29 -0.49 -1.17 1.38 2.01 1.39
- - - - - - - - - - 2.91 -2.99 1.9 - -0.98 2.4 0.81 1.62 1.24 0.92 1.13 - -3.1 - 2.01 -3.13 -1.8 - - - - -4.14 -
-6.95 - - - -8.19 -5.61 - - - - 1.68 -5.88 2.2 - 1.48 1.23 1.32 1.37 2.12 1.86 1.79 - - -3.9 1.39 -2.55 -0.67 - - - - - -
- - - - - - - - - -6.58 -0.64 -4.23 1.3 - -4.96 -5.31 1.47 -1.2 -4.99 -2.18 -5.02 -5.58 -0.97 -1.8 0.8 0.75 1.13 1.18 1.4 2.04 1.66 1.66 2.17
- - - - - - - - - - 1.85 - 1.23 -4.64 1.73 1.24 1.04 2.29 2.32 2.04 1.41 - - -2.62 1.26 -5.54 -3.93 - - - - - -
- - -6.75 -8.27 -8.79 - -2.62 - -7.89 -8.58 2.53 1.29 1.36 1.22 1.56 0.4 -0.5 1.36 1.4 0.9 1.09 0.42 -6.6 -1.28 1.63 -2.12 -2.45 -6.15 -3.79 -3.78 -4.6 -5.83 -3.9
- - - - - - - - - - 2.75 - 1.14 - -0.23 1.97 1.44 1.92 1.33 1.73 1.26 -6.85 -3.56 - 1.94 -2.22 -1.23 -6.84 - - - - -
-6.53 -8.17 -6.57 -7.73 -8.75 -8.91 -4.68 -9.04 - - 2.03 -2.27 1.41 -2.09 1.36 -0.62 1.12 2.39 1.71 2.16 1.55 -3.16 -0.97 -4.6 0.95 -0.66 -0.45 -3.67 -3.64 -3.79 -3.91 -4.38 -3.03
- - - - - - - - - - 2.48 - 2.19 - 0.27 1.3 0.47 2.52 1.46 1.5 0.21 -3.25 - - 2.12 -1.82 -0.62 - - - - - -
-4.78 - -2.16 -3.34 -3.56 - -0.45 -3.92 -5.47 -4.5 2.17 0.39 2.46 0.39 0.46 1.6 -0.53 0.59 0.68 -1.07 -0.09 1.54 -1.49 -2.32 2.16 -2.12 -2.34 -1.71 -3.5 -2.29 -2.83 -2.05 -3.43
- - - - - - -7.37 - -7.35 - 1.7 -5.22 1.87 - 0.99 1.74 1.24 1.88 1.85 1.65 1.59 - -6.47 -2.45 2.0 -1.6 -1.3 - - - - - -
- - - - - - - - - - 1.63 - 1.87 - 1.62 1.55 0.71 1.47 1.94 2.11 1.71 - - - 2.02 -3.37 -1.79 - - - - - -
-3.64 -5.38 -5.07 -5.62 -6.8 -7.59 -3.25 -8.28 -7.25 - 2.28 -0.63 2.51 -2.07 -4.11 1.19 -1.82 1.89 2.07 0.44 1.82 -1.59 -7.55 -1.13 2.2 -3.67 -1.3 - - - - - -
- - - - - - - - - - 1.79 - 2.17 - -0.83 1.78 -0.42 1.83 0.72 1.39 2.49 - - - 2.6 -3.56 -0.48 - - - - - -
- - - - - - - - - - 2.47 -4.83 1.67 -3.9 -0.89 2.08 1.42 1.9 1.49 1.06 1.37 -4.47 -5.27 -6.08 2.34 -2.86 -2.1 - - - - - -
- - - - - - - - - -6.28 2.46 - 2.61 - -2.44 1.96 1.17 2.26 1.22 1.3 0.91 - -2.05 -6.5 1.57 -2.45 -2.44 - - - - - -
- - - -4.15 -3.88 - -4.83 -2.14 -1.72 -1.63 2.25 0.57 1.31 0.61 -1.12 0.91 -0.66 1.71 0.88 -0.05 1.21 1.08 1.01 -2.98 2.28 -0.63 -0.91 - - -4.79 -5.66 - -4.77

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.