Heatmap: Cluster_440 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-3.43 -0.82 -6.94 - -4.94 -3.65 0.72 -2.85 -3.94 -0.98 0.45 -0.02 -2.32 - -3.82 -1.45 1.08 -2.29 -3.04 -4.33 -2.08 -4.88 -3.94 -4.07 -3.46 2.44 2.55 -2.82 1.58 2.63 0.35 -1.71 0.77
- -5.14 - - - - -0.58 - - - -2.59 -0.6 -2.77 - - - -2.17 - - - - -0.26 -0.72 -0.55 1.47 2.87 2.08 -0.41 -1.35 1.66 -1.53 1.17 2.96
-1.66 -1.35 -3.11 -3.64 -4.19 -2.79 0.09 -3.56 -2.5 -4.63 -0.48 1.11 0.27 0.01 -0.27 -0.45 0.95 -1.13 -0.92 -1.72 -1.11 0.8 -0.12 -1.34 1.3 1.57 1.63 -1.92 0.65 1.52 -0.99 -0.41 1.4
-0.87 -0.25 -1.83 -2.13 -3.5 -2.7 0.36 -2.74 -2.6 -2.9 -1.31 1.14 -0.53 -0.26 -1.16 -2.6 1.27 -0.8 -2.8 -3.3 -2.47 0.82 -0.48 -3.02 0.97 1.67 1.86 0.52 0.22 0.82 0.67 0.81 0.93
-1.64 -1.08 -2.38 -2.58 -3.31 -1.14 -2.5 -3.62 -3.39 -2.07 - -1.8 -1.78 -0.98 - -4.88 1.23 -2.39 - - - -0.08 -1.1 -2.04 -0.95 2.19 2.36 1.64 0.9 1.05 1.0 1.76 1.46
-1.82 -2.42 -6.45 -2.88 -4.38 -1.44 -0.06 -2.27 -3.98 -2.31 -0.41 1.02 0.93 0.29 -0.56 -0.88 0.61 -2.22 -0.82 -0.12 -0.7 0.29 1.41 0.22 0.01 2.01 1.96 0.27 -0.01 -0.17 -0.11 -0.09 -0.62
0.4 -0.77 -3.04 -2.24 -2.38 -1.97 -0.23 -2.21 -2.09 -4.28 -3.23 -1.52 -0.19 -1.17 -2.65 -1.07 1.2 -1.44 -0.76 -1.61 -1.04 -0.67 -2.78 -1.42 -1.13 2.58 2.56 0.54 1.18 0.58 0.57 0.13 0.25
-0.22 -0.16 -1.68 -1.48 -1.51 -1.02 0.43 -0.92 1.24 -3.53 -4.38 0.63 0.11 0.26 -7.31 -5.53 -1.56 -5.66 -8.35 -7.19 -6.38 0.84 0.54 0.03 -1.04 1.97 1.63 -0.94 -0.44 0.98 0.01 -0.79 2.18
-1.14 -0.47 -1.59 -1.03 -1.53 -4.71 0.36 -2.57 -1.07 -3.43 -0.43 -0.12 -0.73 -0.25 -0.03 -0.95 0.27 -0.83 -0.53 -0.23 -0.67 0.07 1.15 -1.92 0.49 1.78 1.44 0.12 0.64 0.9 0.34 0.44 0.88
-2.32 -0.92 -3.41 -3.62 -6.2 -3.73 1.15 -2.69 -1.98 -0.89 -5.64 2.03 -3.78 -1.92 -6.16 - 0.66 - - -5.26 - 1.32 -2.04 -1.72 0.74 2.23 1.98 -0.54 0.3 1.36 -0.33 0.3 1.54
-7.36 -2.12 - -8.44 -4.8 - -2.87 - -8.06 - -2.95 1.0 -0.27 -1.07 -2.74 -3.57 0.63 -1.88 - - -3.91 1.93 -0.84 0.8 1.33 2.16 2.19 -0.7 0.23 0.57 -1.9 -0.96 2.42
-1.88 -0.56 -2.63 -2.98 -2.43 -2.04 -0.6 -1.3 -2.15 -2.68 -1.13 -0.55 -0.84 -1.94 -1.43 -1.91 0.92 -1.93 -1.0 -1.45 -1.3 -0.58 0.43 -0.63 -0.65 1.49 1.41 1.35 1.51 1.38 1.3 0.81 1.53
-3.94 -7.03 -6.79 -6.93 -7.09 - 0.26 -6.08 - - -2.05 1.17 -0.07 0.56 -1.14 -1.41 0.94 -1.83 -1.21 -1.62 -1.53 0.79 -1.26 -2.89 0.8 2.05 2.3 0.13 0.47 0.97 0.08 0.72 1.27
-3.92 -2.79 -4.54 -3.95 -4.91 -5.13 0.36 -4.78 -5.53 - -0.49 -0.99 -2.23 -1.63 -2.3 -1.59 1.68 -0.99 -0.95 -1.97 -1.12 -1.96 -2.63 -1.58 -1.31 2.15 2.06 0.76 1.27 1.54 0.7 1.39 1.6
-1.07 -0.97 -1.4 -0.9 -0.95 -0.35 -0.62 -0.92 -1.43 -0.09 0.49 0.09 -0.86 0.24 -2.68 -1.34 -0.25 -0.69 -0.95 -1.15 -0.19 0.22 -1.18 -0.9 0.67 2.11 2.02 -0.42 -0.83 -0.79 -0.67 -0.7 2.01
-4.04 -4.64 -5.51 -5.2 -5.48 -4.66 -0.81 -4.32 -2.85 -3.06 0.52 -0.96 -2.78 -0.13 0.57 0.6 0.85 -0.79 -1.94 -1.61 -1.74 -2.47 -4.12 -0.29 -4.4 2.76 1.95 0.08 -0.07 0.97 -0.61 0.05 2.38
- - -3.27 - -2.2 - - -0.78 -0.66 -3.36 - - 0.09 -1.74 -1.74 -0.51 2.59 -1.66 -1.77 -0.03 -1.8 0.18 -1.86 -0.67 -1.7 2.38 2.25 -0.26 0.78 1.0 0.22 0.73 0.48
-3.04 -2.3 -2.57 -1.31 -2.28 -1.08 -0.29 -3.52 -1.41 -1.51 -0.14 1.0 0.56 0.01 -1.31 -0.56 1.48 -0.27 -0.34 -0.06 -0.47 0.48 0.08 -1.43 1.33 1.67 1.88 -2.36 -0.13 0.83 -0.89 -1.27 0.24
-5.74 -7.04 -3.95 -5.31 -4.93 -2.02 -0.35 - -3.66 -3.97 -0.72 0.32 0.31 0.53 -1.1 -1.43 2.02 -0.83 -1.72 -0.5 -0.2 0.18 -0.26 -3.79 1.34 1.75 2.05 -1.28 0.85 1.23 -0.25 -0.63 0.76
-4.93 -7.94 -5.11 -5.21 -6.89 -5.32 -0.64 - - -6.57 -0.44 0.31 -0.21 -1.38 -0.89 -0.39 2.1 -1.31 -1.0 -0.38 -0.42 -0.11 -0.87 -2.93 0.89 2.13 2.23 -0.84 0.83 1.37 -0.46 -0.21 0.95
-4.41 -5.94 -5.46 -4.32 -4.82 -3.67 -0.5 -4.77 -8.38 - 0.09 0.8 -0.93 -0.27 -0.97 -0.5 1.56 -0.5 0.09 0.01 -0.39 0.18 1.3 -2.36 0.52 1.54 1.58 -1.35 0.69 1.61 -0.91 -0.33 1.4
-3.26 -1.59 -2.0 -3.78 -2.41 -3.17 -0.16 -3.87 -5.43 -0.22 -0.01 1.46 -1.3 -1.21 - -0.52 -0.34 -0.25 -0.47 -0.03 0.87 0.43 -1.56 1.08 0.92 2.13 2.04 -0.93 -0.92 -0.08 -1.38 -0.39 1.22
-0.4 -0.88 -1.22 -1.87 -1.41 -2.08 0.71 -1.31 -2.07 -2.12 -1.89 -0.33 -2.32 -0.78 -1.08 -1.49 0.99 -1.09 -1.39 -1.03 -1.49 -0.08 0.73 0.73 -1.55 1.33 1.6 0.55 1.11 1.14 0.89 0.49 1.19
-3.5 -4.7 -4.91 -3.65 -4.17 -3.45 0.36 -6.18 -6.32 -3.67 -0.1 0.65 -2.32 0.83 -0.28 0.48 0.18 0.56 0.75 1.1 0.9 0.84 -1.47 1.35 -1.58 1.55 1.26 -0.89 -0.17 0.14 -1.21 -1.65 1.37
-1.04 -1.2 -1.06 -1.6 -2.2 -1.32 0.04 -2.02 -2.38 -2.95 0.33 0.64 -0.73 -0.47 -0.18 -1.35 0.76 -3.31 -4.41 -1.2 -2.86 0.82 -1.39 - 0.98 1.75 1.73 -0.92 1.0 1.64 -0.78 -0.25 1.76
-1.0 -1.42 -0.88 -0.9 -1.35 -0.57 -2.98 -0.83 -0.2 0.04 - -1.96 - -4.12 - - 0.96 -3.05 -4.15 -4.22 - -2.55 - - -2.5 2.55 2.79 0.08 1.34 1.28 0.62 0.51 1.49
-2.67 -3.13 -1.21 -1.5 -1.11 -0.61 -0.69 -1.77 -1.14 -1.78 0.42 1.61 -0.18 0.93 -0.24 0.76 -0.08 -0.42 -0.14 -0.38 -0.26 1.45 0.26 -0.22 0.13 1.27 1.3 -1.04 0.27 0.27 -1.37 -1.51 -0.23
-3.28 -3.2 -3.5 -3.02 -1.98 -3.18 -2.04 -1.59 0.3 -1.23 1.21 1.07 -1.2 1.16 -2.65 0.52 0.68 -1.18 -0.13 -1.45 -0.51 -1.03 -0.86 -1.79 -0.52 2.57 2.05 -2.12 -1.2 -0.78 -2.63 -1.93 1.82
-0.05 1.0 -0.22 -0.09 -0.19 -0.08 -0.75 -0.76 -1.55 -0.03 -0.93 -2.08 -2.13 -0.18 -2.07 -1.16 0.71 -1.8 -0.05 -0.8 -0.48 -2.47 -1.09 -1.13 -0.93 1.98 2.35 -0.84 0.64 0.26 -0.43 -0.85 0.9
-2.37 -3.79 -3.93 -2.74 -2.07 -1.77 -1.82 -1.37 -1.13 0.22 -1.23 -0.17 -1.96 -1.39 - -4.57 1.2 -1.6 -2.51 -1.77 -5.54 -4.99 -4.02 -2.27 -2.86 2.03 2.3 -0.39 2.24 2.45 1.34 -0.08 -0.45
-4.35 -3.5 - - - - - - - - - 0.52 -3.36 - - - -1.67 - - - - -0.72 -0.59 - -0.66 2.64 2.76 1.74 0.11 -1.43 1.08 3.17 -2.62
-3.68 -2.41 -4.26 -2.17 -3.09 -3.37 -2.82 -2.94 -0.59 -1.96 -2.74 -2.36 0.68 -5.63 -0.03 -3.84 -0.08 -3.14 -3.92 -4.72 -3.11 -1.68 0.63 1.41 0.93 2.01 1.54 1.75 0.67 1.29 0.47 0.37 1.73
-3.01 -4.46 - -3.49 -2.15 -2.79 -2.04 -0.87 - -1.02 0.32 -0.93 -2.62 0.08 1.87 -1.63 2.1 0.04 0.05 -2.75 1.44 - - -2.17 -0.88 2.34 1.75 0.83 -0.09 -0.22 -0.49 -1.23 -0.0
- - -6.89 - -6.08 - -2.88 - - - -1.69 - -3.51 - 1.65 -1.15 1.27 - -0.66 -0.34 0.36 - - - - 4.01 2.93 - - - - - -
-3.9 -6.34 -3.28 -4.04 -4.52 -4.73 -2.81 -5.51 -5.05 -5.43 -1.72 -0.34 -0.03 -1.08 -3.63 -2.29 0.65 -1.62 -2.67 -1.37 -3.16 0.77 -1.56 -0.57 1.23 2.24 2.32 1.24 -0.32 0.78 1.39 1.73 0.55
-2.9 -3.06 -2.37 -2.9 -2.9 -3.25 0.19 -6.16 -4.05 -4.23 -0.26 0.96 0.28 -0.55 0.62 0.35 0.34 -1.42 0.1 -1.54 -0.36 0.44 -0.35 -1.41 1.15 1.6 1.55 -2.11 0.69 1.61 -0.8 -0.31 1.39
- -6.21 - - - - -1.12 -7.57 - - 0.25 -0.45 0.12 -1.57 -2.33 -0.29 1.99 0.15 -1.16 -0.62 -0.96 0.36 1.16 -3.1 0.61 1.61 1.73 -2.06 0.45 1.86 -0.19 -0.17 1.55
-3.22 -3.68 -3.26 -2.75 -3.39 -2.86 0.21 -4.53 -5.87 -1.84 0.16 0.53 -3.05 0.5 0.11 0.35 0.28 0.25 0.91 0.84 0.92 0.66 -1.5 0.49 -1.68 1.44 1.17 -0.38 0.28 0.65 -0.96 -1.15 1.72
-4.64 - - - - - -0.61 - - - -0.27 0.78 1.51 -1.04 -3.92 -1.01 1.76 -1.78 -0.61 -0.76 -0.99 0.46 1.0 -1.01 1.3 1.81 2.08 -2.25 0.51 0.96 -0.35 -1.99 0.79
-3.01 -1.63 -6.31 -4.65 -5.8 -7.38 -1.66 -5.2 -4.47 -3.63 0.6 1.26 0.96 -1.52 -0.99 0.64 -0.81 -0.77 -0.54 -0.78 -0.32 -0.3 0.28 -0.18 0.74 1.83 1.13 -0.4 0.67 1.14 -0.23 0.2 1.87
-3.94 -5.39 -6.15 -3.73 -5.22 -4.8 -1.37 - -6.0 - -1.65 -1.27 -0.45 -1.13 -4.58 -2.09 1.36 -2.19 -3.62 -1.36 -2.06 - - -2.25 - 2.23 2.57 -0.16 2.37 2.62 0.97 -0.08 -0.56
-4.01 -4.17 -3.78 -3.99 -4.44 -4.29 -3.48 -3.83 -3.53 -4.0 -0.47 1.51 0.18 -1.23 -0.62 -1.4 -0.02 -1.3 -1.0 -1.69 -1.49 1.34 -1.62 -0.74 0.92 1.74 1.63 1.65 -0.34 -0.25 1.05 1.99 0.07
-1.7 -0.71 -1.54 -1.91 -3.11 -2.29 -0.09 -4.74 -4.17 -2.57 -1.91 0.8 0.05 -1.24 -2.13 - 1.23 -2.06 -2.17 -2.92 -2.89 0.73 -0.72 -2.39 1.03 1.49 1.28 1.22 0.25 1.37 0.88 1.35 1.57
-2.43 -4.67 - -5.2 -5.26 - 0.61 - - - -2.12 0.46 -0.89 -0.32 - -5.11 1.5 - -4.06 -4.12 -2.77 -0.58 1.06 -1.69 -0.29 2.29 2.26 -0.23 1.26 1.39 -0.41 -0.11 2.02
-0.76 -0.68 -2.78 -2.16 -1.65 -1.43 -3.45 -1.82 -1.95 -1.86 -1.04 0.97 0.04 -2.02 -1.34 -1.02 -0.66 -2.3 -2.34 -2.28 -2.42 1.52 0.52 0.99 0.77 1.42 1.43 1.71 -0.72 -1.2 0.54 1.84 0.07
- - - - - - - - - - 0.16 -2.16 1.86 -2.74 -0.32 1.24 0.17 0.63 0.87 0.31 0.14 -0.02 -0.09 -0.58 1.25 1.92 2.19 0.18 -4.0 - -0.48 1.4 -
- - - -8.51 -7.29 - -4.93 -7.01 -5.7 -2.94 -0.08 -3.08 -3.02 -3.72 0.69 -0.05 1.4 0.74 0.23 0.12 0.56 - -5.52 -3.17 -1.49 2.21 2.39 0.07 -0.0 1.29 0.27 0.59 1.75
- - - -4.75 - - -4.77 - - - -4.86 -0.59 2.31 -0.94 - 0.48 -1.49 -0.51 -3.78 -0.52 -0.01 -1.2 1.21 - 2.76 1.76 2.0 0.15 - - 0.44 1.66 -
-3.16 -2.78 -5.12 -4.73 -4.6 -6.28 -1.36 -6.48 -7.33 -9.31 -0.14 1.62 -1.25 1.51 -0.0 0.46 -0.34 -1.01 -0.92 -0.73 -0.73 -0.4 -2.17 -0.95 0.07 2.14 1.68 -0.04 0.85 0.66 -0.83 0.37 1.67
-5.07 -3.14 - -6.78 - - -0.67 - -4.4 - 0.35 1.34 0.09 0.14 0.68 -0.08 0.79 0.67 0.3 -0.63 -0.06 1.28 -1.11 -1.16 1.19 1.75 1.36 -0.69 -0.18 0.41 -0.64 -0.54 0.82
-2.84 -2.25 -4.3 -4.53 -4.11 -2.22 -2.32 -4.94 -5.37 -3.18 0.25 1.65 -1.11 0.54 0.64 0.38 0.85 0.11 0.18 0.4 0.34 1.19 0.09 -1.12 0.81 1.16 1.22 -0.86 0.18 0.86 -0.49 -0.13 -0.04
-4.57 -2.85 -6.42 -5.83 -4.82 -6.72 -0.75 -1.1 0.51 1.72 -0.32 0.87 -2.33 1.64 -3.44 0.34 0.25 -1.93 -1.39 -2.61 -1.92 -1.23 -1.81 -2.83 -3.0 3.29 2.57 -4.3 -5.17 -5.13 -5.08 -4.36 -0.95
-3.24 -2.53 -3.09 -2.63 -2.94 -1.16 - -3.7 -3.84 -5.64 1.12 -0.55 0.33 0.39 -5.21 -0.03 0.39 -3.82 -0.36 -2.22 -1.63 -1.48 -0.66 -5.47 1.23 2.33 1.98 0.22 0.68 0.51 -0.26 0.47 1.94
- -4.9 -4.5 -5.39 -4.62 -2.82 -1.72 -2.21 -3.09 -2.22 -1.59 -0.05 -2.57 0.17 - -3.77 1.28 - -3.71 -2.78 - -3.78 - -3.94 -3.65 2.34 2.56 -0.17 2.12 2.62 1.22 0.28 -1.31
-0.61 -1.17 -1.03 -1.86 -0.79 -1.1 -0.01 -0.94 -1.14 -1.96 0.22 0.35 -0.19 0.29 0.65 0.29 -0.62 0.65 0.69 0.42 0.24 0.53 0.43 -0.66 -0.49 0.9 0.69 0.12 0.4 0.11 -0.13 -0.0 0.23
-1.41 -1.54 -2.53 -2.4 -3.25 -2.38 -0.04 -4.88 -4.62 -1.69 -0.09 0.86 0.07 -0.42 -0.38 -0.3 0.79 -0.74 0.36 -1.06 -0.5 0.78 0.68 -1.56 0.58 1.31 1.46 0.27 1.09 0.91 0.11 0.18 0.61
-5.38 -4.88 -7.47 -6.82 -7.31 -5.53 0.32 -8.21 -6.63 - -0.02 1.37 0.68 0.04 0.11 0.72 1.25 -1.17 -0.46 -1.13 -0.19 1.01 0.17 -1.31 1.44 1.38 1.56 -2.12 0.03 0.96 -1.22 -0.8 0.86
-0.63 -1.36 -1.06 -2.03 -1.61 -1.42 -0.36 -2.52 -2.65 -2.25 -0.17 -0.84 -0.86 -2.7 -0.35 0.02 0.86 -1.02 -0.99 -0.32 -0.73 -0.64 0.6 -1.03 -0.08 1.21 1.34 1.09 1.05 1.02 0.83 0.88 1.47
-5.7 -3.35 -5.08 -4.62 -5.64 -4.82 -2.49 -4.92 -5.01 -5.08 -0.92 1.06 -1.25 0.36 0.31 -0.97 0.83 -1.02 -1.03 -0.98 -1.42 0.26 -1.2 -2.62 0.58 2.12 2.17 -0.06 1.3 1.28 -0.15 -0.27 1.61
-2.31 -1.86 -3.5 -2.27 -3.21 -2.45 -1.04 -2.37 -1.51 -2.17 1.13 1.37 0.16 0.48 0.51 0.98 -0.35 0.11 -0.38 0.39 -0.47 1.15 -0.59 -1.22 0.55 1.27 1.13 -0.82 -0.02 0.27 -0.28 -0.33 0.66
-6.16 -6.38 - - -7.67 -5.62 -0.61 - - - 0.15 0.71 -1.2 0.13 -3.45 -0.69 1.85 -5.38 -3.49 -3.23 -3.2 0.16 0.8 -2.9 -0.89 2.4 2.18 -0.66 0.07 1.53 0.15 0.33 1.61
-5.78 - - - - - -2.97 -4.92 - - -1.37 -0.47 -1.49 -1.48 -1.33 -1.83 1.31 0.2 -0.95 -0.77 -0.59 -0.79 -2.07 -3.58 -0.49 1.82 1.72 1.13 1.58 1.66 1.17 1.26 1.82
-2.1 -5.36 -2.77 -3.34 -5.0 - -1.58 - - - 0.33 -0.12 0.61 -1.05 1.77 -0.34 -0.95 -0.85 -0.96 -0.81 -0.32 1.5 0.8 -1.64 1.98 1.31 1.4 -0.08 -0.3 0.63 -0.13 -0.24 0.84
-1.35 -1.78 -1.04 -0.45 -0.59 0.2 0.15 -1.44 -1.37 0.31 -0.21 0.13 -3.49 0.06 -0.44 -0.43 0.23 0.04 0.24 0.65 0.27 0.2 -1.82 -0.1 -2.32 1.49 1.24 -0.34 0.37 0.64 -1.03 -1.06 1.63

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.