Heatmap: Cluster_8 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - -2.22 - - - - - - - - - -0.89 - - - - - 1.51 -0.01 - -5.38 -2.62 2.55 1.93 2.17 1.67 2.06 2.74
-3.18 -2.66 -2.81 -1.36 -1.56 -1.16 1.0 -1.41 -0.93 -0.85 - -2.4 - -5.3 - - - - - - - -5.65 - - - -6.79 -8.4 0.59 2.6 2.92 2.09 1.39 2.51
- -7.8 - - - - -5.06 - - - - - - - - - -10.57 - - - - - - - - 0.39 0.22 1.47 2.8 2.73 1.46 1.21 3.18
- -4.94 -5.78 - - - -7.2 -5.99 -6.1 -4.25 - - - -2.55 - - -5.81 - - - - -4.24 -5.26 -4.07 - -5.08 -6.06 1.66 2.66 3.06 2.27 1.94 2.58
-3.3 -1.73 -5.41 -8.88 - - -1.54 - - - - 0.07 -0.17 -1.73 -2.84 - -2.72 -4.21 -5.54 - -3.69 -0.55 -0.21 -2.7 -0.52 -0.15 -0.66 1.43 2.5 2.14 1.31 0.68 3.14
-2.86 -3.77 -1.96 -2.23 -1.9 -1.58 -2.02 -2.58 -1.62 -2.16 0.12 -0.62 -1.98 -1.72 0.1 -1.51 -3.0 -2.77 0.5 -0.39 -0.28 -0.56 -2.38 -1.59 -1.07 -2.21 -1.93 1.78 1.71 1.81 1.84 1.59 2.26
- - - - - - - - - - - -5.98 -6.63 - -7.55 -6.65 -5.26 - - - - -7.49 -6.68 -7.81 -5.93 -5.37 -4.64 0.33 2.89 3.26 1.08 0.71 3.44
-5.64 -8.16 - - - - - - - - -4.87 0.53 -1.33 - -1.03 - -3.79 - - - - 0.74 -5.61 0.28 0.3 -0.2 -0.18 0.64 2.11 2.55 0.78 0.48 3.3
-6.14 - - - - - -0.71 - - - - -1.49 -1.62 - - - -2.41 - - - - -5.08 -2.73 - -1.13 -2.78 -3.93 1.85 2.15 2.87 1.96 1.1 3.21
- - - - - - - - - - - - - - - - - - - - - - - - - - - 2.14 2.01 2.88 2.2 2.64 2.68
-5.33 -6.75 -5.98 -7.24 - -5.66 -6.47 -4.99 -4.75 -3.2 - - -2.13 -5.45 - - -1.72 - -5.48 - - -1.73 -0.99 -4.7 -1.71 -4.01 -1.97 1.75 2.75 2.62 1.48 1.84 3.01
-3.15 -2.88 -5.77 -6.95 - - 1.5 - -5.65 -4.87 - 0.61 -5.3 -0.85 - - -5.58 - - - - 0.73 -0.41 - -1.4 -2.45 -1.78 1.77 2.05 1.92 1.76 1.79 2.65
- - - - - - - - - - - - - - - - -2.14 - - - - - - - - -1.43 -1.42 0.89 3.04 3.28 1.33 1.58 2.74
-2.28 -1.62 -5.64 -6.23 -7.89 - 1.94 -3.71 -4.85 - - 0.5 -4.18 1.23 - - -4.66 - - - - 0.6 -0.36 -5.7 -2.6 -2.94 -2.13 1.89 1.55 2.03 1.66 1.38 2.41
-5.59 -4.94 - -6.62 - -6.02 -5.92 -4.25 -6.81 -4.73 -4.12 -3.57 -2.64 - 0.75 -0.72 -2.88 -3.81 -2.45 -2.39 -2.62 -2.21 -6.0 -3.81 -3.52 -2.56 -2.7 2.46 2.28 2.14 2.48 2.16 1.99
-4.19 -3.83 -4.08 -5.76 -4.69 -3.28 -2.58 -5.58 -5.73 -3.55 -3.83 -0.33 -3.22 -0.6 -2.22 -2.65 -4.05 -3.73 -7.84 -7.9 -7.87 -3.95 - -3.74 -3.31 -0.43 -0.89 1.96 2.39 2.69 2.02 2.15 2.19
- - - - - -2.66 - -4.35 - - - - - - - - -1.11 - - - - - -3.62 -2.75 - - -4.25 1.94 2.43 2.96 2.37 1.9 2.62
- - - - - - - - - - - - - - - - -2.62 - - - - - -4.51 - - -3.87 -1.89 1.66 3.03 2.97 1.15 1.52 3.04
-6.75 - - - -7.33 - - -5.87 -6.02 - - - - - - - - - - - - - - - - - - 2.43 2.61 2.22 2.96 2.33 2.0
- - - - - - - -1.87 -0.02 - -2.12 - - -1.01 - - -2.41 - -1.04 - - -1.03 -1.14 -0.27 - -4.27 -1.8 2.7 1.8 1.1 2.32 2.14 2.74
-2.4 -3.32 -4.93 -3.44 -2.91 -1.18 - -4.13 -4.73 -4.24 -3.84 -3.81 -2.86 - - - -2.67 -3.73 -2.84 - - -3.74 -2.93 -1.74 -1.18 -1.69 -1.68 2.78 1.84 2.0 2.22 2.38 2.42
- -7.02 -6.75 - -4.57 - -4.41 -3.2 -4.76 - - -4.36 -3.41 - - -5.44 -2.89 -1.95 -5.38 - -3.41 -3.62 - - - -2.15 -2.84 2.35 2.25 2.5 2.11 2.15 2.88
- - - - - - - - - - - - - - - - - -1.61 -2.72 - - - - -2.94 - - - 2.93 2.12 1.7 2.31 2.7 2.51
- - - - - - - - -3.46 -2.96 - - - - - - -6.91 - - - - - - - - -0.03 -0.78 2.48 2.24 2.4 1.97 2.42 2.66
-0.87 -1.33 -3.31 -3.14 -3.13 -3.49 -0.3 -4.2 -3.76 -2.39 -1.05 -0.45 -2.84 - -0.26 - -0.87 -2.28 -1.8 -1.13 -1.83 -1.55 -0.08 -2.61 - -1.35 -1.14 2.19 2.15 1.75 1.73 1.57 2.49
- - - - - - - - - - - - - - - - -3.11 - - - -2.16 - - - -2.06 -3.47 - 2.41 1.37 2.53 1.9 2.46 3.24
- -1.97 - - -4.03 -3.32 -5.16 - - - - - - - - -2.2 -3.91 - - - - -4.04 -4.23 - - -5.65 -4.41 2.34 2.39 2.48 2.13 1.71 3.1
-1.98 -1.68 -2.81 -2.15 -2.72 -1.36 -0.52 -3.29 -2.44 -1.66 -1.33 -0.83 -0.34 -0.85 -1.46 -1.17 -1.92 -1.18 -1.2 -1.59 -0.76 -0.36 0.25 -0.62 -1.35 -1.94 -1.34 1.6 2.28 2.21 1.53 1.22 1.87
-3.98 -2.94 -3.75 -5.99 -5.27 -5.14 -0.05 -1.69 -3.48 -4.73 -3.22 0.16 -1.91 -0.3 -2.42 -2.09 -2.54 -3.93 -4.03 -3.51 -4.07 -1.23 -1.67 -1.35 -0.97 -1.98 -1.58 1.82 1.99 2.3 1.73 1.71 2.77
-2.64 -2.38 -5.69 - -6.01 - -0.72 -2.56 -6.17 - -3.79 -0.05 -1.2 -0.67 -3.17 -4.85 -1.0 - -4.38 -2.98 -6.41 0.18 -0.47 0.06 -2.5 -0.89 -0.94 1.74 2.64 2.38 1.65 1.02 2.26
- -2.96 - -4.25 -2.45 - - -2.83 - - - - -2.58 - - - -4.74 - - - - -4.44 - -3.76 -3.47 -5.8 - 2.16 2.29 2.67 2.17 2.37 2.72
-1.09 -0.84 -2.57 -2.47 -2.39 -1.74 -0.77 -3.92 -3.58 -4.45 -2.71 -1.17 -2.56 -1.25 -1.08 -1.86 -4.35 -2.08 -2.31 -1.91 -2.2 -3.51 -3.12 -3.02 -2.03 -2.08 -1.63 1.92 2.22 2.42 2.26 1.85 2.05
- -0.84 - - -4.3 -2.21 - -2.33 - - - - - - - - -6.91 - - - - - - - - -4.69 -7.37 1.94 2.22 2.57 2.01 1.84 3.3
- - - - - - - - -2.42 - -1.06 - - - - - -1.78 - - -1.51 - - - - - - -1.66 3.03 2.01 2.45 2.03 2.42 2.11
-4.93 -4.12 -5.06 -3.63 -3.23 -3.49 -4.18 -1.54 -0.77 -0.61 -5.88 -3.99 -8.05 -5.32 -5.32 -6.47 -7.48 - -6.99 - - -4.77 -4.02 -5.57 -3.34 -1.91 -1.83 2.48 1.86 2.26 2.41 2.04 2.73
-5.06 -6.79 -5.51 -5.69 -7.23 - -5.04 -3.42 -4.18 -3.67 - -4.99 - - - - -7.21 - - - - -5.92 - -5.24 - - -5.96 2.19 2.21 2.63 2.01 2.03 3.18
-5.12 -3.68 -3.75 - -4.34 -2.45 -4.44 -1.8 -1.22 -3.32 -2.91 - - - - - -1.34 - - - -4.67 - - - -4.57 -0.82 -0.68 2.38 2.51 2.51 1.62 1.82 2.74
-2.16 -1.46 -4.27 -4.31 -5.39 -4.24 -2.64 -7.27 -7.83 - - -2.62 -1.07 -0.7 -1.78 -4.93 -0.22 -4.76 - - - -0.06 -2.22 -0.68 -2.8 -1.77 -1.2 1.38 2.44 2.83 1.54 1.46 2.61
-0.87 -1.33 -1.67 -2.4 -2.0 -2.09 -0.26 -2.25 -1.91 -1.82 -2.35 -0.99 -3.89 -2.79 -1.86 -1.4 -0.7 -2.97 -1.49 -1.02 -2.47 -1.7 -1.85 - -2.13 0.43 0.19 0.99 2.22 2.36 1.28 1.16 2.68
-4.15 - - -4.2 -3.59 - - - - - - - - - - -2.5 -2.36 - - - - - - - - -5.37 - 1.77 2.48 2.96 2.1 2.18 2.77
-2.87 -2.55 -2.71 -2.7 -2.79 -2.55 -1.24 -2.86 -3.08 -2.79 -1.23 -1.01 -1.25 -1.03 -1.23 -1.17 -1.67 -0.97 -1.5 -1.37 -1.03 -1.16 -0.27 -1.01 -1.68 -0.67 -0.59 1.67 2.2 2.19 1.78 1.54 2.15
-1.46 -1.23 -2.39 -2.09 -2.45 0.5 -0.22 -1.24 -0.48 -0.0 -2.7 -0.49 -4.59 -0.67 -0.81 -1.66 -3.25 -1.44 -2.54 -2.02 -2.99 -1.2 -2.9 -2.26 -2.6 -1.13 -1.39 0.04 2.69 2.18 -0.71 -1.03 3.15
-9.39 -9.21 - -8.05 -9.0 - -2.09 -9.57 -7.06 - 0.11 -2.02 -1.03 -1.04 -0.22 0.7 -1.23 0.13 -0.06 -0.34 -0.16 -0.81 -1.44 -1.37 -1.53 -1.11 -1.68 1.12 1.41 2.49 0.94 1.41 2.66
-7.87 -6.25 - - -8.4 - -0.95 - - -6.24 -3.83 2.02 -4.05 0.74 - -4.9 -4.43 -3.36 -7.17 -6.23 -4.03 0.74 -3.67 -5.39 -0.91 -0.21 -0.6 0.43 1.95 2.87 0.61 0.66 2.78
-3.62 -2.0 -4.13 -6.13 -3.26 -4.57 1.16 - -6.32 -4.69 -0.82 -0.64 -0.76 -0.1 - -1.48 -2.61 -0.99 -2.25 -2.31 -2.87 -0.8 -0.19 -3.32 -0.07 -1.16 -1.24 -0.67 2.56 3.02 -0.33 -0.95 2.7
- - - - - - - - - - -1.42 -1.91 -1.62 - 0.78 -1.54 -4.07 - -1.43 -3.66 -2.51 -0.56 - -4.82 -2.94 -2.1 -2.87 1.93 2.9 2.25 1.28 1.27 2.85
-6.82 -4.2 - - -5.98 -4.33 - -5.6 -5.17 -3.68 - - - - - - -7.13 - - - - - - - - -6.04 - 2.37 2.52 2.38 2.23 2.14 2.91
-3.56 -3.18 -4.75 -4.31 -7.89 -4.2 -6.67 - - - - -1.1 -0.88 -0.23 - - -0.52 - - - - 0.28 0.69 -3.57 -2.84 0.61 0.83 0.64 0.67 2.29 1.98 0.87 3.31
-3.82 -7.06 - -5.47 - - -1.78 -4.45 - - -4.04 -2.46 -0.51 -1.94 -2.94 - -1.83 - - -3.03 -1.74 -0.99 -1.8 0.24 -2.42 -0.16 0.18 1.64 2.19 2.67 1.86 1.67 2.45
-2.7 -2.38 -3.95 -3.77 -4.2 -3.32 -0.85 -3.91 -4.31 -3.64 -1.6 -0.23 -0.73 -0.83 -3.27 -1.01 -1.74 -1.45 -0.95 -1.42 -0.98 -0.42 -0.04 -1.02 -1.35 -1.54 -1.22 1.63 2.39 2.22 1.61 1.48 2.13
- - - - - - - - - - - -2.23 - - - - -0.76 - - - - -4.74 - - - -0.8 -0.43 0.3 2.67 3.36 0.9 0.66 3.26
- -5.07 - - - - - - - - - - - - -4.73 - -0.78 - - - - - -0.85 - - -0.26 -0.17 0.38 2.68 3.31 1.2 0.91 3.05
-1.56 -1.3 -2.36 -1.27 -1.7 -1.11 -1.58 -2.2 -1.66 -1.74 -0.96 -1.66 -1.26 -1.41 -2.23 -1.46 -0.55 -0.88 -0.29 -1.34 -0.57 -2.31 -0.42 -3.34 -0.42 -1.41 -1.23 2.01 2.14 1.92 1.93 1.47 1.58
- - - - - -4.8 - -1.55 -6.56 0.43 - -3.06 - - -0.76 -4.72 - - - - - -6.57 - - - -2.73 -3.45 1.12 3.12 2.3 2.74 1.13 2.49
-3.17 -1.85 -4.51 -3.74 -2.74 -4.31 -2.29 -3.18 -3.47 -4.39 -5.75 -4.17 -1.64 -1.02 -4.65 -2.25 -2.34 -2.73 -1.64 -3.74 -2.51 -1.99 -2.29 -1.8 -3.35 -1.19 -1.0 1.81 2.02 2.52 1.85 1.77 2.94
-2.8 -2.28 -2.08 -2.87 -1.62 -5.2 -0.09 -1.67 -2.11 -2.09 -0.94 -1.13 -1.34 -0.41 0.33 -1.72 -0.14 -0.78 -0.89 -1.8 -0.84 -0.41 -0.15 -1.37 -0.82 -1.57 -0.82 1.78 1.6 1.6 1.62 1.71 2.1
- - - - - - - - - - -0.1 -2.71 - - -1.11 - - - - - -1.18 - -1.24 - - -5.07 -3.22 1.63 2.58 2.71 1.95 2.3 2.6
- - - - -3.74 - - - - - - -1.54 - - - - -3.19 - -1.56 -1.62 - -1.47 - - - -1.04 -0.2 2.36 2.32 2.51 1.77 2.25 2.61
- -5.32 -6.68 -6.94 - - 0.08 -6.0 - - - -0.91 -1.36 -1.83 - - -0.58 - - - - -1.08 -2.27 -0.7 -2.11 -1.63 -2.09 2.0 3.01 2.36 1.44 0.32 2.76
- - - - - -6.24 -1.04 - - - -2.16 -1.78 -2.34 -1.86 -2.32 -1.26 -0.73 -1.95 -1.3 -5.12 -1.33 -2.51 -1.9 -2.11 -2.82 -0.77 -0.98 1.83 3.02 2.21 1.38 0.82 2.73
-3.61 -2.83 -4.24 -4.03 -3.33 -4.23 -0.05 -5.12 -4.54 -5.35 -1.25 -0.31 -2.11 -1.81 -0.81 -0.92 -0.54 -1.23 -1.04 -1.94 -0.85 -1.35 -1.62 -2.02 -2.11 -1.02 -0.89 1.65 2.73 2.1 1.33 0.8 2.49
-5.77 -5.46 -8.66 -9.58 - - -2.66 - -9.21 -5.39 -1.02 -0.16 -1.97 -2.28 0.24 1.24 -4.0 -0.86 -0.43 -0.48 -0.57 -0.47 -6.92 -3.15 -0.73 -2.88 -2.44 2.1 1.94 1.8 2.27 2.0 1.29
- -4.16 - - -7.24 - - - -4.91 - - 0.54 - - -1.4 -3.99 -2.5 - - - - -1.89 0.13 1.18 - -0.15 -0.67 0.88 2.39 2.58 0.73 -0.41 3.35
-4.82 -4.69 -7.0 - - - -3.8 - - - -2.19 -0.45 -1.21 -2.03 -1.06 0.28 -4.24 -2.07 -0.88 -2.09 -2.17 -0.4 - -2.44 -0.5 -6.23 -6.26 2.21 2.18 2.23 2.25 2.09 1.9
- -6.96 - - - - -6.68 - - -5.76 -0.61 -3.34 -2.83 - 0.87 0.01 -0.5 -2.77 -1.16 -0.5 -1.47 -4.59 -3.78 - -1.16 0.31 0.29 1.18 2.01 3.02 0.79 0.83 2.57
- -5.15 -4.49 -5.2 - -6.0 -4.87 -5.05 - - -0.62 -1.89 -2.63 -2.59 0.75 0.66 -1.27 -1.31 -0.0 -0.49 -0.46 -2.93 -5.96 - -1.95 -0.61 -0.77 1.13 1.89 2.97 0.94 0.95 2.54
-4.89 -2.82 - -6.18 -6.08 - -5.88 -5.67 - - 1.08 - -5.9 - -0.42 1.19 -0.77 - 0.71 0.27 0.26 -5.75 - - -2.56 -3.73 -3.79 0.89 1.9 2.88 0.81 1.59 2.31
-0.2 -0.57 -0.28 -0.29 -0.21 0.01 -0.34 -0.44 -0.7 -0.95 -0.88 -0.26 -0.76 -0.08 -0.86 -1.14 -0.73 -0.86 -0.96 -0.8 -0.73 -0.22 -0.27 -0.77 -0.67 -0.29 -0.24 1.06 1.29 1.3 1.22 1.14 1.27
-3.07 -4.26 -4.1 -3.67 -4.94 - -3.5 -2.79 -4.66 -4.07 -5.36 -4.26 - -4.25 -4.25 - -3.9 -4.18 -2.48 -4.35 - -3.05 -2.57 - -4.22 -4.03 -3.45 2.2 2.3 2.37 2.18 2.55 2.63
-1.64 -1.0 -1.94 -2.21 -1.98 -1.55 0.07 -1.72 -2.56 -3.61 -0.91 -0.38 -0.91 0.37 -1.72 -2.4 -1.21 -0.96 -1.07 -1.99 -1.37 0.08 -0.11 -0.47 -1.95 -1.18 -1.26 1.7 1.37 1.85 1.48 0.54 2.66
- -6.14 - - - - -2.21 - - - -5.44 -2.02 -3.07 -2.34 - -4.42 -2.87 -4.26 -4.37 -4.43 - -1.42 -1.14 - -1.98 -0.09 -0.36 1.78 2.2 2.87 1.93 1.84 2.66
-7.07 -6.17 -7.11 -6.89 -7.36 -6.41 -1.77 -7.13 -9.68 -5.31 -4.67 -1.43 -3.28 -0.95 -3.37 -5.2 -2.98 -4.51 -3.31 -3.79 -4.1 -1.32 -1.13 -3.07 -1.85 0.04 0.08 1.62 2.28 2.69 1.91 1.68 2.68
-5.24 -4.18 -4.97 -4.59 -4.79 -4.37 -1.53 -4.4 -4.81 -4.29 -2.87 -1.2 -2.69 -0.83 -3.57 -3.43 -2.67 -4.47 -3.29 -3.52 -3.55 -1.17 -1.11 -2.01 -1.75 -0.11 -0.15 1.57 2.19 2.67 1.92 1.66 2.64
-0.4 -0.34 -0.5 -0.39 -0.41 -0.13 -0.35 -0.4 -0.62 -0.35 -0.71 -0.43 -0.58 -0.27 -0.55 -0.48 -0.77 -0.57 -0.55 -0.65 -0.47 -0.18 -0.24 -0.51 -0.7 -0.48 -0.46 1.14 1.5 1.29 1.0 0.78 1.07
-0.85 -0.62 -1.48 -1.17 -0.84 -0.05 -0.96 -0.45 -0.02 -0.5 -1.62 -1.44 -2.21 -1.32 -0.71 -1.5 -2.03 -1.25 -1.31 -1.16 -0.91 -1.41 -0.77 -1.19 -2.72 -0.98 -1.05 1.4 1.93 2.16 1.54 1.14 1.87
-1.65 -1.14 -2.25 -2.28 -2.23 -1.06 -0.21 -2.83 -3.54 -2.05 -1.75 0.69 -0.1 -0.15 -1.16 -2.26 -1.63 -4.49 -3.51 -3.08 -3.17 0.65 0.55 -0.19 0.77 -0.66 -0.6 0.52 1.7 1.92 0.61 0.27 2.73
-5.95 -4.54 -4.87 -3.13 -5.07 -3.15 -0.03 -4.02 -3.93 -3.19 -2.27 0.32 -2.99 -0.48 -2.48 -3.15 0.5 - -2.81 -4.38 -3.94 -2.27 0.84 -4.8 -0.84 -1.28 -0.21 1.58 1.68 2.26 1.67 1.77 2.52
- -8.03 - - -8.66 - -6.51 - - - -2.53 -0.43 -1.55 -1.44 -0.22 -1.49 -1.79 -1.66 -2.61 -2.58 -2.64 0.72 -4.28 -3.04 -1.59 -0.04 0.13 1.67 2.17 2.63 1.65 1.61 2.25
-3.87 -5.06 -8.62 - -7.82 -7.26 -7.11 -5.16 - -4.68 -2.89 -0.25 -1.65 -1.15 -0.75 -2.24 -1.88 -2.66 -2.69 -2.98 -2.87 0.62 -2.72 -4.72 -0.99 -0.03 0.72 1.72 2.12 2.57 1.73 1.69 2.14
- -6.74 - - - - -6.85 - - - -6.89 -1.55 -4.27 -1.13 -1.62 -2.76 -1.96 -3.84 -5.82 -4.66 -5.85 -0.8 -5.18 -6.04 -1.82 -0.49 0.16 1.76 2.42 2.76 2.08 1.89 2.33
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-3.5 -6.84 -2.32 -2.04 -2.85 -3.04 -2.94 -4.4 -6.55 -5.43 -1.4 -0.66 -2.35 -3.41 -0.94 0.17 -3.55 -0.7 -1.06 -0.61 -0.92 -1.56 - -5.25 -1.55 -7.11 -4.84 2.39 1.87 1.93 2.15 2.27 1.98

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.