Heatmap: Cluster_110 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
1.76 1.93 -0.69 -1.84 -2.79 -3.58 0.93 -2.47 -1.26 -2.47 -0.88 2.54 -1.82 2.39 - -1.76 -3.07 -3.53 -2.97 -3.3 -2.18 2.42 -1.49 -1.81 0.99 -3.82 -2.25 -3.15 -2.9 -2.46 -3.99 -4.0 -1.53
0.65 1.81 -2.55 -2.4 -3.41 -3.43 1.13 -4.09 -3.91 -3.78 -2.52 0.62 0.65 1.66 -1.37 -1.08 -1.56 -2.06 -2.7 -2.98 -2.6 2.46 2.27 -2.79 0.48 -1.52 -0.56 -2.3 0.87 -0.11 -1.69 -2.55 -1.48
0.24 1.59 -1.26 -0.72 -1.04 -0.6 1.73 -0.88 -0.94 -0.1 -2.56 1.06 0.32 1.31 -1.83 -1.35 -0.76 -1.83 -2.2 -3.61 -2.4 1.77 2.45 0.96 -0.6 -0.98 -0.88 -3.2 -2.09 -2.95 -2.72 -4.63 -3.68
0.49 1.38 -2.17 -2.02 -2.26 -2.01 1.37 -0.88 -2.27 - -2.41 2.18 0.47 1.28 -1.14 -2.98 -1.17 -0.88 -3.42 -5.49 -3.72 2.06 -3.51 -0.33 1.88 -1.44 -0.65 -1.04 -0.16 -0.03 -1.52 -1.05 0.63
1.44 1.39 -0.59 -1.66 -2.56 -2.69 0.35 -2.69 -2.5 -3.82 1.0 1.7 -0.21 2.55 -4.56 0.74 -1.46 0.31 0.22 -0.22 -0.26 0.6 -2.56 -5.9 1.9 -1.02 -0.76 - -9.02 -9.99 - -11.71 -8.13
-0.14 -0.0 -1.32 -1.28 -2.44 0.19 1.13 -3.0 -1.53 -3.26 0.95 1.2 0.96 0.05 -1.41 0.26 -0.84 -0.43 -0.35 -0.41 0.96 0.97 0.76 0.8 1.7 -0.48 -0.14 -0.92 -1.53 -1.24 -1.45 -1.62 -1.39
0.85 1.55 -0.68 -0.61 -1.1 0.3 0.52 -0.75 -0.17 0.48 -0.99 1.72 -0.84 1.7 -1.08 -0.72 0.04 -0.48 -0.58 -0.35 -0.54 1.55 1.58 -2.75 0.44 -1.4 -0.84 - -6.63 -6.27 - - -7.96
-0.02 0.21 -0.47 0.16 -0.23 0.06 -0.83 0.52 -0.53 0.16 -2.21 2.47 -0.22 2.42 -0.2 -1.51 -0.36 - -4.62 -0.6 -0.33 2.16 -1.13 -2.52 0.78 -3.06 -0.63 - -3.03 -3.3 -5.81 -4.69 -
-0.16 0.37 -1.01 -1.41 -1.26 -1.07 0.1 -1.31 -2.0 -0.58 -0.01 -0.22 -0.34 1.6 0.86 0.48 -2.25 0.84 0.62 1.13 0.52 0.54 -0.01 0.55 -1.77 0.26 -0.16 -0.45 -0.23 -0.75 -0.51 -0.26 -0.74
1.27 1.57 0.55 -0.11 -0.86 -0.94 1.18 0.27 0.07 -0.56 -1.84 1.77 -1.34 2.2 -3.01 -2.07 -0.94 -1.69 -3.35 -3.05 -3.97 2.03 -0.69 -0.26 -0.16 -0.31 -0.34 -3.16 -3.68 -2.86 -3.84 -2.82 -2.06
1.3 2.15 -2.21 -3.26 -3.69 -3.8 1.29 -0.81 -3.17 -2.38 -3.74 2.74 -3.69 3.01 -3.63 -2.72 -3.89 -2.56 -3.66 -5.31 -5.28 1.92 -2.17 0.36 0.14 -2.05 -2.18 - - - -6.09 - -
-0.24 -0.04 -0.02 0.02 0.04 0.63 0.99 -1.62 -1.35 -1.46 0.52 0.63 0.69 0.24 0.15 -0.03 -0.21 0.63 0.35 0.08 0.56 0.74 -1.15 0.3 1.13 -1.38 -0.93 -1.49 -0.92 -0.7 -1.02 -1.14 -0.83
-1.79 1.2 -2.22 -1.62 -3.49 -7.63 1.67 -4.23 -7.24 -4.13 0.51 0.95 -3.21 2.59 -0.2 1.16 -2.21 1.06 0.67 1.29 0.72 1.38 -2.19 -2.55 -1.3 0.57 -0.0 -8.54 -6.22 -9.21 - - -7.16
1.79 1.8 0.97 0.09 0.39 1.25 0.79 0.03 -0.77 0.21 -3.96 1.31 -2.77 - 0.01 -3.08 -2.23 - - -4.67 - 2.4 -1.33 -0.51 -1.95 -0.72 -0.9 -0.63 -0.11 -0.81 -1.26 -2.33 -2.04
0.41 -0.14 -0.9 -1.06 -1.55 -3.99 0.94 -0.12 -1.67 -0.11 -0.15 -0.07 - 2.85 -0.99 1.0 -3.42 -1.73 0.51 0.36 0.85 0.85 -1.02 0.87 -1.76 -1.95 -2.49 0.16 0.03 -1.67 -0.6 -2.39 -0.68
0.49 1.8 -1.31 -1.46 -4.31 -3.51 1.83 - -2.23 - -4.4 2.3 0.07 2.1 -4.3 -4.39 -0.87 -2.64 - - -4.36 2.5 1.92 -0.16 -0.01 -1.72 -0.52 - - - - - -
0.04 0.11 -0.44 -0.48 -0.74 -0.81 0.52 0.42 -0.13 0.46 0.77 1.79 0.28 1.28 -0.42 0.54 -0.65 0.89 0.28 0.59 0.12 0.8 -1.41 -1.28 0.87 -1.11 -1.27 -6.79 -3.05 -2.35 -4.89 -3.79 -2.18
0.34 0.23 -0.16 -0.43 -0.14 0.07 0.49 0.37 -0.49 -0.33 0.72 0.94 0.79 0.94 -0.82 0.44 -0.41 0.26 0.25 0.01 0.12 0.91 -0.01 -0.01 0.68 -0.02 -0.11 -3.09 -2.79 -2.18 -2.84 -2.64 -2.19
0.63 0.91 -0.86 -1.24 -1.78 -1.23 1.31 -2.44 -2.43 -1.95 0.1 1.1 -1.18 2.01 0.22 0.91 -1.7 0.39 0.48 0.43 0.11 0.48 -0.64 -1.26 -0.58 -0.7 -0.74 -0.58 -0.33 -0.6 -0.39 -0.8 -0.27
0.41 -0.14 -0.04 -0.68 -2.21 -0.08 1.72 -1.34 -2.89 - - 2.59 0.26 3.1 - - -0.34 - - - - 2.7 - - 0.14 - - - - - - - -
2.47 3.04 1.13 0.71 -1.26 - -2.82 -1.58 -2.69 -1.58 - 1.04 - -1.76 - - - - - - - 3.54 - - - -4.08 -4.07 - - - - - -
-0.44 -0.35 -0.01 0.53 -0.32 0.48 0.92 -0.76 -1.14 0.36 -0.48 0.63 0.59 -1.21 1.37 0.27 -1.19 -1.27 -0.31 -0.2 -0.15 0.58 -3.06 1.56 1.13 -1.82 -0.58 -0.95 -0.61 -0.46 -1.24 -1.35 -0.36
1.67 2.12 0.72 0.08 -0.34 0.19 -0.89 -0.61 -0.37 -0.22 -1.0 1.72 -2.51 -0.55 -0.33 -1.68 -3.31 - -1.84 -2.6 -2.41 2.26 -2.63 -2.76 -0.15 0.2 -1.5 -0.81 -0.78 -2.16 0.18 0.18 -1.39
0.81 1.98 -2.57 -4.18 -5.86 - 1.14 - - - -2.6 1.33 2.55 1.34 -5.59 - -0.22 - -5.63 - - 3.23 - -1.42 -0.78 -1.06 -0.8 -4.01 -2.1 -1.15 -2.82 -3.38 -0.88
0.71 1.22 -1.02 -1.96 -1.79 -0.79 1.55 -2.19 -3.65 -0.44 -1.25 1.97 0.53 0.97 -1.02 -1.49 -0.25 -0.83 -1.51 -2.86 -1.55 2.0 1.47 -3.02 1.59 -0.28 0.45 -5.4 -2.26 -3.29 - -7.39 -2.47
1.07 0.42 -1.67 -0.98 -1.58 -0.81 1.24 -2.11 -1.26 0.81 -1.45 2.5 0.96 3.1 - - -1.6 - - - - 2.43 - - -0.31 - - - - - - - -
0.25 2.06 -1.44 -1.71 -1.66 0.57 2.22 -2.03 -3.56 -0.12 -1.41 2.38 1.19 0.77 -1.41 -1.15 -0.25 -0.8 -0.9 -1.64 -0.85 0.69 - -1.13 1.98 -6.37 -5.63 - - - - - -
0.23 0.05 -0.59 -0.84 -0.74 -0.77 0.89 -0.45 -0.45 0.04 0.64 1.05 -0.47 1.34 -0.55 1.16 -0.62 0.86 0.53 0.73 0.74 0.9 -0.51 -1.99 0.11 -0.57 -0.53 -1.99 -1.83 -1.97 -1.55 -1.91 -1.67
1.34 1.26 0.34 0.27 -1.51 -2.41 -0.0 0.75 -0.04 0.05 -3.16 2.54 -2.69 2.13 -4.15 -5.73 -1.81 -3.36 - -5.74 -4.35 2.44 -1.8 -3.77 0.45 -0.85 -0.35 -3.19 -1.58 -3.04 -6.17 -5.07 -1.66
-0.2 0.2 -1.1 -1.0 -1.51 -0.9 1.79 -1.54 -1.27 -0.85 0.45 0.86 -1.16 0.77 -0.97 0.92 -1.19 1.35 0.97 1.27 1.19 -1.85 -1.13 -2.13 -0.09 -0.04 -0.03 -0.57 -1.1 -1.49 -0.74 -0.97 -0.99
0.27 0.17 -0.33 -0.87 0.09 -0.88 0.58 0.09 -1.21 -0.64 0.81 0.67 0.95 -0.4 1.36 0.7 -1.24 0.7 1.49 0.43 -0.01 0.5 -1.84 0.47 0.16 -0.38 -0.07 -2.72 -2.4 -3.78 -2.35 -3.56 -5.08
1.52 1.76 0.49 -0.65 -1.02 -1.18 2.02 -1.53 -1.7 -2.12 -5.13 3.0 -2.14 2.43 -5.32 -4.49 -0.19 -4.47 -8.44 -4.37 -4.11 1.37 -4.28 -3.06 0.12 -4.87 -2.64 -8.16 - -9.53 -8.38 -8.33 -5.88
1.65 1.9 - - - - 2.94 -1.14 - - - 2.09 -1.31 2.68 - -0.31 -1.83 -1.15 -1.25 -0.32 - 0.65 - -0.48 -1.19 -1.84 -0.79 -1.54 -2.34 - - - -
0.21 0.96 -1.4 -0.76 -1.73 -1.0 1.58 -4.04 -3.39 - -1.12 2.2 1.56 2.15 -3.19 -2.28 -0.28 - - - -4.84 2.25 -1.81 -0.67 1.97 -1.65 -0.66 -5.22 -2.61 -2.9 -4.26 -3.97 -1.24
-0.51 1.92 -2.4 -2.7 -5.53 -5.49 1.88 -6.78 -6.94 -7.63 - 1.31 1.28 1.61 - -7.42 -1.45 - -6.04 - - 2.95 2.17 -2.56 0.76 -0.81 0.36 - -5.94 -3.21 -7.23 - -6.91
0.48 2.42 -1.86 -2.71 - - 1.81 - - - -3.03 1.93 2.0 2.26 - - -0.35 -0.99 - - - 2.51 - 1.38 - -5.31 - - - - - - -
0.56 1.93 -1.12 -0.29 -4.1 -5.95 1.6 -5.69 -4.92 -1.52 -3.8 0.82 0.99 1.94 - -5.88 1.1 - - -4.3 -4.27 3.19 0.66 -5.46 -1.0 -0.85 0.07 -7.87 -4.25 -5.82 -7.88 - -3.75
1.14 1.29 -0.25 -0.86 -0.71 -1.52 -0.97 -1.12 0.71 -1.18 -0.9 1.25 -0.47 1.64 -0.57 -2.88 -1.89 0.59 0.08 -1.64 0.17 1.71 -2.0 -1.91 0.61 0.22 -0.14 -0.52 -0.7 -1.28 -0.5 -0.45 -0.88
1.34 1.41 0.89 0.26 0.13 0.49 1.56 0.81 0.94 0.35 -4.26 1.44 -0.23 2.28 - - -0.5 - - - -4.22 2.12 - - -0.39 - - - - - - - -
0.18 1.62 -2.08 -0.94 -3.05 -2.61 2.45 -3.42 -4.04 -2.31 -2.73 2.05 -2.57 1.8 - - 0.31 -1.92 -1.61 -4.67 -3.64 2.95 -0.66 -1.51 -0.5 -0.18 -0.52 -3.11 -1.31 -3.0 -4.12 -3.83 -1.77
-0.63 0.19 -0.43 -0.6 -0.22 -0.66 1.6 -0.77 -1.52 -0.14 0.82 1.18 -0.66 1.33 0.31 0.97 -1.14 0.84 0.92 1.37 0.85 0.54 -0.66 -1.9 0.11 -1.02 -1.28 -5.16 -4.48 -4.54 -4.97 -5.38 -4.32
1.5 1.7 -0.11 -0.19 -0.95 -1.38 -0.44 -0.25 1.01 -0.83 -0.58 1.75 -3.07 1.76 0.29 -0.7 -1.91 0.08 -1.6 -1.15 -0.14 2.1 -2.36 -3.79 0.33 -1.14 -1.59 -3.07 -2.46 -2.69 -2.25 -1.87 -2.91
0.24 1.23 -4.32 -2.73 -2.74 - 2.25 - -5.65 - -1.8 1.42 0.89 0.95 -2.64 -1.92 0.03 - - -4.73 -2.38 2.9 1.78 -0.64 1.01 -1.22 0.12 - -3.68 -1.34 - - -1.51
-1.1 0.35 -2.22 -2.23 -4.08 -4.47 2.17 -4.35 -4.1 -3.56 0.35 0.75 -1.74 1.52 0.01 2.08 -2.23 1.32 1.21 1.77 1.23 -0.27 -2.11 -0.8 -0.47 -3.31 -3.21 -1.76 -2.83 -2.67 -2.62 -1.06 -3.3
0.16 1.6 -2.55 -1.73 -1.94 -2.54 1.75 -3.69 -4.33 - - 1.49 0.72 2.61 - - -2.21 - - - - 2.25 1.42 -0.46 1.76 -0.17 0.21 - - -3.36 - - -
0.56 1.02 -0.15 -0.41 -0.58 -0.41 0.99 -0.34 0.19 0.25 -0.03 0.89 -2.45 1.58 -0.33 0.07 -1.27 1.37 0.19 0.73 0.6 0.5 -1.76 -3.89 -1.46 -0.04 -0.22 -2.27 -1.21 -1.09 -1.82 -1.64 -1.05
1.39 2.3 -0.92 -1.54 -3.7 -3.98 1.42 -3.38 -4.16 -3.14 0.26 2.2 0.24 2.34 -4.97 -0.83 -1.13 -0.81 -0.24 -1.88 -0.83 1.92 - -0.26 0.03 -1.57 -2.45 - - - - - -
-0.44 1.19 -0.1 -0.02 -0.25 -0.59 1.94 - -2.83 - - -0.43 0.84 2.67 - 0.49 -1.3 - 1.55 0.49 - 1.6 0.78 0.33 0.62 - - - - - - - -
0.63 2.5 0.19 -2.73 -0.99 -2.09 1.9 -1.78 -2.59 -2.56 -2.01 2.05 -0.11 1.64 - -2.03 0.77 - -1.97 -1.45 -3.01 0.4 - -0.39 1.0 - -3.68 -1.91 -0.4 -0.29 -0.4 -0.39 -0.44
-0.56 0.39 -0.54 -0.52 -1.12 0.15 0.81 -3.89 -2.94 - 1.1 1.03 0.2 0.35 0.21 0.26 -1.26 0.69 1.65 -0.08 1.36 1.05 0.35 0.68 1.38 -2.92 -0.36 - - - - - -
-1.09 -0.65 -0.03 -0.17 -0.39 - 0.51 -1.01 - 1.49 1.79 3.22 -0.57 -0.04 -0.04 -0.13 0.26 - -0.07 -0.14 - 1.81 - - 0.52 - - - -2.23 - - - -
1.18 2.04 0.34 0.18 -0.99 -0.89 1.27 0.32 -0.02 -1.11 -2.96 0.57 -0.11 0.74 -1.64 -1.21 -0.31 -2.3 -3.06 -1.68 -2.07 1.84 0.06 0.14 -0.61 -0.32 -0.36 -1.29 -0.05 -0.16 -2.89 -1.84 -0.36
0.87 1.7 -0.8 - - - 1.67 - - - - 2.59 - 1.07 - - -1.51 - - - - 2.32 1.76 0.41 2.51 - -1.77 - - - - - -
0.65 1.18 -0.85 -0.6 -1.05 -1.14 1.84 -1.45 -0.7 -1.48 -2.0 2.02 0.11 1.65 -0.19 -4.09 -0.1 -2.34 -2.03 -2.51 -1.74 1.27 -1.8 -2.67 1.21 -0.74 -0.15 -1.69 -1.69 0.42 -1.17 -0.65 0.09
-1.69 -0.2 -2.42 -0.27 0.17 -0.8 -0.03 0.44 1.09 0.53 -3.77 3.16 -0.19 2.14 -4.91 - -0.61 - - - - 1.11 0.66 -0.22 1.73 -4.03 -2.62 - - -5.41 -6.13 -6.07 -
-2.88 0.04 -3.88 -3.36 -3.39 -4.16 1.0 -1.92 -1.81 -2.58 -0.89 1.65 -2.97 2.84 0.08 -0.27 -1.37 -0.5 -0.82 -0.33 -0.94 1.63 -2.73 1.03 -0.05 0.35 0.02 -0.3 0.17 -0.57 -1.08 -0.51 -0.56
1.25 2.29 -0.63 -0.49 -1.89 -2.14 2.35 -1.15 -2.99 -3.22 -1.71 2.57 -2.02 1.4 -0.08 -1.76 -4.04 -1.6 -1.49 -2.02 -2.38 2.32 -3.44 -0.5 -1.89 -2.02 -2.1 - - - - - -
0.17 -0.8 0.37 -0.6 0.08 -0.3 0.77 -1.65 -0.76 -1.59 1.31 -0.06 0.79 -0.81 -1.18 1.08 -1.1 1.06 1.05 0.05 0.78 -0.3 -1.53 1.35 1.06 -0.36 0.62 -3.58 -3.38 -2.58 -2.66 -2.8 -3.11
1.88 2.36 -0.15 -0.94 -2.05 -1.83 1.15 -1.78 -0.54 -2.78 -1.29 2.38 -1.98 2.21 -4.05 -1.04 -3.22 -1.89 -3.76 -4.57 -2.95 2.25 -2.09 -2.4 0.47 -4.31 -3.43 -3.86 -2.79 -3.42 -4.71 -4.21 -2.77
0.64 1.02 -0.78 -1.76 -3.4 -1.7 1.27 -2.48 -3.95 -0.56 0.37 1.35 -2.42 2.87 -0.36 0.95 -3.81 0.88 0.83 1.28 0.62 1.0 -3.71 -4.42 -1.2 -1.76 -2.03 - -8.83 - - -9.5 -
0.32 1.41 -1.51 -5.01 -2.99 -3.78 2.08 -3.92 -4.56 - -0.27 2.24 0.11 1.21 -2.01 -1.16 -2.11 0.97 0.6 -1.04 0.1 2.02 - 1.37 1.14 -2.14 -3.48 - - -5.72 - - -3.93
1.58 2.24 -1.08 -0.7 -2.55 -4.45 1.02 -2.84 -3.64 -2.87 -9.61 1.43 - 3.11 - -5.78 -6.22 - - - - 3.27 -2.07 - -2.31 -3.73 -3.58 - - - - - -
1.58 2.72 0.21 -2.49 - - 1.02 -2.56 - - 0.98 2.41 -2.79 1.67 -1.7 -3.11 -1.57 0.44 - -3.12 0.43 1.71 - 0.11 0.4 - -6.47 - - - - - -
1.24 1.87 -0.51 -0.86 -1.81 -0.75 0.61 -0.8 -1.32 -1.32 -0.76 1.13 -2.67 2.68 -2.77 0.32 -4.17 -0.3 -0.82 -0.29 -0.84 2.72 -5.67 -0.53 -1.0 -1.55 -1.92 - -7.58 -10.65 -10.18 - -11.5

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.