Heatmap: Cluster_239 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
1.26 1.45 0.31 0.49 0.24 0.44 0.06 0.61 0.91 0.68 -1.86 -0.05 -1.24 -0.45 -1.19 -1.7 -1.3 -1.59 -1.98 -1.75 -1.89 -0.11 -0.41 -1.84 -0.44 -0.31 -0.27 0.21 0.39 0.43 0.29 0.03 0.63
0.76 1.06 0.68 0.48 0.12 0.22 -0.14 0.05 0.01 -0.07 -0.52 -0.48 0.14 -0.8 -0.22 -0.87 -1.51 -0.55 -0.45 -1.02 -0.63 -0.16 0.37 0.75 -0.23 -0.41 -0.52 0.15 0.45 0.08 0.28 -0.45 0.02
1.04 1.59 0.54 0.5 -0.68 -0.54 0.33 0.72 0.13 0.69 -1.34 -0.27 -0.1 -0.84 -1.93 -1.35 -0.88 -1.5 -1.69 -1.82 -2.13 -0.05 -0.37 0.12 -0.62 -0.74 -0.77 -0.06 1.0 0.88 -0.09 -0.39 0.91
0.49 0.48 0.12 -0.05 0.04 0.42 0.06 0.86 0.74 0.59 -0.19 -0.12 -0.16 -0.17 -0.37 -0.43 -0.52 -0.64 -0.61 -0.48 -0.5 0.01 0.29 0.24 -0.34 -0.2 -0.28 -0.29 0.02 -0.02 -0.32 -0.48 0.0
1.53 2.01 0.28 0.03 0.39 0.62 0.31 0.53 1.01 0.5 -2.68 0.24 -3.09 0.23 -6.78 -6.87 -2.44 -2.75 -5.22 -5.29 -6.84 -0.7 -1.92 -1.73 -0.29 -0.99 -0.82 -0.12 0.94 1.28 -0.14 -0.16 0.78
0.99 1.19 0.3 -0.02 0.16 0.39 -0.52 1.08 0.82 0.44 -0.72 -0.4 -0.18 -0.57 -0.54 -1.13 -1.08 -1.04 -1.02 -1.02 -1.0 -0.03 0.02 -0.26 -0.53 -0.07 -0.23 -0.1 0.19 0.34 -0.01 -0.35 0.27
0.74 0.99 0.19 -0.14 0.09 0.55 0.07 0.63 0.58 0.67 -0.73 -0.16 -0.11 -0.14 -0.25 -0.72 -0.78 -0.83 -0.76 -0.75 -0.67 0.26 0.43 -0.09 -0.39 -0.12 -0.18 -0.31 0.06 -0.07 -0.23 -0.6 0.01
0.7 0.75 0.05 -0.23 0.16 0.36 -0.08 0.7 0.96 0.23 -0.51 -0.25 -0.3 0.01 -0.39 -0.95 -1.12 -0.71 -1.01 -0.96 -1.02 0.21 0.72 0.05 -0.55 0.12 -0.03 -0.15 0.26 0.19 -0.16 -0.64 0.17
0.81 1.26 -0.04 -0.06 -0.17 0.33 -0.42 0.7 0.59 0.57 -1.7 -0.73 -0.8 -0.38 -0.88 -2.06 -1.32 -1.72 -1.62 -1.75 -1.61 -0.33 0.25 -0.05 -1.26 -0.17 -0.26 0.56 0.89 0.93 0.62 0.04 0.87
0.95 0.97 0.31 0.07 -0.11 0.31 0.09 1.21 0.91 0.52 -1.17 -0.11 -0.21 -0.25 -0.65 -1.38 -0.61 -1.31 -1.15 -1.21 -1.41 0.12 0.62 -0.0 -0.06 0.06 -0.01 -0.66 -0.2 -0.01 -0.62 -0.6 0.16
1.12 1.26 0.32 0.21 0.18 0.49 0.2 0.92 0.53 0.52 -0.21 -0.41 -0.11 0.14 -0.48 -0.72 -1.12 -0.26 -0.43 -0.58 -0.74 0.51 0.65 -0.05 0.27 -0.05 0.01 -1.5 -1.4 -1.51 -1.39 -1.87 -1.24
1.0 1.4 0.31 0.27 0.15 0.05 -0.26 0.9 0.91 0.66 -1.08 -0.58 -0.45 -0.49 -0.87 -1.72 -0.88 -1.33 -1.11 -1.24 -1.23 0.09 0.39 -0.36 -0.43 0.07 -0.15 -0.09 0.2 0.2 -0.1 -0.46 0.22
0.77 1.5 0.02 0.36 -0.3 0.03 0.3 -0.37 -0.27 -0.04 -0.54 -0.28 -0.63 -0.71 -1.23 -0.37 -0.93 -1.29 -0.32 -0.28 -0.47 -0.63 0.46 0.22 -0.22 -0.19 -0.17 -0.0 0.58 0.48 -0.04 -0.0 0.7
0.89 1.1 0.27 0.18 0.3 0.65 0.04 0.99 1.05 0.68 -0.63 -0.28 -0.88 -0.12 -0.44 -0.92 -0.76 -0.85 -1.12 -0.95 -0.92 -0.13 0.26 -0.52 -0.56 0.04 -0.03 -0.53 -0.08 -0.07 -0.5 -0.85 -0.02
0.72 1.23 0.17 0.62 -0.16 0.29 -0.63 -0.01 -0.34 0.65 -0.72 -0.4 -0.42 -0.63 -1.05 -1.11 -1.0 -0.74 -0.79 -0.9 -0.79 -0.56 -0.1 -0.2 -0.86 -0.18 -0.17 0.46 0.72 0.64 0.53 0.1 0.85
1.0 1.61 0.24 0.45 -0.22 0.02 -0.15 0.24 0.21 0.55 -0.88 -0.29 -0.14 -0.43 -0.5 -1.57 -0.47 -1.29 -1.26 -1.21 -1.17 0.19 0.52 -0.21 -0.33 -0.22 -0.26 0.01 0.29 0.34 -0.1 -0.39 0.28
0.85 0.92 0.66 0.46 0.36 1.0 0.41 0.88 0.92 0.92 -1.39 -0.3 -2.19 -0.81 -1.24 -1.77 -3.03 -1.29 -1.27 -1.29 -0.96 -0.24 -0.68 -0.13 -0.47 0.19 -0.18 -0.0 0.36 0.24 -0.03 -0.26 0.19
0.83 0.92 0.38 -0.13 0.02 0.14 0.26 0.81 0.62 0.18 -0.57 -0.35 0.5 -0.2 -0.4 -1.05 -0.57 -0.8 -1.01 -0.91 -0.92 0.12 0.45 0.74 -0.26 -0.12 -0.11 -0.48 -0.17 -0.11 -0.67 -0.93 0.13
0.78 1.05 0.31 0.08 0.13 0.3 0.15 0.58 0.59 0.19 -0.97 0.05 0.48 -0.0 -0.67 -0.85 -0.78 -1.13 -1.08 -1.18 -0.97 0.51 0.88 0.25 -0.2 -0.22 -0.3 -0.44 -0.12 -0.11 -0.52 -0.9 -0.05
1.24 1.65 0.27 0.13 -0.09 0.11 -0.76 0.48 0.42 -0.04 -1.35 -1.2 -1.18 -0.98 -0.88 -1.92 -0.69 -1.5 -1.47 -1.83 -1.39 -1.16 -0.88 -1.06 -1.18 -0.23 -0.11 0.8 1.15 0.97 0.85 0.42 0.65
1.21 1.44 0.55 0.24 -0.01 0.74 -0.09 0.72 0.5 0.62 -0.97 -0.53 -0.99 -0.34 -0.39 -1.7 -0.39 -1.09 -1.43 -1.65 -1.9 -0.32 -0.23 -0.62 -0.78 -0.12 -0.26 -0.31 0.41 0.56 0.07 -0.02 0.13
0.85 1.4 0.58 0.45 -0.17 -0.03 -0.25 0.69 0.35 0.74 -0.5 -0.15 -0.55 -0.04 -0.53 -1.27 -1.42 -0.73 -0.95 -0.92 -0.65 0.11 0.12 -0.73 -0.9 -0.25 -0.34 -0.02 0.62 0.21 -0.07 -0.6 0.25
0.88 1.25 0.22 0.48 -0.15 0.09 -0.15 0.23 0.24 0.76 -0.74 -0.28 -0.81 -0.34 -0.58 -1.25 -1.19 -1.28 -1.14 -1.07 -1.02 -0.26 -0.0 -0.1 -0.89 -0.04 -0.09 0.26 0.64 0.69 0.33 -0.2 0.54
0.59 1.26 -0.16 -0.18 -0.43 -0.21 0.13 0.11 0.36 0.17 -0.52 -0.08 0.96 0.21 -1.07 -0.75 -1.1 -0.73 -0.55 -0.74 -0.6 0.46 0.8 0.93 -0.42 -0.22 -0.24 -0.57 -0.01 0.05 -0.56 -1.13 -0.01
1.81 2.61 0.48 0.71 -0.61 -0.96 0.32 - 0.28 -2.91 -3.18 1.17 -2.86 -2.21 -3.21 - -3.95 - -3.83 - -3.86 2.15 -2.6 - -1.3 0.02 0.09 -1.34 -1.17 0.56 -1.1 -1.35 1.73
0.92 1.29 0.58 0.6 0.11 0.39 -0.37 0.08 0.19 0.19 -1.61 -0.72 -0.81 -0.36 -1.04 -1.7 -0.69 -1.02 -1.53 -1.62 -1.22 -0.33 0.09 -0.16 -0.37 -0.56 -0.43 0.57 0.94 0.68 0.56 0.0 0.51
0.92 1.27 0.47 0.64 -0.1 0.19 -0.97 0.58 0.52 0.66 -1.17 -0.9 -1.0 -1.29 -0.84 -1.34 -0.54 -1.38 -1.37 -1.32 -1.28 -0.76 -0.16 -0.81 -1.1 0.14 0.0 0.41 0.7 0.69 0.38 0.37 0.8
0.22 0.6 0.01 -0.33 0.09 0.64 0.04 0.74 0.87 0.4 -0.35 0.07 0.25 0.36 -0.87 -0.69 -0.75 -0.42 -0.65 -0.87 -0.65 0.27 0.5 0.03 -0.06 -0.42 -0.36 -0.47 0.06 0.15 -0.37 -0.76 0.05
0.83 1.48 0.31 0.51 0.4 0.24 0.59 0.64 0.15 0.71 -0.64 -0.09 -0.1 -0.42 -0.47 -1.13 -0.64 -0.63 -0.67 -1.05 -0.45 0.05 -0.15 0.34 0.46 -0.13 0.05 -1.17 -0.49 -0.42 -1.21 -1.42 -0.67
0.38 0.88 0.21 0.47 -0.23 0.12 -0.04 0.11 -0.24 0.69 -0.53 -0.28 -0.5 -0.22 -0.74 -0.95 -0.17 -0.35 -0.55 -0.43 -0.45 0.55 0.44 -0.71 0.12 -0.52 -0.46 0.09 0.44 0.35 -0.01 -0.15 0.36
2.82 3.39 - - -0.59 -0.74 2.06 - - - - - - - - - -5.43 - - - - - - - - 0.37 -0.1 -1.69 2.04 -0.59 0.44 -0.7 -0.58
0.72 1.19 -0.06 -0.13 -0.16 0.16 -0.02 0.22 0.55 0.08 -0.46 0.02 0.4 0.08 -0.73 -0.66 -0.45 -0.77 -0.71 -0.7 -0.6 0.34 0.67 0.21 -0.1 0.03 -0.04 -0.41 -0.04 -0.01 -0.49 -0.75 -0.01
0.57 0.69 0.14 -0.17 -0.08 0.27 0.26 0.28 0.16 -0.04 -0.19 0.25 0.42 0.6 -0.41 -0.13 -1.29 -0.5 -0.5 -0.66 -0.53 0.61 0.77 0.46 -0.06 -0.35 -0.37 -0.83 -0.19 -0.06 -0.75 -1.0 -0.18
0.85 1.27 0.4 0.17 -0.31 -0.55 -0.45 0.55 0.22 0.07 -0.29 -1.24 -0.88 -0.42 -0.98 -0.58 -0.87 -0.03 -0.41 -0.59 0.14 -0.39 -0.48 -0.42 -0.85 -0.47 -0.7 0.71 0.96 0.48 0.45 0.1 0.21
0.72 0.83 0.25 -0.19 -0.27 -0.12 0.23 0.42 0.43 0.35 -0.44 -0.11 0.48 -0.07 -0.4 -0.56 -0.71 -0.65 -0.66 -0.65 -0.64 0.35 0.85 0.79 -0.3 -0.37 -0.42 -0.5 -0.16 -0.09 -0.41 -0.79 0.02
0.85 1.6 0.7 1.06 0.24 -0.06 0.34 0.27 0.53 1.24 -1.26 -0.47 -1.47 -0.18 -1.41 -1.46 -0.98 -1.28 -1.59 -1.26 -1.2 -0.45 0.15 -0.23 -0.59 0.09 0.01 -0.51 0.01 0.28 -0.6 -0.44 0.09
0.99 1.27 0.49 0.38 0.19 0.25 -0.99 1.1 0.9 1.43 -1.17 -0.96 -1.41 -0.74 -0.9 -1.82 -0.85 -1.58 -1.71 -1.76 -1.78 -0.83 -0.47 -1.28 -1.37 0.12 0.02 0.2 0.45 0.54 0.29 -0.06 0.58
1.28 1.66 0.58 0.78 0.6 1.03 -1.23 0.59 0.36 0.77 -1.73 -1.77 -2.5 -1.34 -1.07 -2.29 -0.84 -1.95 -1.77 -2.41 -1.73 -1.43 -1.5 -2.07 -1.4 -0.27 -0.33 0.65 0.76 0.73 0.66 0.57 0.37
1.06 1.55 0.59 0.52 0.2 0.48 0.02 0.22 0.28 0.76 -0.99 -0.36 -0.53 -0.36 -0.21 -1.14 -0.26 -0.98 -0.62 -0.68 -1.12 -0.21 0.16 -1.59 0.07 -0.38 -0.54 -0.14 0.02 0.06 -0.02 -0.81 -0.09
0.91 1.18 0.37 0.27 0.66 0.62 0.19 1.17 1.24 0.98 -0.83 -0.5 -1.39 -1.06 -0.31 -0.83 -2.34 -0.91 -1.31 -1.25 -1.21 -1.17 -2.07 -1.84 -0.29 0.32 0.21 -0.35 0.03 0.26 -0.23 -0.22 0.21
0.72 0.85 0.13 0.08 0.41 0.67 -0.18 0.79 0.71 0.56 -0.34 -0.08 -0.8 0.13 -0.12 -0.81 -0.67 -0.48 -0.83 -0.67 -0.67 0.28 0.79 -0.57 -0.19 0.03 0.18 -0.79 -0.2 -0.19 -0.88 -1.22 -0.37
1.48 1.35 0.46 0.13 0.12 0.31 1.4 -0.38 -0.21 -1.24 -2.36 -0.38 -0.88 -1.42 -1.16 -2.19 -1.26 -2.5 -2.34 -2.26 -2.25 -1.38 0.67 -0.3 -1.26 -0.3 -0.46 0.43 1.12 1.08 0.18 0.01 0.92
1.16 1.61 0.12 -0.27 -0.11 0.82 0.56 -0.36 0.19 0.19 -4.15 0.62 -2.36 0.31 -4.46 -4.04 -2.07 -3.5 -4.6 -4.21 -3.83 -0.61 -1.55 -2.27 -0.39 -0.2 -0.22 0.52 1.18 1.47 0.48 0.21 1.15
1.07 1.47 0.56 0.55 0.56 0.89 -0.43 0.75 0.89 1.07 -2.32 -0.78 -1.99 -0.39 -2.65 -2.94 -0.54 -2.4 -3.02 -2.86 -2.83 -0.96 -0.61 -1.73 -1.06 -0.13 -0.14 0.27 0.79 0.86 0.25 -0.26 0.66
1.09 2.12 0.46 0.84 0.25 0.57 0.28 0.08 -0.2 1.49 -1.84 -1.31 -0.95 -0.84 -2.46 -2.21 -1.09 -1.9 -3.21 -2.21 -2.96 -0.4 -0.38 -1.28 -1.81 -0.47 -0.08 -0.56 1.01 0.92 -0.45 -0.75 0.69
0.67 0.94 0.04 -0.01 0.1 0.86 -0.01 1.27 0.63 0.7 -2.79 0.2 0.33 -0.1 -3.74 -2.6 -0.9 -2.39 -3.32 -3.67 -3.86 1.0 0.21 0.96 -0.31 -0.11 -0.34 -0.44 -0.08 0.45 -0.42 -0.36 0.13
0.34 0.47 -0.25 -0.14 -0.18 0.13 -0.09 0.58 0.7 0.25 -0.19 0.2 0.13 0.12 0.44 -0.18 -0.81 -0.36 -0.09 -0.59 -0.24 0.28 -0.02 0.39 -0.09 -0.17 -0.25 -0.43 -0.16 0.03 -0.38 -0.85 -0.05
1.47 1.74 0.63 0.46 0.09 0.59 0.42 0.0 0.44 1.11 -0.67 -1.3 -2.26 -1.56 -0.89 -1.67 -0.85 -0.95 -0.86 -1.01 -0.5 -1.8 -3.58 0.13 -1.93 0.14 -0.1 -0.02 0.08 0.21 -0.2 -0.36 0.73
0.44 0.69 0.27 0.44 -0.08 -0.08 -0.11 0.21 0.03 0.07 -0.33 -0.3 -0.43 0.01 -0.85 -0.14 -0.39 0.01 -0.23 -0.6 -0.28 0.22 0.37 -0.26 -0.11 -0.38 -0.38 -0.09 0.38 0.41 0.06 -0.32 0.41
0.45 0.52 -0.15 -0.13 0.21 0.77 -0.57 0.82 1.09 0.57 -0.62 -0.21 -0.08 -0.03 -0.62 -0.49 -0.67 -0.97 -0.83 -0.88 -0.96 0.11 0.59 -0.18 0.1 -0.22 -0.26 0.15 -0.2 0.01 -0.21 -0.43 0.11
1.8 1.56 0.42 0.2 0.3 -0.09 1.05 0.55 0.89 0.55 -2.61 -1.48 -0.51 -2.15 -7.93 -3.93 -2.8 -1.46 -6.37 -3.5 -4.53 -2.77 -6.47 -1.09 -1.34 -1.01 -1.19 0.21 1.35 1.2 -0.03 -0.13 1.6
1.06 1.58 0.08 0.07 -0.33 0.05 -0.15 0.55 0.42 0.36 -1.28 -0.48 0.57 0.27 -0.93 -1.08 -0.61 -1.17 -1.16 -1.27 -1.18 0.2 0.74 1.02 -0.25 0.1 0.07 -0.72 -0.35 -0.31 -0.71 -1.14 -0.5
0.97 1.52 0.54 0.53 -0.07 0.14 0.44 0.43 0.07 0.43 -0.73 -0.25 0.19 -0.9 -0.9 -0.51 -0.67 -0.69 -0.72 -1.21 -1.07 -0.33 -0.42 -0.59 0.1 -0.18 -0.22 -0.33 0.15 0.09 -0.46 -0.54 0.67
1.52 2.28 -0.22 -0.65 -0.44 0.44 0.66 -0.39 0.35 -0.28 -3.66 0.39 -4.29 0.29 - -6.38 -4.6 -2.52 -5.33 -5.39 -4.77 -1.14 -1.37 -3.09 -0.5 -0.25 0.15 -0.57 1.43 1.69 0.06 -0.32 1.15
0.61 1.19 -0.38 0.07 0.23 0.54 0.22 0.88 1.25 0.71 -1.12 -0.09 -0.07 -0.5 -1.24 -1.6 -2.05 -1.19 -1.61 -0.9 -1.17 0.03 0.08 0.48 -0.42 -0.19 -0.07 -0.25 0.25 0.19 -0.31 -0.48 0.25
1.21 1.86 0.9 1.09 0.27 0.73 -1.11 0.73 0.72 0.78 -1.86 -1.47 -1.83 -0.71 -1.75 -2.39 -0.92 -2.19 -1.99 -2.52 -1.96 -1.49 -1.03 -0.87 -1.48 -0.22 -0.33 0.09 0.76 0.64 0.21 -0.33 0.66
0.86 1.5 0.08 0.37 -0.12 0.16 -0.25 -0.24 -0.35 0.74 -1.02 -0.7 -0.7 -1.52 -1.33 -2.06 -0.87 -1.14 -1.41 -1.49 -1.38 -0.7 -0.35 -0.57 -1.67 0.17 0.19 0.41 1.33 1.09 0.56 0.15 0.85
0.79 0.68 0.04 -0.18 0.04 -0.54 0.22 0.41 0.18 -0.13 -0.82 0.02 0.27 -0.26 -0.09 -0.58 -1.53 -0.61 -0.58 -0.59 -0.67 0.14 1.07 1.25 -0.11 -1.06 -0.92 -0.3 0.11 0.09 -0.2 -0.5 0.32
0.72 1.1 0.4 0.16 -0.09 0.17 -0.42 0.1 -0.18 0.51 -0.28 -0.38 -0.91 0.12 0.01 -0.37 -1.24 -0.18 -0.04 -0.26 -0.41 -0.21 -0.1 -1.24 -0.73 -0.22 -0.25 0.27 0.49 0.27 0.27 0.04 0.21
1.79 1.94 0.33 0.18 -0.06 0.31 0.77 0.7 0.72 0.94 -3.91 -0.91 -4.12 -2.64 -2.73 -4.44 -4.85 -3.75 -5.89 -5.53 -5.71 -5.14 -4.54 -5.61 -3.56 -1.27 -1.33 1.46 0.41 -0.03 0.65 0.93 1.81
0.82 1.51 0.54 0.88 0.15 0.48 0.4 0.5 0.36 1.01 -0.7 -0.28 -0.54 -0.61 -0.58 -1.12 -0.79 -1.06 -1.41 -0.94 -0.93 -0.37 -0.88 -1.08 -0.51 -0.36 -0.38 0.03 -0.1 0.08 -0.03 0.08 0.1
1.16 1.87 0.36 0.59 -0.07 0.2 -0.08 0.79 0.68 0.91 -1.33 -0.39 0.59 -0.06 -1.67 -1.52 -1.29 -1.5 -1.55 -2.09 -1.62 -0.16 0.23 0.89 -0.82 -0.41 -0.39 -0.92 -0.19 -0.15 -0.92 -1.43 -0.2
0.9 1.19 0.19 -0.26 0.05 0.15 0.17 0.43 0.51 0.11 -0.91 -0.22 0.28 -0.07 -1.12 -1.02 -1.4 -1.02 -1.0 -1.16 -1.21 0.3 0.65 0.6 -0.46 -0.25 -0.28 -0.22 0.33 0.35 -0.04 -0.59 0.34

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.