Heatmap: Cluster_61 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- -3.61 - - - - -2.83 - -1.23 - - 1.19 -1.89 0.52 - - 0.5 - - - - 2.59 2.77 2.7 2.82 -3.94 -1.0 - - - - - -
-0.64 -0.22 -1.18 -1.8 -1.16 -2.5 -3.38 -2.58 -1.67 -1.13 0.19 1.62 -1.87 - 1.09 0.0 -0.1 -1.89 -3.37 -1.76 -1.56 3.12 -0.2 0.15 0.18 -1.77 -1.22 0.65 0.23 0.25 0.19 0.14 -0.26
- - - -4.24 - -1.79 - -3.73 - - - 2.21 1.49 - - -1.75 -0.03 - - - - 3.96 - 0.74 2.26 -1.58 0.63 - - - - - -
-1.87 -1.61 -5.17 -2.48 -2.26 -2.77 -3.08 -2.24 -2.77 -3.61 0.02 0.31 0.83 -1.03 -1.29 0.34 1.19 -0.22 -0.48 -0.1 0.07 2.39 0.93 -0.66 1.4 -1.61 -0.3 0.48 1.34 -0.89 0.57 0.36 -1.14
- - - - - - 0.44 - - - 2.08 - - - - - 1.59 - - - - - 4.51 - - - -1.83 - - 0.5 - - -
- - - - -4.28 - - - -2.95 - - - 0.91 1.23 - - 0.53 - - - - 0.55 4.36 1.5 - -0.27 0.57 - - - - - -
-2.89 -1.94 -2.43 -2.2 -1.84 -1.23 -1.57 -4.76 -1.74 -1.96 -1.92 0.27 0.47 0.6 -3.53 -3.03 1.4 - - - - 1.55 3.65 -1.08 1.57 0.01 1.35 -3.36 -2.12 -1.94 -4.56 -3.94 -2.46
-4.38 -2.7 - - -8.26 - -2.11 - -6.93 - -1.99 -0.76 2.1 0.87 0.62 -1.55 1.54 -1.39 -1.2 -0.77 -1.34 1.2 3.05 -1.27 2.46 -1.85 -0.53 -3.35 -3.24 -0.94 -2.32 -3.14 -0.97
-1.05 -0.89 -0.64 -0.71 -0.94 -0.19 -0.5 -0.99 -2.19 -0.14 -1.08 -0.02 0.55 0.58 -3.08 -0.85 0.26 -1.04 -0.46 -1.02 -2.32 -0.53 1.1 2.08 0.55 -0.43 -0.11 0.6 0.42 0.74 0.22 -0.11 0.99
-0.44 -0.79 -0.69 -0.84 -0.56 0.02 -0.22 -0.53 -0.45 -0.84 -0.78 -0.6 0.26 0.52 -1.25 -0.68 0.43 -1.16 -0.73 -1.09 -0.94 0.14 0.61 2.31 0.18 -0.06 0.16 0.28 0.42 0.18 -0.24 -0.26 0.59
-1.36 -1.58 -0.95 -1.23 -0.73 -0.98 0.6 -0.65 -0.92 -0.27 0.49 0.5 -0.4 1.49 0.98 0.05 0.1 0.84 -0.23 0.98 0.56 0.55 -1.02 -0.14 0.29 -0.8 -0.67 -0.62 -0.5 0.03 -0.12 -0.28 -0.46
-5.15 - - - - - -2.9 - - - -4.54 0.46 -0.8 0.92 - -3.53 0.1 - -2.88 -3.53 -4.5 2.33 -0.04 4.19 -2.08 -0.87 -0.62 -1.75 -1.76 -1.67 -2.22 -1.36 -1.57
-1.8 -1.62 -1.31 -0.81 -0.79 -1.52 0.51 -1.64 -1.61 -2.01 -0.4 0.61 0.07 0.31 1.06 -0.39 0.54 -0.59 -0.7 -0.69 -0.62 0.91 0.57 1.35 0.33 0.44 0.32 0.16 0.11 0.17 0.29 0.42 0.13
- - - - -5.86 - -3.99 - - - -1.81 2.61 0.85 1.6 -5.27 -3.04 0.91 -5.2 - - - 3.48 2.03 -0.0 1.57 -3.65 -1.4 - -6.11 - - - -
-2.23 -2.89 -2.43 -3.12 -3.74 -4.98 -0.22 -5.7 - - - -0.21 -4.93 -0.33 -0.6 - -1.62 - - - - 0.52 0.42 4.66 -2.49 -2.51 -2.11 -5.78 - -5.85 - - -
-1.97 -0.82 -4.19 -7.25 - - -2.49 - - -3.17 -0.96 1.88 -2.73 - - -1.46 -1.84 -5.38 -2.68 - - 3.75 -2.12 -0.32 -0.96 -0.76 -0.52 0.87 0.26 -0.09 0.7 1.06 1.43
- - - - -3.95 - - -1.44 -2.06 - - -1.65 -2.7 - -1.64 - 1.75 - -1.67 - - 0.03 -0.77 4.52 - -3.05 -1.06 -2.57 - -1.77 -0.49 0.55 -
-3.23 -7.63 -3.33 -5.01 - - - - - - -5.61 0.82 2.22 -0.61 - - 1.23 - - - - 2.57 -0.6 3.48 2.24 -2.69 -0.54 - - - - - -
-2.51 -2.07 -2.03 -1.22 -1.26 -1.13 -0.49 -0.32 -0.69 -0.49 -2.07 0.84 -0.77 1.84 0.78 -2.13 0.77 -1.89 -4.03 -2.78 -3.19 2.97 -1.11 2.51 0.82 -1.2 -0.92 -2.47 -3.98 -1.92 -3.07 -2.94 -1.9
- - - - -4.96 - - - - - - -0.92 2.11 2.17 - - 1.38 - - - - 2.39 3.03 - 2.32 -0.38 0.63 - -3.67 - - - -2.55
-3.61 -3.83 -3.43 -5.52 -4.32 - 2.25 - - - 0.66 -1.3 0.34 - 0.9 0.26 1.18 - -0.41 0.09 -2.53 2.1 -0.34 2.91 -0.18 -0.74 -1.01 -1.72 -3.07 -0.2 -2.08 -0.05 -1.97
- - - - - - - - - - - 1.85 -0.55 - 1.74 -1.29 0.94 - - -2.88 - 3.17 - - 0.06 -1.55 -1.77 1.51 1.22 -0.68 0.73 0.3 1.82
- - - - - - - -6.4 - - - -5.55 -6.63 -2.38 - - -1.29 - - - - -1.71 -2.21 4.81 -5.51 -2.87 -2.18 -0.16 -2.71 -1.83 -0.24 -0.18 -1.38
-0.96 -0.61 -2.09 -3.8 -3.22 - -0.86 -3.11 -4.16 -3.73 - -0.5 0.67 1.76 - -3.34 -0.56 - -3.28 - -5.31 2.46 1.88 3.71 -2.89 -3.83 -1.77 -3.61 -1.99 -0.97 -2.82 -4.7 -1.96
0.02 -0.58 -2.27 -2.83 -1.44 - 0.16 -1.9 - - - -1.14 0.87 1.87 - - -0.97 - - - - 2.21 2.83 3.05 - -2.34 -1.23 -4.03 -0.45 -0.06 -2.0 - -3.69
-8.48 -5.71 -8.89 -7.33 - - -5.22 -8.04 - - -1.91 -0.34 -1.52 0.53 -3.25 -1.89 1.51 0.34 -0.78 -1.33 -0.68 1.93 -4.37 3.43 -1.84 -0.98 -1.23 0.27 -1.14 0.34 0.22 1.0 1.04
- - - - - - -3.6 - -2.55 -2.97 - 0.77 0.56 -0.54 - - 1.94 - -2.57 -2.64 - 4.33 0.14 -0.79 0.82 -2.42 -0.39 -3.86 - - - - -
- - -5.67 - - - -1.37 - - - - 0.38 -0.15 3.18 - - 0.27 - - - - 3.69 1.95 -0.93 -0.52 -1.58 0.84 - - - - - -
- - - - - - - - - - -1.05 2.74 -1.58 - -1.49 - 0.14 - - - - 4.52 - -1.75 - -2.18 -3.9 -4.4 - - -4.3 -2.65 -2.48
- - - - -7.68 - - - -4.79 - - - - -2.04 - - -2.16 - - - - -3.88 -5.49 5.02 - - - - - - - - -
- - - - - - - - -6.07 -3.91 - -3.07 - - -3.47 - -2.15 - - - - -2.53 -3.6 5.01 - - -6.3 - - - - - -
- - - - - -2.78 -2.63 - - - - 0.78 -1.31 2.37 - - 0.66 - - - - 4.31 -0.69 - -1.53 -1.36 1.36 - - - - - -
- - -8.35 -6.14 -8.39 - -4.4 - - - -1.24 -0.86 -1.89 -3.14 - -1.51 1.04 -0.83 -2.27 -2.13 -3.01 2.15 -0.11 4.31 0.97 -2.53 -1.11 -4.54 -6.96 - -7.16 -2.64 -3.6
-1.11 -0.54 -2.37 -2.27 -2.97 -2.44 0.79 -5.85 -5.75 - -0.5 2.34 -3.7 2.28 -2.05 -1.0 -0.95 -0.07 -5.11 -2.37 -2.11 3.5 -5.2 0.78 -3.38 0.59 0.41 -6.08 - -6.2 - - -6.02
-0.24 -0.86 -3.08 -2.63 -3.94 -2.33 -4.49 -2.06 -1.73 -5.1 -4.89 2.2 -2.19 -3.08 -2.79 - 1.21 - - - - 3.35 -5.37 2.27 -1.51 1.48 0.87 -2.81 -3.17 -0.14 -1.91 -1.4 0.26
-4.35 -4.77 -4.59 -4.95 -6.02 -5.49 -3.34 -9.01 - - -5.03 0.35 0.63 0.16 -2.25 -4.79 1.69 -5.09 -5.38 -4.93 -4.9 2.74 2.33 3.46 0.49 -2.17 -0.51 -6.82 -7.7 -5.74 - - -9.06
- -2.22 -1.48 -4.52 -2.7 - 0.85 - - -2.52 -2.38 0.16 0.01 -0.15 -1.41 - 1.03 - - - - 2.92 0.31 0.65 -0.38 0.01 0.29 -0.13 0.7 1.63 0.21 0.19 1.71
- - - - - - - - -4.25 -5.29 -3.01 -2.75 - 3.57 -4.86 -3.95 -0.06 -1.72 -3.01 -1.67 -2.51 4.22 -6.57 - - -3.31 -3.35 - - - - - -
- - - - - - - -3.78 - - - -1.35 - -2.93 -2.93 - -1.14 - - - -0.41 -1.33 2.59 4.6 - -3.06 -2.4 - - - - - -
-4.19 - -4.98 - -4.76 - - - -2.87 - - -3.46 -2.53 1.5 -3.45 -2.54 -1.23 - -3.48 - - 2.41 3.55 3.5 - -3.85 -1.92 -3.77 - - -2.92 -4.27 -
-1.84 -1.84 -2.61 -3.67 -1.58 -2.01 1.8 -0.05 0.4 0.28 -1.24 1.65 -0.37 1.74 -1.35 -1.7 0.88 -1.54 -2.8 -1.86 -3.42 2.31 -0.42 -3.38 0.92 -0.84 -0.01 -4.12 -0.53 -0.96 -4.36 -3.23 1.54
-6.91 -4.59 - -5.25 -5.26 -2.72 -0.73 -1.83 -2.17 -1.77 - 2.43 -1.34 2.52 0.92 - 0.49 -4.76 - -4.93 - 2.66 0.22 2.92 0.01 -3.72 -2.46 - - -3.78 - - -5.81
- -0.5 - - -4.64 -1.55 -2.77 - -3.34 - - 0.56 -4.39 2.99 - -3.42 -0.13 - - - - 4.39 - - - -4.38 -2.42 - - - - - -
- - - - -5.55 - -5.3 - - - -1.05 0.92 -0.07 -0.34 -0.54 1.09 -0.06 -2.59 -1.27 -2.02 -0.4 4.12 -0.04 -0.91 2.0 -7.53 -5.04 -5.17 -3.19 -2.23 -2.99 -3.77 -
- - - - - - - - - - - 0.36 2.47 0.95 - - 1.4 - - - - 2.28 2.83 2.7 1.4 - -2.4 - - - - - -1.54
- -9.4 -6.0 - - - -2.62 -5.62 - - - -0.53 -2.59 -0.93 - - -0.37 - - - - 2.29 3.22 3.94 -2.64 -2.0 -2.0 -3.01 -6.14 -5.29 -5.64 -4.72 -2.35
-2.21 -1.79 -3.11 -3.68 -4.91 -3.05 0.65 -5.1 -5.25 - 0.77 -1.79 0.99 - 1.66 0.42 0.85 -4.17 -0.88 -0.05 -1.13 2.55 -2.56 2.81 0.19 -0.6 -0.49 -0.56 -2.4 -1.88 -3.07 -0.61 -0.45
- - - - - - - - - - -1.38 1.09 -3.68 0.21 -2.6 0.12 1.2 -2.53 -0.31 0.47 0.14 2.54 1.45 -1.27 2.65 0.21 0.92 -1.01 - -1.97 0.22 0.13 -0.08
-7.35 -5.83 - - -8.06 - -6.63 - -4.62 - -5.58 -2.16 1.12 -2.15 -2.44 -4.7 2.86 -4.54 -3.64 - -3.68 -0.72 - 3.52 -2.77 1.25 1.12 0.45 -0.88 -1.75 0.86 0.8 -3.75
- - - - - - - 0.89 - -0.95 - - -0.9 2.48 - - 0.35 - - - - 0.64 4.03 - - 0.22 2.06 - - - - - -
- -6.57 - - -9.05 - - - -7.76 - -0.33 0.29 -0.23 3.13 -3.94 -1.52 -0.15 -1.06 -2.14 -2.2 -1.32 3.8 1.42 -2.75 0.51 -2.22 -1.57 - - - - - -
- - - - 1.32 - - 0.98 - - - - - - - - 1.38 - - - - 4.39 - 1.58 - - - - - - - - 0.93
- - - - - - - - -0.22 - - 0.71 - - - - -0.15 - - - - -0.38 1.59 4.55 - -0.45 0.78 - - - - - -
-4.49 -3.68 -3.76 -1.74 -2.22 -4.83 -1.54 -0.77 0.05 -0.45 -3.1 1.38 -1.63 1.43 -0.96 -3.17 1.53 -1.59 -6.28 -4.76 -2.61 2.94 -2.2 2.86 0.14 -0.54 -0.45 -1.07 -2.12 -2.66 -1.11 -1.46 -1.24
0.44 0.16 -0.35 -1.08 -0.96 -1.75 0.47 0.02 -0.84 -1.42 -1.43 -0.42 0.13 -0.49 0.18 -1.56 0.58 -0.72 -0.94 -1.98 -1.43 1.27 0.53 2.33 0.23 0.13 0.27 0.11 -0.76 -0.61 -0.18 0.16 -0.37
- -5.5 -4.63 -3.45 -1.42 -3.7 -1.54 0.7 -2.7 -1.77 - -0.2 -0.28 2.38 - - 0.28 -2.49 -5.18 - - 3.11 1.59 1.34 0.82 0.02 0.9 -6.23 -1.15 -0.13 -3.45 -4.6 0.46
- - - - -3.3 - - -0.95 -1.19 - - 1.76 - 2.97 - - -1.22 - - - - 3.68 - 1.41 - 0.03 0.03 -0.9 -3.21 -1.55 -3.18 0.42 -1.49
-6.82 - -7.12 -8.23 -6.57 - -0.09 - -5.42 - -2.02 1.01 -0.45 1.13 -6.45 - 1.93 -2.79 - -5.54 -5.51 3.39 1.35 2.15 0.03 -0.48 -0.26 -3.23 -0.32 -0.38 -1.5 -2.41 -0.87
-1.62 0.69 -1.02 -2.69 - - 1.18 -3.34 - - -3.45 - 0.01 - - -0.99 1.52 - 0.06 - 1.03 -3.59 1.19 3.89 0.72 -1.68 -1.2 -2.22 -2.03 - -2.64 -1.55 -
-1.9 -1.23 -3.79 -6.61 -7.13 - 0.95 - -4.75 - - -2.83 -0.1 -1.37 -0.07 -3.91 1.06 -4.75 -3.27 - -4.89 -0.14 -0.19 4.08 0.07 0.33 0.56 -0.98 -0.94 -1.26 -1.15 -1.23 -0.54
-1.27 -2.67 -1.35 -1.83 -2.17 -1.92 -4.21 -4.5 -2.92 - -0.87 1.25 0.26 -3.38 - - 0.71 -5.89 - -5.06 -3.71 2.52 0.06 3.6 2.52 -2.74 -1.87 - - - - - -
- -5.71 - - -7.2 - -1.37 -5.84 - -5.39 -0.45 1.17 -0.41 1.01 1.4 0.28 0.87 -0.48 -0.49 0.07 -0.11 1.27 0.28 1.28 -0.14 -0.34 -0.45 0.64 0.32 0.04 0.53 1.18 0.73
- - - - - -1.54 - - - - - -2.41 - 2.24 - - 2.5 - - - - -1.5 - 4.26 1.33 - -4.08 - - - - - -
- - - -7.51 - - -4.92 -4.17 - - - -0.15 -0.79 -0.09 - - -0.44 -4.82 - -3.99 -3.38 -0.38 -1.85 4.79 -2.05 -1.54 -1.66 -5.01 - - - - -
- - - - - - 0.37 -5.57 - - -0.56 1.14 0.01 1.06 -0.06 -0.72 1.1 -1.29 -0.33 -0.79 -0.83 1.56 1.19 -0.88 0.47 -0.08 0.21 0.3 0.6 0.7 1.0 0.76 1.21
- - - - - - - -5.27 - -5.51 - -0.1 2.35 1.08 - - 1.48 - - - - 2.16 2.99 -0.08 2.42 0.09 1.17 - - - - - -
- - - - - -2.9 - -6.18 -3.09 - - 2.64 -1.33 2.14 - - 1.07 - - - - 2.72 2.1 1.63 1.49 0.36 0.61 - - - - - -
-1.71 -0.33 -5.15 -7.8 -7.91 - 0.13 - - -7.81 - -0.52 1.34 1.52 - - -0.35 - - - - 1.96 2.19 3.72 -0.6 -1.43 -0.0 - -3.72 -4.94 - - -3.44
- -7.47 - - - - - - - - - -1.75 1.76 0.6 - - 1.67 - - - - 1.55 3.55 3.1 -2.51 -2.13 -0.05 - - - - - -
-2.7 -1.68 -4.82 -4.44 -5.37 -5.32 -1.53 -1.18 -2.46 -2.24 -0.1 1.26 -0.16 1.1 1.32 -0.09 -0.26 0.05 -0.32 -0.99 0.13 2.77 -0.3 -0.68 0.76 0.49 0.69 -2.85 0.16 0.21 -2.98 -2.87 0.59
- - - - - - - - - - - 2.23 - 0.67 -2.19 - 0.78 - - - - 4.43 - - 1.37 -2.85 -0.99 - - - - - -
- - - - - - - - - - - -0.55 0.2 -0.55 - - 1.48 - - - - 2.29 4.31 1.2 -0.51 - - - - - - - -
-3.83 -4.76 -4.65 -4.42 -3.36 - -3.69 -1.43 -1.35 -2.65 - 1.11 -1.49 1.18 - -5.04 -0.06 -1.42 - -5.05 -2.43 2.34 -0.75 4.12 -3.33 -1.09 -0.91 -2.77 -1.5 -2.05 -2.42 -2.49 -2.76
- - -4.79 - -8.44 - -6.2 -9.07 -8.57 - -6.63 0.6 1.31 1.85 -4.35 -4.44 1.99 - -4.02 -4.93 -7.22 3.1 2.81 0.49 -0.46 -0.33 1.14 -4.68 -5.56 -3.51 -4.38 -2.28 -5.12
-3.18 -2.44 -2.21 -1.89 -1.01 -2.8 -0.83 0.36 -0.31 0.43 -0.41 1.01 -0.62 0.68 0.78 -0.96 0.58 -0.65 -0.39 -0.27 -0.35 1.6 0.42 1.16 0.06 -0.31 -0.17 -0.1 0.03 -0.31 0.12 0.73 -0.03
- - - - - - -6.13 -5.35 - - -1.57 1.14 -0.06 0.15 -3.07 -2.71 0.4 -1.83 -4.11 -5.17 -2.97 2.61 2.5 3.5 1.35 -2.81 -0.91 - -7.1 - - - -
-0.82 -1.13 -0.5 -1.52 -0.78 -1.56 -1.13 -0.61 -1.79 -2.11 -3.22 0.52 -0.07 0.9 -4.05 -5.99 -0.05 - - -4.85 -5.96 1.74 2.16 3.44 1.45 -1.31 -0.47 -4.05 -7.65 -9.35 -4.64 -1.99 -7.17
- -1.69 - - - - - - - - -0.57 1.23 1.33 1.0 -0.14 -1.55 1.24 - - - - 3.26 -0.26 1.53 2.93 -3.37 -1.59 - - -2.42 - - -
-0.88 -1.78 -0.9 -0.96 -1.08 -1.66 -0.23 -0.07 -0.39 -1.2 0.33 1.51 -0.27 -0.53 0.34 -0.45 0.09 0.56 0.0 0.06 0.18 2.54 -1.24 0.5 0.33 -0.26 -0.19 -0.27 -1.93 -1.97 -0.45 -0.0 -1.93
-8.93 -5.21 -7.75 -10.8 - - -1.41 -3.82 -6.14 -0.89 -2.6 0.7 -3.66 1.79 1.08 -3.3 -0.38 -1.47 -2.69 -1.0 -2.07 1.47 -4.25 4.14 -1.27 -0.21 -0.5 - - - - - -
-1.15 -0.69 -2.86 - - - - - - -2.62 -1.49 1.71 - - - 0.23 -6.8 - - -2.84 - 4.0 -2.13 -0.49 -2.71 -0.42 -1.07 -1.21 -0.23 -0.9 0.71 2.0 -0.2
- - - - -3.08 - - - - - - - -0.51 2.74 - - 1.74 - - - - 1.7 -0.89 4.18 - -5.13 -2.61 - - - - - -
-8.63 -10.36 -9.96 -6.9 -9.83 - -0.82 - -7.52 -7.66 0.58 1.0 0.52 0.68 1.62 1.1 0.72 0.25 0.51 0.67 0.58 1.6 0.78 -0.55 0.6 -2.15 -2.02 0.03 -0.26 -0.21 0.18 0.43 -0.55
- - - - -5.11 - -2.92 -4.75 - - - 0.18 1.06 1.91 - - 2.43 - - - - 4.15 -0.44 -0.98 0.22 - -1.51 - - - - - -
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.