Heatmap: Cluster_20 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Ovule	Ovule, mature	Ovule, pollinated	Strobilus, female	Ovulate strobilus	Microstrobilus	Kernel	Leaf	Leaf, female	Leaf, male	Leaf, salicylic acid	Leaf, seedling	Leaf, truncation control	Leaf, truncation treatment	Leaf, water	Yellow-green stripe leaves	Green leaves	Stem	Cambium	Root
Gb_00161	-	-	-	-	-	-	2.24	-	-	-	-	-	-	-	-	-	-	-	-	3.93
Gb_00688	-	-	-	-	-	-	-	2.41	-	-	-	-	-	-	-	-	-	-	3.88	-
Gb_00885	-1.55	1.57	-	-	0.49	-	1.86	0.14	1.37	1.22	-0.63	-2.54	0.4	-	0.78	-	-	-0.64	0.16	-
Gb_01343	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_01418	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Gb_01612	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_01690	-0.83	-	-2.11	-	1.6	-	-	1.62	0.36	-0.45	-1.64	-1.78	0.72	1.27	-0.17	0.3	-	1.03	0.66	-0.6
Gb_02699	3.09	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.52	-
Gb_02797	-0.71	-	-	-	-1.14	-	-1.87	-1.19	-	-0.88	-	1.09	2.17	1.05	-2.12	-1.95	-2.02	-	-	3.05
Gb_03628	-	-	-	-	-	-	-	2.45	-	-	-	-	-	-	-	-	-	-	3.86	-
Gb_03705	-1.45	-	-	-	-	-	1.46	0.41	-1.0	0.36	-0.48	0.43	-0.61	0.15	0.93	-0.15	-	1.1	-	2.32
Gb_04192	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_04508	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Gb_04996	-	-	3.67	-	-	-	-	-	-	2.86	-	-	-	-	-	-	-	-	-	-
Gb_05428	-	-	-	-	-	-	-	2.14	-	0.23	2.0	-	1.33	-0.42	0.82	-	-	-	2.43	-
Gb_05429	-	-	-	-	-	-0.48	-	1.16	-	-0.32	2.42	0.66	-1.85	-1.57	1.73	-	-	-	2.39	-2.77
Gb_06142	2.96	-	-	-	-	-	-	1.95	-	-	-	-	-	1.55	-	-	-	-	2.44	-
Gb_06412	-4.25	-	-	-2.74	-2.81	-3.47	2.26	-1.33	-1.83	-1.98	-0.78	-2.56	-3.89	-2.83	-0.69	0.02	-0.42	-4.04	-0.34	3.27
Gb_06454	-1.26	-	-	1.43	1.47	-	-0.9	-0.64	-0.12	-0.05	-	-	-1.85	-	-1.44	2.13	-	-	-0.31	2.39
Gb_06801	-	-	4.02	-	-	-	-	1.92	-	-	-	-	-	-	-	-	-	-	-	-
Gb_07445	1.47	-	-	3.17	-	-	1.76	-1.36	-	-	-	-	-	-	1.38	-	-	-	0.9	-
Gb_07815	1.57	-	-	-	-	-	-0.65	0.89	-0.41	-	0.16	-	-0.13	-	-	1.91	2.29	0.04	1.06	-
Gb_08017	1.25	-0.42	-1.37	-	1.41	-0.37	1.01	-0.4	0.63	-0.34	-0.53	-0.82	-1.8	-	-3.17	0.18	0.8	0.73	-	0.81
Gb_08839	-0.02	0.78	-0.65	1.64	-2.22	-	-0.85	-0.16	0.76	-0.19	0.35	-0.68	-3.72	-1.79	0.24	-0.09	0.11	0.68	0.17	0.15
Gb_08942	-0.56	0.05	0.28	-0.08	0.01	0.26	0.44	0.05	-0.23	0.33	-0.09	-0.51	0.07	0.15	-0.11	-0.05	-0.51	0.01	-0.98	0.6
Gb_09021	1.83	-	-	2.94	-	-	1.38	0.67	-	-	-	-	-	-	-	-	-	1.05	1.33	-
Gb_10085	-	-	-	-	-	-	-	1.56	-	2.69	3.4	-	-	-	-	-	-	-	-	-
Gb_11537	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.32
Gb_12037	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.32
Gb_12185	-0.48	-	-	-	-	-	2.11	-2.44	-2.05	-	-0.53	-1.39	-0.78	-1.97	-	-	-	-	-1.99	3.63
Gb_12254	0.45	2.62	1.46	3.16	-	-	-	-0.35	-	-	-	-	-	-	-	-	-	-	-	-
Gb_12465	0.27	1.12	-0.32	0.38	0.41	-1.02	-1.55	0.51	0.36	0.82	0.24	-2.15	-1.94	-2.96	-0.49	-0.73	-0.2	-0.49	1.36	-0.68
Gb_13030	-	-	-	2.84	1.23	-	1.28	0.76	-	-	-	-0.84	1.38	0.65	-	-	-	-	0.69	-
Gb_13252	-0.5	-	1.11	1.18	-0.53	1.71	0.37	0.21	-2.22	-	0.4	-0.45	-0.89	-1.01	-0.72	1.17	-	0.43	-0.04	-
Gb_13630	-	-	-	-	-	-	-	0.45	-	-	-	-	-	-	-	-	-	-	-	4.22
Gb_13727	0.45	-	-	-	0.51	-	-	1.15	1.04	-	-	-1.63	1.07	0.54	-	1.05	-	-	2.54	0.26
Gb_13848	-1.51	1.65	-	-	-	-	-	0.08	0.59	0.29	1.77	-1.4	1.18	1.2	0.29	0.18	0.6	-	-0.95	-
Gb_15466	-	-	-	-	-	-	-	1.17	1.05	-	2.55	-	-	-	-	3.29	-	-	-	-
Gb_15850	-	-	-	-	-	-	-	2.14	-	-	-	-	-	-	-	-	-	-	1.99	3.54
Gb_15909	-	-	-	-	-	-	-	-0.24	-	-	2.8	-	-	-	3.45	-	-	-	0.36	-
Gb_16035	-	2.36	2.08	-	-	-	-19.12	-1.24	-	0.6	-	-0.71	-	-	-	-	3.02	-	-	-
Gb_16160	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_16256	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_16556	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_17609	1.33	-	2.32	-	-	-	2.47	1.09	-	-	2.28	-	-	-	-	-	-	-	-	-
Gb_18204	2.68	-	-	-	-	-	-	0.07	1.66	3.23	-	-	-	-	-	-	-	-	-	-
Gb_18323	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_18413	2.65	-	-	-	-	-	-	2.36	-	-	-	-	-	-	-	-	-	-	3.11	-
Gb_18701	0.24	-	-	1.87	0.33	-	-1.45	0.42	-	-0.64	-0.93	-2.61	0.52	0.51	0.64	1.45	1.25	-0.88	-0.37	-
Gb_18702	-	-	-	-	-	-	-	0.74	-0.31	-	2.2	-	0.96	-0.16	1.05	1.93	-	-	2.07	-
Gb_19021	0.07	1.23	-	2.77	-	-	-	0.79	-	-0.75	-	-0.91	-1.28	-	-0.13	0.76	0.56	-	1.3	-
Gb_19070	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_19287	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_19482	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_19658	0.26	-	-	-	-	-	-0.82	1.41	1.62	1.55	-1.19	0.6	-0.43	1.25	-	-	1.51	-1.26	-	0.3
Gb_19918	-	-	-	-	1.31	2.62	0.02	-4.22	-	-	-	-	-	-	-	-	-	-	-	3.37
Gb_21216	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_21222	1.13	-0.08	0.34	2.04	-	-	-1.94	0.04	-1.94	-0.49	-0.29	-3.2	0.45	-1.67	-0.45	0.91	0.07	-	0.82	0.25
Gb_21336	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_22353	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_25593	-	-	-	2.37	-	-	-	1.31	1.28	-	-	-	0.9	0.16	0.58	1.36	0.78	-	0.22	-
Gb_26206	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_26330	0.98	-0.24	-	-	-1.4	-	-2.25	0.28	-1.79	-0.62	0.15	-	0.79	-0.6	1.11	1.35	0.1	0.88	1.56	-1.49
Gb_26853	0.83	-	-	2.92	-	-	0.95	-0.21	-	1.02	0.12	-	-	-	-	-	-	1.11	0.69	-0.07
Gb_27098	3.74	-	-	-	-	-	-	2.73	-	-	-	-	-	-	-	-	-	-	-	-
Gb_29308	0.55	-	-	-	-	-	-	-1.11	0.09	-1.49	-	-	-	-	-	-	-	-	-	4.06
Gb_30515	-	-	-	-	-	-	-	1.12	2.48	-	-	-	-	-	-	-	-	-	3.61	-
Gb_30538	1.65	-	-	-	-	-	-	1.82	1.24	0.78	-	1.29	1.26	1.11	-	-	-	-	1.17	-
Gb_30768	-1.04	-1.72	-2.87	-	0.35	-1.01	-0.26	-0.33	-1.21	0.73	-2.92	-2.01	-2.21	-2.38	-	-2.2	-	-1.02	-	3.59
Gb_31339	0.59	-	1.01	0.68	1.08	-0.83	-0.75	0.31	0.93	-1.88	-	-3.0	1.12	-0.15	-	-0.74	1.29	-	0.61	-1.28
Gb_31553	-	-	3.96	-	-	-	-	2.17	-	-	-	-	-	-	-	-	-	-	-	-
Gb_31785	-2.19	0.98	-	-	0.56	0.6	-0.39	-0.13	-0.26	-0.44	-	-	-2.57	-	-1.37	-0.9	-	0.22	0.45	2.99
Gb_31828	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_32039	0.76	-	0.05	-	-	-	0.73	-0.37	0.6	-	0.57	-0.17	-	-	0.68	-	0.72	1.85	-	2.03
Gb_32270	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_32892	-	-	-	-	-	-	-	0.94	-	-	-	-	-	-	-	3.7	-	-	2.35	-
Gb_33052	-	1.37	0.2	-	-	-	-	1.33	-0.34	0.39	0.16	-1.58	-1.13	0.33	-	1.71	1.52	-	0.34	0.11
Gb_33728	3.03	-	-	-	-	-	3.43	0.09	-	-	-	-	-	-	-	-	-	-	-	-
Gb_34453	-1.88	0.18	-	0.72	-	-	0.67	0.2	1.01	0.21	-0.02	-0.89	-0.01	-1.43	1.46	-	-	0.85	0.34	1.22
Gb_34567	-	-	-	-	1.64	-	-	0.48	-	-	1.36	-	0.33	-	2.32	-	-	2.32	0.74	-
Gb_35678	-	-	-	-	-	-	0.94	-2.1	-	1.16	-	-0.65	-1.28	-	-	0.82	-	-	0.28	3.53
Gb_35819	-0.64	-0.11	-0.28	2.02	-	-	-0.38	0.03	-0.92	-0.5	0.66	-1.6	-0.91	-1.67	1.54	1.13	0.56	-	-0.21	-1.53
Gb_35974	0.41	-	0.66	2.79	-0.35	-	-	-0.04	-0.74	-1.36	-0.25	-2.48	0.13	0.49	-	0.41	-0.39	-	-1.01	0.41
Gb_36062	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.93	-	-	4.02
Gb_36073	-	-	-	-	-	-	2.59	-	-	-	-	-	-	-	-	-	-	-	3.8	-
Gb_36180	0.22	-	-	-0.29	-0.27	-	-0.52	-0.09	0.83	0.68	-0.08	-2.86	0.2	0.55	1.01	1.1	-0.03	-	0.04	1.21
Gb_36542	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.32	-
Gb_36578	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_36708	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_36744	0.85	-	-1.74	0.32	0.16	-1.75	-0.01	0.82	0.58	-0.05	0.78	-3.33	-	-	2.38	-1.04	-1.03	-0.21	-0.21	-1.76
Gb_36861	-	-	-	-	-	-	-	-1.14	-	-	-	-	-	-	-	3.7	-	-	-	2.71
Gb_36950	-21.74	-	-	-	2.66	-	-3.31	1.04	1.48	-0.04	-	-2.73	-	1.01	-	-	2.47	-	-5.18	-8.75
Gb_37128	-	2.8	-	-	-	-	-	0.55	0.09	-	-	-	-	-	-	-	2.95	1.47	-	-
Gb_38238	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_38944	1.31	-	0.07	1.6	-0.41	0.35	0.69	0.07	-1.66	0.63	-1.59	-	-0.25	0.54	0.59	-	-0.46	-	-0.91	0.57
Gb_39193	0.22	-	-	-	-	0.41	-0.4	0.32	-0.51	-	0.17	-	-0.12	-	1.08	2.37	0.33	-	0.25	1.6
Gb_39320	-	-	-	-	-	-	-	-	-	-	-	2.03	-	-	-	-	-	-	3.99	-
Gb_39371	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-
Gb_40463	-0.63	0.36	-0.98	0.17	0.41	0.44	-0.04	-0.05	0.9	0.33	0.41	0.07	-1.39	-1.13	0.03	-0.42	-0.02	-0.25	0.37	-0.76
Gb_40516	1.13	-	-0.84	0.79	-1.92	-1.58	-1.0	-0.82	-1.31	-1.73	1.85	-2.89	-0.69	0.53	0.73	0.87	-	1.02	-0.91	0.38
Gb_41035	1.81	1.8	-	-	-	-	-7.81	0.59	0.65	-	-	-0.15	-	1.4	-	-	-	0.85	-	2.2
Gb_41106	0.14	-	-	-	-	1.26	-0.14	-0.83	-2.22	-1.27	2.58	-	-	-	2.27	1.17	-	0.42	-	-
Gb_41129	-	-	3.5	-	-	-	-	2.35	-	-	-	-	-	-	-	-	-	-	1.86	-
Gb_41345	-0.23	-	-0.67	0.89	0.88	-	0.83	-0.46	1.69	0.97	0.08	-0.68	-0.55	-	1.04	-0.53	-	-0.98	-0.72	-0.11
Gb_41349	0.97	-0.21	1.3	-0.09	0.87	-	-2.66	-1.19	-0.23	1.12	2.28	-2.78	-6.09	-	0.26	-	-0.18	-	-0.75	-0.66
Gb_41372	-	-	-	-	-	-	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.