Heatmap: Cluster_50 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
-0.21 -2.01 - 0.69 -1.69 -0.58 - -1.38 0.45 0.64 -0.02 0.5 - - - - - -2.18 - -0.97 -2.03 2.85 0.8 1.41 1.91 -2.17
- - - - - - - - - - - - - - - - - - - - - - - - - -
- 2.44 - 2.38 - - - - - - - - - - 1.21 - - - - - - - - - 3.71 -
- - - - - - - - - - - - - - - - - - - - - - 3.45 - 3.91 -
- - 2.18 0.56 - -1.61 - - - - - -0.42 - - - - - - - - -0.92 -0.91 - - 3.31 2.99
- - - - - - - - - - - - - - - - - - - - - 3.9 - - 3.47 -
1.94 - - - - - - - - - - 2.33 - 1.66 - - - - 2.23 - - - - - 2.57 1.74
- 1.83 - - - - - 1.72 - - - - 2.09 - - - - - - - 2.89 2.44 - - 1.02 -
- - - - - - - - - - - - - - - - - - - - - 4.7 - - - -
- - - 1.95 0.19 - - - 1.21 - -1.62 - - -2.17 - - - -2.18 - - - -1.84 1.58 0.6 3.25 1.86
-0.9 - -0.89 - - - - -1.0 - - 0.66 - - - - - - - -0.96 -1.21 - 0.3 2.7 2.03 2.91 1.37
-1.44 - -1.2 -0.35 0.99 0.21 1.4 0.04 0.59 1.3 0.89 0.66 - - - -1.54 - - - -0.63 - 1.83 -1.81 - 2.43 -
- - - - - - - - - - 2.98 - - - - - - - - - - 3.72 - - 2.3 -
- - - - - - - - - - - - - - - - - - 2.11 - - 3.8 - - - 2.96
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - 3.17 - - - - - - - - - - 4.09 -
0.02 -2.87 -0.94 1.05 -1.23 0.6 -2.8 -0.31 -2.01 -3.09 -1.04 -0.91 -0.44 0.35 -0.28 - -1.22 -2.59 -0.11 - - -2.4 -1.88 0.46 3.1 1.68
- - - - - - - - - - - - - - - 3.64 - - - - - 3.76 - - - -
-0.0 2.21 0.72 -1.2 -1.09 -1.03 0.31 -1.26 - -0.38 - -1.19 - - -1.53 - - 0.01 - - 1.32 2.24 - - 1.85 1.19
0.46 0.69 - -1.99 - - -1.62 -1.85 - - - - - 1.53 - 1.4 0.72 - -0.09 - 1.55 3.07 - -1.17 -1.74 0.96
- - 0.33 - 0.23 - - - 0.37 1.81 0.26 0.44 0.76 - - - - - - - -0.11 0.93 2.22 0.93 1.24 1.47
- - - - - - - - - - - - - - - - - - - - - - - - 4.7 -
-1.81 -3.36 - 1.03 -1.75 - -2.74 -1.73 -0.06 0.67 0.02 0.61 -0.92 -1.44 - - - -1.37 - -1.73 -1.8 1.75 2.57 0.99 1.98 -0.64
- - - - - - - 1.49 1.46 - - - - - 1.38 - 1.7 1.8 - - - 3.22 - - 0.86 -
- - - - - - - - - - - - - - - - - - - - - - 3.84 - 3.54 -
- 1.94 2.04 - - - - - 1.79 - - - - 1.22 - - - - - - - 1.55 - - 2.13 2.3
0.53 0.25 -0.1 -0.32 -0.56 -0.3 -0.08 0.21 -0.2 -0.21 -0.02 0.33 0.77 -0.62 -0.31 -0.13 -0.28 -0.82 -0.88 -0.54 -2.16 1.01 -0.05 -0.67 1.38 -0.1
- - - - - - - - - - - - - - - - - - - - - 1.62 2.36 - 4.15 -
- - - - - 3.22 - - - - - - - - - - - - - - - 4.06 - - - -
-2.74 -0.44 0.32 -1.21 -1.35 -2.63 1.26 0.68 -0.28 0.05 -0.59 -1.79 0.53 0.47 -0.52 0.05 -2.91 -0.02 -0.64 -3.25 -2.23 -0.22 0.19 - 2.07 1.69
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - 1.83 - - - - - - 1.8 - - - - - - 1.73 1.8 1.55 - 3.21 - - - -
- - - - - - - - - - - - - - - - - - - - - 4.7 - - - -
- - 1.92 -0.16 -0.41 - 0.34 - - - - - - - - 1.35 - 1.14 - - - 3.8 - - -0.79 -
- - - - - - - - - - -0.04 - - - - - 0.2 1.45 - - 1.14 4.09 0.92 - - -
- - - - - - - - - - - - - - - - - - - - 1.52 4.53 - - - -
- - 1.12 0.08 -1.3 -0.99 -0.99 - - -1.05 -0.01 - -0.6 1.52 0.33 0.96 1.22 - - -1.38 0.35 2.31 -1.38 - 1.94 -
- - - - - - - - - - - - - - - - - - - - - - 2.9 - 3.92 1.77
- - - - - - - - - - - - - - - - - - - - - - - - 4.7 -
- -2.21 -0.02 0.49 0.34 -0.21 0.83 0.79 -1.33 -1.39 -0.76 -0.25 - -0.36 - -0.07 - -0.16 0.86 -0.5 1.0 -1.6 -1.13 - 2.51 0.94
-0.14 -0.56 -1.48 0.88 0.76 1.04 0.26 2.2 -1.46 -1.56 -1.53 -0.79 -2.04 -0.56 -2.73 -0.43 - -0.52 - -0.51 -0.38 -0.51 -2.85 - 2.41 -0.16
- - - - - - - - - - 3.49 - - - - - - - - - - - - - 3.88 -
- - - - - - - - - - - - - - - - - - - - - 4.7 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - 4.7 -
- - - - - - - - - - - - - - - - - - - - - - - - - -
3.68 - - - - - - - - - - - - - - - - - - - - 3.73 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - 4.7 -
1.19 - -0.09 - -0.19 - - - -0.05 - - - 0.34 1.84 - - - 1.92 - - -0.53 1.51 - - 2.23 2.02
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - 4.7 - - - -
1.54 1.54 1.63 - 1.11 - - - - - 1.33 - - - - - - - - - - 3.15 0.74 - - 0.9
- - - - - - - - - - - - - - - - 2.9 - - - - 4.21 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - 4.7 -
- 1.06 - -0.93 -0.99 - -0.44 -1.0 - - -0.96 - -0.45 - -0.98 - -0.92 - 1.34 - 0.71 -1.28 2.7 1.1 2.53 -1.47
0.22 0.55 -0.94 -0.72 -0.8 -2.32 -1.06 -1.98 -1.56 -1.63 -2.03 -1.15 0.23 -1.53 -2.12 -1.52 -0.97 -0.55 0.01 -0.78 0.32 -3.96 1.6 1.33 2.54 0.86
- -0.68 - - - - - - - - - -0.17 - - - - 0.71 0.7 0.66 -0.59 -0.2 0.34 1.53 - 2.65 2.95
-0.29 - -1.28 -0.26 - - - -1.07 - -1.4 - - - 0.69 0.16 1.09 0.45 - -0.35 -0.6 1.81 1.36 -0.66 0.91 1.88 1.66
- 1.24 - - - 1.0 - 2.0 - -0.13 - - - - - 0.92 -0.04 - -0.37 - 0.55 2.5 - - 1.63 1.52
- - 2.34 - - - 1.55 - - - - - - - - 1.49 1.31 - - - - - - - 3.67 -
- 0.66 1.29 1.05 - -0.28 -0.52 -0.51 - -0.58 - - 1.33 1.08 - - - - -0.54 - 0.47 - 0.5 - 1.8 2.44
- 1.77 - 2.27 - - - - - - - - 2.63 - - - - - - - - - - - 3.53 -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - 4.7 -
- - - - - - - - - - - - - - - - - - - - - - - - 4.7 -
- - - - - - - - - - - - - - - - - - - - - 4.7 - - - -
- - - 2.78 - - - - - 0.62 - - - - - - 0.97 - - - - - - - 3.97 -
-0.68 - - - - - - -0.64 0.38 - - 0.44 - - - - - -1.26 - - - 3.17 1.28 - 2.85 1.62
- - - - - - - - - - - - 1.75 0.76 - - - 0.76 1.0 - - - 1.97 - 3.28 1.85
- - - - - - - - - - - - - - - - - - - - - 4.7 - - - -
3.2 - - - - - - - - - - - - - - - - - - - - - 3.8 - 1.51 -
- - - - - - - - - - - - - - - - 0.73 0.17 - - 1.32 0.37 - 1.37 3.44 2.58
0.44 -1.76 -1.99 -1.39 -1.17 0.01 -1.16 0.19 -1.28 -1.18 -3.39 -2.64 -0.85 0.41 -1.82 -1.26 -2.74 -1.06 -0.33 -2.49 -0.09 2.14 -1.4 0.2 2.87 0.22
- - - - - - - 3.34 - - - - - 2.69 - - - 1.74 - - - - - - 2.6 -
- - - - - - - - - - - - - - - - - - - - - 2.83 1.57 2.83 3.14 -
- - - - - - - - - - - - - - - - - - - - - 4.7 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.