Heatmap: Cluster_31 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots (apex), 7 DAG
Roots (differentation zone), 4 DAP
Roots (elongation zone), 4 DAP
Roots (meristematic zone), 4 DAP
Roots (stele cells), 7 DAS
Roots (tip)
Leaves (rosette), 21 DAG
Leaves (rosette), 29 DAG
Leaves (rosette), 35 DAG
Leaves (rosette), 42 DAG
Leaves (rosette), 57 DAG
Epidermis cells
Mature guard cells
Stems (internode)
Stems (internode), senescent
Meristem (M1-3), 7-9 DAG
Meristem (M4-6), 1-12 DAG
Meristem (M7-1), 13-16 DAG
Axis of the inflorescence
Pedicel
Flowers (receptacles)
Flowers (floral buds)
Flowers (sepals)
Flowers (petals)
Flowers (stamen filaments)
Flowers (anthers)
Flowers (carpels)
Flowers (ovules)
Stigmatic tissues
Pollen
Siliques
Siliques, senescent
Pods of Siliques
Pods of Siliques, senescent
Embryo
Endosperm
Seeds, dry
Seeds, from senescent siliques
Seeds, young
Seeds, germinating
Seedlings, 5 DAG
Seedlings, 11 DAG
Seedlings, 14 DAG
Seedlings, etiolated
0.83 - -4.51 - - -5.26 0.63 -0.29 0.29 -0.72 -0.99 -1.15 -1.23 -0.48 -3.4 -2.14 -2.0 -6.67 - -0.67 -1.61 1.25 2.14 -1.04 -1.33 -0.37 -0.53 -0.73 0.35 -1.1 -0.05 -0.24 -0.12 -0.31 - - 3.09 0.02 -0.05 -2.49 -0.55 1.82 1.88 -0.43
-2.92 -2.12 - - - - -5.03 - - - - - - 3.02 2.1 -2.03 -0.84 -3.27 3.55 1.9 2.76 0.04 -3.2 - - - -2.29 -4.58 - - 1.23 -2.73 1.3 -1.37 - -5.59 - -1.48 -2.38 -6.24 - -2.0 -0.93 -
-4.6 -5.22 -5.76 - - - -6.54 -4.87 -2.44 -1.99 -2.65 - - -3.86 -1.55 -2.61 -5.04 -6.77 -2.65 -1.04 0.48 2.47 -3.16 -6.8 -1.28 4.13 -3.04 -4.87 - 1.47 -0.97 -2.57 -0.47 0.75 - -2.96 -5.82 -6.72 -2.75 0.31 -1.78 -2.16 3.11 -1.55
- - - - - - - - - - - - - - - 4.8 2.64 0.1 - - - - - - - 1.44 -4.05 - - - 0.48 - -2.56 - - 0.77 - - -2.81 - -1.51 - 0.84 -0.84
1.65 1.66 3.06 -5.08 - -0.85 - -7.34 -7.3 -4.55 -0.04 - - -4.07 -5.82 -6.87 -6.72 -4.77 -2.46 -4.1 -1.73 -2.04 -3.34 -4.78 -2.43 1.32 -2.11 -3.34 2.45 -3.5 -5.77 -5.74 -4.9 -2.29 -0.33 -2.16 - -5.32 -2.27 -2.23 1.49 -2.67 3.74 -3.39
2.08 2.36 0.38 -3.05 - -2.42 -0.89 0.22 0.79 1.16 1.63 -1.57 -4.03 -0.62 1.4 -2.98 -2.37 -4.75 -3.45 -3.55 -0.7 0.13 -0.22 -4.39 -3.25 -1.66 -0.93 -0.19 1.68 -4.94 -0.92 -2.32 -1.64 -0.03 -3.66 -0.56 -4.29 -3.64 0.06 0.09 -0.04 1.27 1.17 0.77
- -2.13 -1.56 - - -3.77 -3.52 - -4.66 -4.69 -4.66 - - - - - - - - - -1.42 0.34 - - - 3.91 0.33 0.9 -2.07 -1.89 1.92 -2.23 0.44 -3.16 0.32 3.55 -1.89 -0.45 1.44 -0.81 -4.03 - -3.26 -4.65
AT1G35720 (OXY5)
1.67 1.54 1.74 -1.91 1.6 0.77 -1.4 -2.4 -2.51 -2.51 -2.62 -5.74 -7.54 2.25 1.92 0.39 -0.3 -1.62 1.16 0.67 -0.89 -1.67 -2.77 -2.76 0.58 -3.59 -1.91 -2.67 1.83 -5.77 -0.04 -2.74 -0.07 -1.79 -8.45 -3.67 -6.01 -2.97 -2.93 -1.0 -1.66 -1.86 0.75 0.51
AT1G36180 (ACC2)
-0.39 -0.5 -0.03 1.41 - 0.01 -0.22 -1.37 -1.21 -1.68 -1.55 -2.99 - -0.04 0.09 0.04 0.18 0.91 0.29 0.32 0.25 0.58 0.12 -0.6 -0.76 -0.82 0.74 0.76 0.18 -3.49 -0.06 -1.19 0.22 -1.66 0.95 0.85 -1.95 -1.35 0.35 1.97 -0.05 0.51 0.4 -0.89
- - - - - - - - 1.7 - - - - - - - - - - - - - - - - - - - - - - - 2.3 - - - - 5.16 - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.46 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -0.29 - - - - 5.43 - - - - - - - -
1.26 0.85 0.96 0.7 - -0.49 -2.55 -0.88 0.03 -0.19 0.07 -2.38 0.02 0.33 0.11 0.38 0.61 0.77 1.17 0.27 -1.09 -0.51 -0.29 -1.06 -0.7 -1.17 0.86 0.92 0.91 - 0.26 -1.42 -0.07 -1.48 0.22 -0.05 -2.43 -1.41 0.64 0.58 -2.64 -0.33 0.42 -1.74
-0.15 - 0.68 1.8 - 0.21 -3.3 -4.63 -2.28 -1.03 -1.37 1.69 - -0.49 -1.91 0.19 1.46 2.03 1.21 0.81 0.57 0.91 -1.38 -2.3 - -1.03 1.56 1.08 -1.56 - -0.39 - -2.89 0.93 0.86 -0.93 - - -0.13 0.43 -0.75 -0.51 -0.91 -1.54
- - - - - - - - -4.61 -6.02 - - - 2.72 2.8 -4.13 - -5.57 -3.27 -2.46 -1.16 -0.07 -3.65 - -3.61 2.65 -2.18 -1.46 -2.74 3.64 0.87 -4.35 0.68 0.45 - 1.16 - - 0.94 - - - - -
- - - - - - - - - - - - - - 4.58 - - - - - - - -1.7 - - 2.96 - - - - 0.6 -0.63 1.6 - - 2.77 - - - - - - - -
1.45 - 1.61 2.27 - 2.91 -2.13 -3.69 -1.54 -2.63 -2.34 - - -1.62 0.14 -0.56 0.38 -0.0 1.21 0.22 -0.91 -0.59 -1.04 -1.82 -0.67 0.36 -0.09 -0.63 -2.89 0.66 -1.44 - -4.71 -2.77 0.12 -1.17 - - 0.67 0.75 -1.83 0.69 1.12 -1.5
-1.28 -0.34 -1.06 -1.09 - -2.61 -3.39 -1.23 -1.95 -1.61 -0.46 - -4.62 -2.48 -3.07 -2.63 -4.42 -3.21 -2.28 -2.27 -0.3 -1.81 -0.69 0.81 -0.4 -0.69 0.65 1.15 0.28 -4.07 -0.51 2.21 -1.16 -1.94 -2.21 -1.08 3.35 2.5 1.47 0.3 -1.42 -3.43 -0.4 0.07
0.53 0.78 0.74 -0.0 1.35 -0.16 -0.43 -0.57 0.11 0.15 0.11 -0.7 -0.08 0.11 0.08 -0.85 -0.49 -0.11 -0.0 -0.26 0.13 -0.28 -0.18 0.21 0.03 -0.46 0.21 0.35 0.26 -4.01 -0.23 -0.98 -0.22 0.3 0.23 1.11 -1.05 -1.44 0.06 -0.12 -1.14 -0.58 0.23 0.04
-0.01 -0.5 0.14 -1.16 -0.11 -0.84 0.01 -0.5 -0.63 -0.8 -0.7 -2.45 -3.98 0.09 -0.68 0.59 0.77 0.77 0.21 0.01 0.91 0.64 -0.28 -0.18 0.15 -1.32 0.95 1.26 -0.2 -9.55 0.29 -1.33 -0.3 -0.58 0.7 0.28 -1.34 -1.63 1.46 -0.31 0.02 0.25 0.16 0.39
AT2G01905 (CYCJ18)
0.26 -3.46 -0.01 1.05 - -2.58 -1.51 -3.49 - -6.09 -6.14 - - 1.03 - 1.07 1.56 2.49 1.78 0.9 0.47 -3.31 -1.61 -2.08 -0.59 -0.18 1.84 2.02 -1.98 -2.65 0.04 - -0.7 - 0.78 -0.9 - - 1.59 -2.06 -2.01 -0.18 -0.2 -2.36
AT2G11810 (MGD3)
0.33 -2.24 -1.28 -3.03 - 0.42 -1.71 -0.63 -0.92 -2.39 0.27 - - -0.87 1.63 -3.53 - -3.13 -0.38 -1.63 1.0 -1.57 -1.89 1.11 -3.03 1.01 -2.57 -2.76 -2.82 -4.85 1.63 -1.77 -1.37 1.33 -4.76 1.5 -4.39 - 2.03 -0.89 0.11 -0.35 3.0 0.81
- - - - - - - - - - - - - - - - - - - - - - - - - 5.34 - - - - 1.77 - - - - - - - - - - - - -
AT2G24010 (scpl23)
-0.3 - - - - - 2.04 -0.52 -0.03 -3.0 -1.31 1.03 - -2.95 2.26 -3.04 -3.06 -5.25 -1.38 - -2.54 -0.94 -0.78 -3.16 - -3.66 -0.13 1.2 - - -0.13 - -0.43 -0.74 1.0 0.82 0.02 - -1.29 -0.66 0.44 2.55 3.18 -2.37
AT2G34790 (MEE23)
0.45 1.12 -0.76 -2.25 - -1.07 -1.93 -1.3 -2.62 -2.77 -2.85 -6.61 -5.3 -1.16 1.25 -1.49 -3.73 -5.21 -2.48 -2.37 0.46 0.69 -0.17 -0.3 0.5 1.07 -2.32 -2.08 -0.04 -3.49 0.53 -0.01 1.09 3.4 -5.25 2.36 -2.48 -2.69 -1.72 -1.17 -1.6 -1.74 -0.12 0.79
AT2G38940 (ATPT2)
2.05 2.72 2.15 -0.29 - 0.1 -3.88 -4.22 -3.15 -2.89 -2.33 -2.72 -1.99 -5.81 -3.96 0.32 -0.79 -3.65 - -7.97 -2.52 -1.47 -2.74 -1.23 2.94 2.4 -3.49 -2.33 -0.19 0.24 -6.32 -3.83 -4.95 -2.83 -5.24 -5.9 -5.46 -3.21 -3.59 -1.22 1.46 -1.96 1.22 0.36
- - - - - - - - - - - - - - - - - - - - - - - - - 4.11 - - - - 0.53 - - - - - - - - - 4.66 - - -
-5.44 - - - - - -2.18 -4.89 -3.44 -4.01 -3.31 - -0.1 -3.91 -3.81 -8.36 -3.41 -3.35 -5.5 - -3.07 -0.22 -0.72 -5.56 -3.51 3.48 -1.13 0.09 -5.55 2.02 0.6 -2.32 -0.64 -5.4 0.25 3.49 -0.18 -1.76 -0.79 -0.13 -0.7 -2.18 2.38 -2.14
AT2G45450 (ZPR1)
-1.8 -2.75 -0.45 -1.05 -4.02 -0.31 -3.17 -0.3 -0.35 -0.21 0.02 -2.96 -0.57 0.57 1.9 2.3 1.28 0.09 1.58 0.7 -0.91 -2.27 -2.19 3.07 1.26 -4.35 -2.38 -3.25 -0.82 - -1.81 -3.6 -2.34 -1.13 -1.03 -4.14 -6.26 -6.04 -4.02 -0.56 -1.37 -2.54 1.02 0.28
AT2G46880 (PAP14)
- - - - - - - - - - - - - - -5.43 - -7.61 -5.49 - - - - -6.53 - - 5.1 -4.38 - - - -7.76 - - - - - -5.99 - -6.26 -6.07 -2.46 - 3.22 -
- 4.41 2.08 - - 1.45 - - - - - - - - - - - - - - 1.2 - - - - - - - - - - - - - - - - - - 1.93 - - 3.28 -
0.34 -0.95 -0.24 0.42 - 0.43 -0.74 -0.75 -0.05 -0.14 -0.11 -2.71 -0.8 -0.57 -0.19 0.27 0.52 0.76 0.16 -0.24 0.3 0.82 -0.34 -0.02 0.07 -0.3 0.83 0.97 0.27 -5.57 0.03 -1.04 -0.22 -0.09 0.18 1.37 -1.76 -1.22 0.88 0.22 -1.17 0.46 0.15 -0.23
-0.06 2.7 3.6 -2.8 - -1.48 -4.13 -5.49 - -8.89 - -4.24 - 1.35 -4.55 0.96 1.2 0.61 -2.04 -2.48 0.57 -2.34 -6.43 -4.12 -4.31 -5.42 -1.2 0.22 2.12 - -1.48 -6.01 -2.25 - -0.88 1.31 - - -1.33 -0.65 -1.59 -3.3 -0.44 0.52
- - - - - - - - - - - - - - - - - - - - - - - - - -0.43 - - - - 2.93 - 1.67 - - 5.02 - - - - - - - -
- - - - 0.1 - - - - - - -1.19 - -1.81 3.2 - - - - - -0.16 - - - - -3.22 -2.55 -1.83 - - 3.23 -1.03 3.44 2.24 - 1.89 - -4.07 1.2 - - - - -
- - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - 2.97 - - -0.0 - - - 2.09 -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
1.71 1.7 1.23 1.65 - 0.61 -3.21 -3.46 -2.98 -2.79 -3.1 - - -2.38 - -2.85 -1.42 -2.73 -0.75 -1.0 -0.65 -0.88 -4.12 -4.41 -3.7 -0.74 -2.08 -2.75 0.08 -2.26 -1.97 -2.3 -2.55 -3.86 2.92 2.22 0.26 -1.87 -2.41 0.08 -0.15 -4.34 2.89 -1.7
1.93 3.63 3.66 -1.84 1.62 0.86 - -8.4 -7.15 -3.98 -1.2 - - -2.99 -3.46 - -10.24 -7.59 - - -8.01 -2.61 - - - -4.51 -3.3 -1.08 -7.07 - -7.2 - -7.24 - - - - -5.88 -2.45 0.21 -0.43 -3.82 0.67 2.22
AT3G46120 (PAP19)
- - - - - - - - - - - - - - - - -3.59 - - - - - - - - 5.26 -3.5 - - - - - - - - -2.6 - - - - - - 2.41 -
1.87 - -0.01 -0.09 - 0.25 - - - -4.06 -3.91 - - - -0.74 - -2.65 -2.62 - -1.66 - - -1.71 - - -1.99 -5.8 - - - 0.16 -2.54 -0.84 - - -1.31 -2.79 -0.77 -1.82 4.75 0.85 - - 1.71
AT3G54260 (TBL36)
0.27 -1.39 -0.35 1.2 -3.62 -0.48 -1.98 -3.94 -6.18 -7.92 -7.18 -6.25 - 3.81 -1.85 0.86 -0.61 -1.81 -0.18 0.38 3.18 -1.26 -4.68 -6.43 -6.1 -3.53 0.77 -0.38 -0.98 - -0.73 - -1.76 -6.6 -0.92 -2.83 -8.22 -9.0 -1.63 -2.47 -1.64 -1.77 1.5 -0.43
AT3G54700 (PHT1;7)
- - - - - - - - - - - - - - - - -8.3 - - -4.66 -4.99 4.1 - - - 4.09 -5.0 -5.22 - 0.51 -3.05 -1.28 -4.92 - -5.05 2.62 -0.56 -2.24 -1.52 -4.91 -6.24 - -2.66 -3.83
- - - - - - 0.01 0.91 2.08 3.02 2.13 - - - 1.01 - - -4.62 - - -2.0 -0.58 0.57 -2.38 - -0.07 -2.93 -1.62 - - -1.53 -0.81 -1.0 3.74 - 1.2 - - -2.49 -5.8 -2.4 -0.2 - -
AT4G03270 (CYCD6;1)
-0.46 -1.43 -1.05 1.03 1.85 -0.66 -0.42 -3.09 -3.26 -3.08 -3.83 -0.48 -4.85 0.29 -1.63 2.2 1.18 1.09 1.07 0.51 -0.5 -1.89 0.05 -1.31 -2.4 -1.56 1.28 0.07 -3.24 -1.59 0.39 -4.62 -0.56 -3.53 1.56 0.13 -2.49 -5.9 -1.65 -0.43 -1.02 1.06 1.45 -0.71
- - - - - 4.35 - - - - - - - - - - - - - - - - - - - - - - - - 4.56 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
3.62 3.62 2.46 -0.12 - 0.47 -3.13 -2.75 -2.17 -1.7 -0.55 -6.14 - -3.66 -0.01 -8.59 -5.2 -4.62 -4.19 -4.64 -4.0 - -5.76 -5.49 -6.71 0.21 -5.18 -6.36 - -6.29 -5.2 -6.46 - -4.85 - -4.79 - -4.78 -2.64 -0.12 -0.55 -1.92 1.3 1.55
AT4G13700 (PAP23)
- - - - - - - - - - - - - - -2.86 - - - - -2.4 - -1.92 - - - 4.37 -2.28 -1.95 1.43 0.14 -2.89 - - - - 4.01 -3.42 - -0.05 - - - 0.25 -
-0.47 -3.26 -0.58 0.44 - 0.62 1.12 -0.94 -1.59 -2.97 -1.05 -3.04 -5.04 -1.13 0.57 0.01 1.2 1.23 0.72 -0.28 -0.69 -1.29 -0.87 -4.32 -3.47 -1.03 1.12 -0.0 -1.34 - -0.47 0.24 -0.49 -1.12 -0.16 -0.65 1.44 0.7 0.28 -0.56 0.93 -0.23 1.41 1.9
2.55 4.39 1.3 -3.07 - -1.7 - - -5.3 - -4.58 - 1.69 - -3.32 -4.53 -2.64 -3.35 - - -1.81 - -4.65 - - -5.72 -4.4 -5.24 -5.29 - -5.77 - -7.27 - - -3.23 - - - 2.41 0.83 -4.24 -0.96 1.21
AT4G33030 (SQD1)
-1.5 -1.76 -1.84 -1.35 -1.16 -1.87 0.97 -0.53 -0.33 -0.52 0.03 -1.23 -1.67 -0.44 -0.24 -0.88 -0.74 -0.38 0.45 0.66 0.06 -0.44 0.54 -0.27 -0.42 -1.33 0.42 0.1 0.21 -6.13 0.18 -1.88 0.3 -0.67 1.08 0.92 -2.23 -1.7 -0.03 0.37 0.97 1.11 2.28 0.83
0.78 0.82 -2.39 -0.8 - -2.34 -1.14 -0.69 0.04 -0.02 0.0 -0.45 - -0.16 0.25 1.23 -0.16 -0.26 -0.32 0.51 -0.17 0.24 -1.29 -1.06 -0.98 -0.82 0.12 0.2 3.15 -4.33 -1.14 -1.24 -0.83 0.33 -0.85 -2.61 -0.43 -1.72 -1.15 -0.24 0.11 -0.21 1.3 0.02
-2.85 - - - - - - - - - - - - - - 0.69 1.12 0.32 - - -3.65 -1.93 - - - - 1.78 4.49 - - -4.21 - - - -0.34 -2.03 - - 3.51 - -4.98 - - -
-0.58 0.34 0.13 -0.15 0.96 -0.8 -0.64 0.49 0.86 0.92 1.05 -2.37 -1.81 -0.12 0.81 -1.06 -0.69 -0.09 0.05 -0.18 0.55 0.32 0.25 0.18 -0.6 -1.45 0.49 0.34 -0.09 -4.16 0.14 -0.66 0.3 0.89 -0.66 -0.78 -0.31 -0.6 0.13 -0.64 -0.9 -0.2 0.41 -0.12
AT5G25150 (TAF5)
0.2 -0.23 0.09 0.58 -0.69 -0.08 -0.82 -0.08 0.32 0.27 0.31 -3.64 -4.71 -0.14 0.25 0.26 0.44 0.88 0.42 0.1 0.14 0.05 0.01 -0.02 -0.65 -0.65 0.96 1.05 -0.02 -5.29 -0.11 -1.08 -0.15 0.54 0.44 0.2 -1.04 -1.13 0.78 0.17 -0.66 -0.59 0.2 -0.49
-0.5 0.68 0.16 0.17 -0.21 -0.68 -0.82 1.09 0.85 0.91 0.93 -2.05 -2.75 0.09 0.74 -1.01 -0.74 -0.09 -0.04 -0.14 0.34 -0.29 0.02 0.32 -0.15 0.1 0.62 0.11 -0.11 0.25 -0.37 -0.47 0.0 0.81 -0.21 -0.88 -0.44 -0.82 -0.05 -0.89 -0.02 -1.17 -0.45 -0.08
- - - - - - - 0.77 0.72 - 0.56 - - - - - - - - - - - - - - - - - - - - - - - - 5.29 - - - - - - - -
-0.87 - - 2.19 - 1.97 - - - - - - - - - -2.59 -0.78 -0.95 1.03 -0.95 1.26 0.06 - -0.16 - -1.2 2.49 2.49 3.04 - -1.73 - - - - -1.43 - - 2.58 - -1.99 - - -
0.07 -1.47 -0.5 0.12 -0.16 -0.21 -0.42 -0.34 -0.37 -1.57 -1.4 -3.78 -8.92 0.27 -0.01 0.32 0.56 0.73 0.45 -0.07 0.48 0.87 0.07 0.31 -0.17 -0.72 0.97 0.88 1.63 -7.62 0.07 -2.78 0.05 -0.77 1.2 0.06 -5.03 -3.38 0.88 -0.56 -0.82 0.76 0.38 -0.37
AT5G43350 (ATPT1)
4.08 3.71 1.42 -4.98 - -0.3 - - - - - - -4.38 - -8.46 -4.63 -9.09 -10.86 - - - - - - - - - - - - - - -10.6 - - -9.62 - - - 0.21 1.07 -4.98 0.29 2.55
AT5G43360 (PHT3)
5.46 - - - - - - - - - - - - - - - - - - - - - - - - - -8.08 - - - - - - - - -7.82 - - - - -7.6 - - -
AT5G43370 (PHT2)
5.4 -2.61 -4.62 - - - - - -4.54 -2.69 -2.82 - - - - - - - - - - - - - - - - - - - - - - -2.88 - - - - - -4.14 - - 0.02 -4.02

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.